Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00426 ATGCCGCATCTTCTGCAGCAAATTCATCCCCAACCCCATATTTCGCCATTGAAACTCTCATCTTCCTTACCATCTTCACCATTTCACTCTCAATTTCAAGCTTCCCGCCCATGGTTTTACTCCCCAAGTTCTTTATCCCTTCTTCGTCCACGTCCGGTGATGAGAGGCGCAACCATACGGTGTATGGCCAATTCACGGAGGGTTAAAATGGTGGCCAAGCAGATTCAGAGGGAGCTTTCCGATATGCTTCTTACCGATAAGGTGTTGCAGTACGCCATTCTTCCTGAGGCTTCTTTGGGAGCTGATAAGTATCTCTCGTCTCTCACCACCATCACCGATGTTGAAGTTTCTGCCGACTTGCAGGTGGTTAAAGTATATGTATCGGTCTTTGGCGATGAAAGAGGAAAAGATGTTGCTATTGCCGGGTTGAAGTCTAAAGCTAAGTATGTTCGAAGTGTATTGGGAAAACGTATGAAGCTTCGGCTAACTCCTGAGATTCGCTTTATAGAAGATGAATCTTTTGAGAGAGGAAGCAGGGTAATTGCCATATTGGATCGGATCAAGGACAAAAAGAAGGATACCGATGATGAAGACTTCGAGCCATCTGAACTATCTGATACTCTTGAAGACAACAGGGACTGGAAAGGTGATGATGCTGATGAAGACATAATATATGTACAATAG 684 44.59 MPHLLQQIHPQPHISPLKLSSSLPSSPFHSQFQASRPWFYSPSSLSLLRPRPVMRGATIRCMANSRRVKMVAKQIQRELSDMLLTDKVLQYAILPEASLGADKYLSSLTTITDVEVSADLQVVKVYVSVFGDERGKDVAIAGLKSKAKYVRSVLGKRMKLRLTPEIRFIEDESFERGSRVIAILDRIKDKKKDTDDEDFEPSELSDTLEDNRDWKGDDADEDIIYVQ 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6466865 6472469 - Lsi10G004260.1 Lsi10g00426 671983

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00426 227 ProSitePatterns Ribosome-binding factor A signature. 150 171 IPR020053 GO:0006364
Lsi10g00426 227 MobiDBLite consensus disorder prediction 205 227 - -
Lsi10g00426 227 Pfam Ribosome-binding factor A 67 183 IPR000238 GO:0006364
Lsi10g00426 227 PANTHER RIBOSOME-BINDING FACTOR A, CHLOROPLASTIC-RELATED 55 227 IPR000238 GO:0006364
Lsi10g00426 227 TIGRFAM rbfA: ribosome-binding factor A 62 188 IPR000238 GO:0006364
Lsi10g00426 227 MobiDBLite consensus disorder prediction 190 227 - -
Lsi10g00426 227 Gene3D - 62 178 IPR015946 -
Lsi10g00426 227 Hamap Ribosome-binding factor A [rbfA]. 66 184 IPR000238 GO:0006364
Lsi10g00426 227 SUPERFAMILY Ribosome-binding factor A, RbfA 62 187 IPR023799 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00426 K02834 rbfA; ribosome-binding factor A - csv:101215399 344.354
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g60 . . . . . . . . . . Cma02g00357 . Car02g00224 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00426 . Chy11g00326 . . . . . . . . . Sed01g0251 Cmo02g00359 . . . . . . Cpe05g01299 Bhi10g01928 Tan05g1227 Cmetu11g1309 . Hepe08g0963 . . . . . . . . . . Csa02g01320 . Cme11g00451
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010825 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00426 Lsi_Chr10 FPKM 9.327095 10.135967 5.072445 4.274766 6.45942 5.926742 5.393175 2.666644 2.523476 2.532607