Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00451 ATGGGGATTCGGTTTCTATCTTTGGTTCCTCATGCCAAGCAAATTCTGAAGATGCAGTCAGGTTTCACCAAAAACCAGTTGGATGTTCCAAAAGGCCATGTGGCAGTTTATGTAGGAGAAATCCAAATGAAGCGGTTCGTGGTTCCAATATCTTACCTAAACCATCCGTCGTTTCAACAACTGCTCAGCCACGCAGAGGAAGAGTTTGGCTTCCATCATCCTAAAGGAGGCCTAACAATTCCTTGCAAAGAAGATGCCTTCATTGATCTCACTTCTAGATTGCAAGTAGCTTGA 294 43.88 MGIRFLSLVPHAKQILKMQSGFTKNQLDVPKGHVAVYVGEIQMKRFVVPISYLNHPSFQQLLSHAEEEFGFHHPKGGLTIPCKEDAFIDLTSRLQVA 97
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6623257 6623550 + Lsi10G004510.1 Lsi10g00451 672008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00451 97 Pfam Auxin responsive protein 13 93 IPR003676 GO:0009733
Lsi10g00451 97 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 1 95 IPR003676 GO:0009733
Lsi10g00451 97 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR21-LIKE 1 95 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00451 K14488 SAUR; SAUR family protein - csv:116402091 185.652
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi10g00451 Lsi11g01163 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00442 Lsi-Chr10:6587354 Lsi10g00451 Lsi-Chr10:6623257 9.21E-67 dispersed
Lsi10g00449 Lsi-Chr10:6616046 Lsi10g00451 Lsi-Chr10:6623257 2.57E-49 proximal
Lsi10g00450 Lsi-Chr10:6619825 Lsi10g00451 Lsi-Chr10:6623257 9.75E-48 tandem
Lsi10g00451 Lsi-Chr10:6623257 Lsi11g01169 Lsi-Chr11:20195046 9.56E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g75 . . . . . . . . Cmo19g00724 . . Cma20g00780 . . . . . Bhi05g01762 Tan02g0722 Cmetu01g0683 . . . . Cla02g00466 Cam02g0473 Cec02g0472 . Clacu02g0476 Cmu02g0471 Cre02g0803 . . . . Lsi10g00451 Csa07g00060 Chy11g00312 Cme01g01303 . . . Bda14g00596 . . . . Sed05g3572 . . . . . . . . Bhi10g01910 Tan05g1209 Cmetu02g0248 . . . . . . . . . . . Lsi11g01163 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000045 7 14 1 1 5 16 0 0 13 4 12 13 24 19 19 31 17 1 0 16 18 3 0 3 14 20 13 24 12 19 339
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00451 Lsi_Chr10 FPKM 0.572143 0.626252 0.0 0.0 0.0 0.0 0.0 0.097116 0.141158 0.124758