Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00435 ATGGGGTTTCGTCTTCCATCATCTTTGATTCCTCAGGCGAAGCAATTGCTGAGGAGGAGCTCGGGAAATCCATCGGCGGTTCCGAAAGGTCATGTGGCAGTGTACGTCGGAGAGTTTCAGAGGAAGCGATTTGTGATTCCGATTTCGTATTTGAATCATCTTTCGTTTCAACAGCTTCTCAGTCGAGCAGAGGAAGAGTTTGGATTTGATCATCCAGAAGGCGGTTTGACGATTCCTTGTGGAGAAGATGCGTTTATCGATCTCACTTCTAGATTGCAAGCTTGTTAA 288 46.18 MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFQRKRFVIPISYLNHLSFQQLLSRAEEEFGFDHPEGGLTIPCGEDAFIDLTSRLQAC 95
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6560802 6561089 + Lsi10G004350.1 Lsi10g00435 671992

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00435 95 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR21-LIKE 1 94 - -
Lsi10g00435 95 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 1 94 IPR003676 GO:0009733
Lsi10g00435 95 Pfam Auxin responsive protein 19 91 IPR003676 GO:0009733
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00435 K14488 SAUR; SAUR family protein - csv:101203171 191.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00435 Lsi-Chr10:6560802 Lsi10g00442 Lsi-Chr10:6587354 8.80E-47 dispersed
Lsi11g01156 Lsi-Chr11:20134322 Lsi10g00435 Lsi-Chr10:6560802 7.93E-35 dispersed
Lsi10g00435 Lsi-Chr10:6560802 Lsi10g00436 Lsi-Chr10:6566149 1.41E-44 tandem
Lsi10g00435 Lsi-Chr10:6560802 Lsi11g01165 Lsi-Chr11:20167073 7.54E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g69 . . . . . . . . . . . Cma20g00793 . . Sed05g2272 . Cpe15g00572 Bhi05g01767 Tan02g0735 Cmetu01g0608 . . . . . . . . . . . . . . . Lsi10g00435 . . Cme01g01310 . . . . . . Bma03g00581 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme11g00440
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000045 7 14 1 1 5 16 0 0 13 4 12 13 24 19 19 31 17 1 0 16 18 3 0 3 14 20 13 24 12 19 339
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00435 Lsi_Chr10 FPKM 6.269029 7.718995 5.320911 6.127797 11.086935 12.492542 11.634463 5.484307 6.300798 7.313295
Lsi10g00435 Lsi_Chr00 FPKM 4.17876 5.123401 5.355826 5.206605 7.246945 7.603629 7.273269 5.682855 5.904382 5.769683