Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00458 ATGGAGGTCGTCTTCTCTTCCAAGCCTCAATCACTTACCTTCAATCCATGTCTTCCTCTCAATTCTTCTTCCTCCTTCTCCTACTCTCGCCTTCGCTTCGTCCGCCGCCAATTCCTTGGCTGTGGCCACAATCTCCGTCCTCCTGATGGCTTGCACTCTCGACGAAGGTGCAGGAAGGTTGGCCTACTTGTTCAGTCTCCGAGGTGCATTTTCCGAGCTACGTTCAGTTCGAATCCGGTTCTCATCGTTGTTGCTGTCGTTACTTTCTCCGCTGTCTCCTTCATCTACATGAACTTCAATAGGAGGAAGAAGAATGCGGTTGAGCGTTCCCAATCTCCAAAGCTTGCCTTATCTCAACTAGGTAGAGGCATCAACTGGTCTGTCGATGGTCAGATAATGGGCTTTAGGGATCACCATGGCGACTTTTTAGAGCAGAACATTGCCATAAAGGATAGACCTGAAGAGAAAAGTTATTCTGGGGAAGAAGAGACTGTTCTGCAGCTTCAAAAATCTGGTCTCTCACATGAGGCCAGCGCCACCGAAACATTGCAGCCATCTGTTTCTGAAGTTACTACTTCTAAGGATAATGATTCTCTGTTTTCAGATGAAAGTGAAGCAACAGATCCTTCTCTTCTTTCTGATATATTTGAATCTGGCGTCTTGCAGCCTCTTATTTTTGCCAATGACATGACTGAATTACAACTGAATGGATCTCATGTCAAATCCCACTCTGAATTGCCTGTTGTGGTTGATACAAAAGAGATTCCACCTGTTGCTGGTCCTTTATATAGTGTGTATGATCAAGTGACTCAACATTTCAAAGCAGATGGTGAGCTTCTAAAAGAGGAGAAATTAACTAGTTCCAACTCTCAAATTGAAGAACCGCCTAGAGAAGATATTTACATGTTCTATGAAGATAAAAAGTCAAGTAATCAAACGGCAACTTCTTCTCGTACTTCTCATCTATACAACCAAAAATTTTCTTCAGTGATGATTAACGGTATCTCCAGAGTAGCAGAATTAGTGTTAGAGGATTCTCTTCCAGTTGCAGGGTATGATGAAAGAAAAGTACCTGATGCAGGATATAAGGAAGGTTCTTCAGGAATCAGAAAAAAATCTGGAGGAGGCAACAATATTTCAAGACACGGGGAAAGAAAAGAACCCAGTCTGCATAAAGGAAAAGTTGTGAATGGGTTACCCTATCCAAATGGGAAGCATGTTCATTACAAAAATCTTCATATAGATCAATATAAATCATATAATCAATGCCTGAAAGGTGGAAGTCAATATTTCTTCTCCGCTGTACCAATTTGTGTGGTTGATGATTTACAAATTACGTTAAATTTGCATGACTGTATCAAAATACTTCAAGATATGGAAAGCGAGGGCTTATTGGATATGAATAAGATTTATCATGGGAAGTTTTTCAATATTTGCAAGAGTAAAAAGGCTGTTCAGGAAGCTTTTCAGTACACCGCACTTATTCCAAACCCCACATTGAGTACATTTAATATGCTCATGTCTGTATGTGCAAGTTCTCAAGATTCTGACAGAGCTTTTCAAGTTGTGCGGCTTGTCCAGGAGGCTGGAATGAAAGCAGATTGCAAACTATACACTACTTTAATCTCAACATGTGGCAAAAGTGGAAAAGTGGATGCAATGTTTGAAGTATTCCACCGAATGGTTAATGCTGGAGTGGAACCTAATGTTCACACGTATGGGGCACTTATTGATGGTTGTGCTAGAGCAGGTCAAGTGGCAAAGGCATTTGGCGTCTATGGAATAATGAGGTCAAAGAACGTGAAGCCAGACAGAGTTGTATTCAATGCACTTATCACTGCATGTGGTCAGTCAGGAGCGGTGGATCGTGCTTTTGATGTGCTGGCAGAAATGGGGGCTGAGTTACATCCTATAGAGCCTGATCATATTACAATTGGGGCTTTGATGAAGGCATGTGCAAATGCTGGTCAGGTTGATCGAGCAAGAGAAGTGTACAAGATGATCCATGATTATAAGATTAAGGGCACACCAGACGTTTACACCATTGCTGTTAATTGTTGCAGTCAATCTAGTGATTGGGACTTTGCTTCCAATGTATATCAAGACATGACCAGGAATGGAGTACAACCTGATGAGATTTTTCTCAGTGCGTTAATAGACGTTGCAGGCCATGCTGGTAAGCTGGATGCTGCCTTTGAAATCTTAGGAGAAGCCAAGACACTAGGGATACGTGTTGGCATTGTGTCATATAGTTCGTTGATGGGTGCCTGTAGCAATGCTAAAAACTGGCAGAAGGCGTTGGCACTGTATGAGGATCTCAAGTCCATGAAGTTGAGGCTAACTGTATCAACTGTGAATGCACTAATAACTGCACTGTGTGATGGGGAACAACTACAAATGGCTATGGATATTCTAACTGAAATGAAGGGATTAGGACTCTCCCCGAACAATATTACATACTACATACTTACGGCAGCGAGTGAAAGGAATGATGATTTACAAATTGCCCTCATGCTCCTCTCTCAAGCCAAAGAGGATGGGATTGTGCCAACCTTAACTATGTATAGGTGCATAATTGGCATGTGCTTACGAAGAATTTCAGAGCCCTCTGCCCTTGATAGACCACTCTTGTCACTGGACTCTAAACTGCCTCAAGTCGATAGTAAGACAGCACAGGCCTTAATGGTGTACCGGGAAATAATTGAAGCCGGAATTGTTCCGAGCATTGAAGTTTTATCTCAAGTTTTGGGGTGCTTGCAGATTCCTCATGATCCCGCCTTTAAAAGTAGACTCATAGAAAACATAGGAGTAAGTGCTGACTCATCAAGATCGTCAAATCTCTGCTCCTTGATAGATGGCTTTGGTGAATATGACCCTCGCGCATTTTCGCTGTTGGAGGAAGCTGCTTCACTTGGAGTTGCTCCATTTGTATCCCTCAAAGGAAATCCGATTGTTGTAGATGTCAAGGAGTTGCACATTCATGCAGCTGAGGTTTACCTCTTGACAATTTTGAAAGGGCTCAAACATCGGCTTGCCGCTGGTTCAAGGTTACCAAACATAATGATTTTACTGCCGAATGAGACGACGCAAATTCTCTCTCCAAAGGGGGAGAGGACCATTAACCTTGCAGGAAGAATAAATGGTTTGGCCTTGAGAAGATGGTTACAACCGAAACTTTCCGATTCTCTAAGTGGAAAACCAGGAGAGTTCAGCTCGTTTCAGTCACGTCTAAGAAAAGGAATAAGCCATCAGCAGCGTAATATTCGCATTGGGAACCTATCATTGGATTAA 3291 42.42 MEVVFSSKPQSLTFNPCLPLNSSSSFSYSRLRFVRRQFLGCGHNLRPPDGLHSRRRCRKVGLLVQSPRCIFRATFSSNPVLIVVAVVTFSAVSFIYMNFNRRKKNAVERSQSPKLALSQLGRGINWSVDGQIMGFRDHHGDFLEQNIAIKDRPEEKSYSGEEETVLQLQKSGLSHEASATETLQPSVSEVTTSKDNDSLFSDESEATDPSLLSDIFESGVLQPLIFANDMTELQLNGSHVKSHSELPVVVDTKEIPPVAGPLYSVYDQVTQHFKADGELLKEEKLTSSNSQIEEPPREDIYMFYEDKKSSNQTATSSRTSHLYNQKFSSVMINGISRVAELVLEDSLPVAGYDERKVPDAGYKEGSSGIRKKSGGGNNISRHGERKEPSLHKGKVVNGLPYPNGKHVHYKNLHIDQYKSYNQCLKGGSQYFFSAVPICVVDDLQITLNLHDCIKILQDMESEGLLDMNKIYHGKFFNICKSKKAVQEAFQYTALIPNPTLSTFNMLMSVCASSQDSDRAFQVVRLVQEAGMKADCKLYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAELHPIEPDHITIGALMKACANAGQVDRAREVYKMIHDYKIKGTPDVYTIAVNCCSQSSDWDFASNVYQDMTRNGVQPDEIFLSALIDVAGHAGKLDAAFEILGEAKTLGIRVGIVSYSSLMGACSNAKNWQKALALYEDLKSMKLRLTVSTVNALITALCDGEQLQMAMDILTEMKGLGLSPNNITYYILTAASERNDDLQIALMLLSQAKEDGIVPTLTMYRCIIGMCLRRISEPSALDRPLLSLDSKLPQVDSKTAQALMVYREIIEAGIVPSIEVLSQVLGCLQIPHDPAFKSRLIENIGVSADSSRSSNLCSLIDGFGEYDPRAFSLLEEAASLGVAPFVSLKGNPIVVDVKELHIHAAEVYLLTILKGLKHRLAAGSRLPNIMILLPNETTQILSPKGERTINLAGRINGLALRRWLQPKLSDSLSGKPGEFSSFQSRLRKGISHQQRNIRIGNLSLD 1096
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6648175 6660000 - Lsi10G004580.1 Lsi10g00458 672015

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00458 1096 Pfam Pentacotripeptide-repeat region of PRORP 649 790 IPR033443 -
Lsi10g00458 1096 Pfam Pentacotripeptide-repeat region of PRORP 502 636 IPR033443 -
Lsi10g00458 1096 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 746 780 IPR002885 -
Lsi10g00458 1096 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 781 815 IPR002885 -
Lsi10g00458 1096 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 533 IPR002885 -
Lsi10g00458 1096 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 604 634 IPR002885 -
Lsi10g00458 1096 MobiDBLite consensus disorder prediction 358 397 - -
Lsi10g00458 1096 Gene3D Tetratricopeptide repeat domain 743 895 IPR011990 GO:0005515
Lsi10g00458 1096 Gene3D Tetratricopeptide repeat domain 579 742 IPR011990 GO:0005515
Lsi10g00458 1096 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 534 568 IPR002885 -
Lsi10g00458 1096 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Lsi10g00458 1096 Gene3D Tetratricopeptide repeat domain 448 578 IPR011990 GO:0005515
Lsi10g00458 1096 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 641 675 IPR002885 -
Lsi10g00458 1096 Pfam Pentatricopeptide repeat domain 819 862 IPR002885 -
Lsi10g00458 1096 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 73 1096 - -
Lsi10g00458 1096 MobiDBLite consensus disorder prediction 177 195 - -
Lsi10g00458 1096 MobiDBLite consensus disorder prediction 377 392 - -
Lsi10g00458 1096 MobiDBLite consensus disorder prediction 177 205 - -
Lsi10g00458 1096 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 676 710 IPR002885 -
Lsi10g00458 1096 TIGRFAM PPR: pentatricopeptide repeat domain 644 674 IPR002885 -
Lsi10g00458 1096 TIGRFAM PPR: pentatricopeptide repeat domain 537 570 IPR002885 -
Lsi10g00458 1096 TIGRFAM PPR: pentatricopeptide repeat domain 748 780 IPR002885 -
Lsi10g00458 1096 TIGRFAM PPR: pentatricopeptide repeat domain 784 816 IPR002885 -
Lsi10g00458 1096 TIGRFAM PPR: pentatricopeptide repeat domain 571 604 IPR002885 -
Lsi10g00458 1096 TIGRFAM PPR: pentatricopeptide repeat domain 502 535 IPR002885 -
Lsi10g00458 1096 TIGRFAM PPR: pentatricopeptide repeat domain 679 712 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00458 - - - csv:101204147 1903.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00458 Lsi-Chr10:6648175 Lsi11g01022 Lsi-Chr11:17384488 3.70E-09 dispersed
Lsi10g00458 Lsi-Chr10:6648175 Lsi04g01344 Lsi-Chr4:21209552 3.41E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g85 . . . Bda08g00972 . . Bma05g00408 . . . Cma02g00333 Cma20g00774 Car02g00214 Car20g00677 . . . . . . . . . . . . . . . . . . . . . Lsi10g00458 . Chy11g00302 . . . . . . . . . Sed01g0228 Cmo02g00330 Cmo20g00774 . . . . Cpe16g00291 Cpe05g01307 Bhi10g01901 Tan05g1200 Cmetu11g2217 . Hepe08g0952 . . . . . . . . . . Csa02g01347 . Cme11g00424
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008629 1 2 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00458 Lsi_Chr10 FPKM 0.0 0.0 0.303135 0.0 0.0 0.0 0.0 0.0 0.0 0.0