Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00459 ATGGCTTCCACTGCAGCTCAGGAGGATCTTGCTTTATCAATGGAAGAAGAAAGAGGCTTTGATGAACAGAATTTTACTCAAGAAAGAGGCTTTGATGAACAGAATTTTACTCAAACAGATTCTTCCTCTTTTCTCTCAAGATTTCTTCTTTACATTGGTGCTCATGAACTTTTCTCACAAGAGATGTGGAAAGCAGCGCTGACAGAATTAGTAGCAACAGCGTTTCTGATATTTTGCTTAACAAGTTCCATAATCTCGTGCTTGAACTCACACGAATCAGATCCAAAGCTCCTAATTCCGATCGCCGTTTTCATCATCCTCTTCCTCTTCCTCCTCGTCACTTTCCCTCTCTCCGGCGGCTTCCTGAGCCCCATCTTCGCTTTCATCGCCGCCCTCCGCGGCGTCATAACCTTCACACGCGCCGCCATCTACATTCTTGGCCAATGTCTCGGCTCCATTATCGCCTTTCTCATGATCAAGGATGCAATGAGCCCCGATGTTGCTGACAAATATTCTCTCGGCGGCTGCACCATCCGCGGCACCGGCGACACTCCCGGAATCGGCCTCACCACCGCTCTCGTCCTCGAATTCGCCTGCACCTTCGTCGTTCTCTATATCGGAGTCACGGTGGTGCTCGATGAGAAGATGAGCGAGCGGCTTGGTTTGCCAATGGTGTGTGGGATGATTGCGGGGAGTTCTGCGGTGGCGGTTTTCGTGTCGACGACTATCACAGGGCGGGCCGGATACGGCGGGGTGGGGCTGAATCCGGCGAGGTGTTTAGGGCCGGCGTTGTTGAGAGGGGGGCGGTTGTGGGAAGGGCATTGGGTGTTCTGGGTGGGGCCGTTTGTGGCGTGTATGGTTTATTATGGATTTTCAGTGAATTTGCCAAAGGGGCAATTGGTTGTAGAGAAGGGGGAGATAGGGATTTTGAAGATGGCCGGAGGTTGTTGGCGGCAACGGCGCCGAAAGTTGGAGGGAAAATTATGTCAAAATGTTGATATCTGA 1005 51.34 MASTAAQEDLALSMEEERGFDEQNFTQERGFDEQNFTQTDSSSFLSRFLLYIGAHELFSQEMWKAALTELVATAFLIFCLTSSIISCLNSHESDPKLLIPIAVFIILFLFLLVTFPLSGGFLSPIFAFIAALRGVITFTRAAIYILGQCLGSIIAFLMIKDAMSPDVADKYSLGGCTIRGTGDTPGIGLTTALVLEFACTFVVLYIGVTVVLDEKMSERLGLPMVCGMIAGSSAVAVFVSTTITGRAGYGGVGLNPARCLGPALLRGGRLWEGHWVFWVGPFVACMVYYGFSVNLPKGQLVVEKGEIGILKMAGGCWRQRRRKLEGKLCQNVDI 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6669279 6671609 - Lsi10G004590.1 Lsi10g00459 672016

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00459 334 Gene3D Glycerol uptake facilitator protein. 50 297 IPR023271 -
Lsi10g00459 334 PRINTS Major intrinsic protein family signature 275 295 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi10g00459 334 PRINTS Major intrinsic protein family signature 140 159 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi10g00459 334 PRINTS Major intrinsic protein family signature 103 127 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi10g00459 334 PRINTS Major intrinsic protein family signature 64 83 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi10g00459 334 PRINTS Major intrinsic protein family signature 195 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi10g00459 334 PRINTS Major intrinsic protein family signature 236 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi10g00459 334 SUPERFAMILY Aquaporin-like 60 287 IPR023271 -
Lsi10g00459 334 PANTHER AQUAPORIN-LIKE 36 322 - -
Lsi10g00459 334 Pfam Major intrinsic protein 59 286 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi10g00459 334 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 36 322 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00459 K09866 AQP4; aquaporin-4 - csv:101208503 461.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00459 Lsi-Chr10:6669279 Lsi10g01268 Lsi-Chr10:16972498 1.46E-20 dispersed
Lsi10g00459 Lsi-Chr10:6669279 Lsi04g00959 Lsi-Chr4:10044700 8.71E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g88 . Blo15g00657 . . . . . . . . . Cma20g00773 . Car20g00676 . . . . . . . . . . . . . . . . . . Cone8ag1256 . Cone10ag1186 Lsi10g00459 . Chy11g00301 . . . . . . . . . Sed01g0227 . . . . . . . . Bhi10g01899 Tan05g1199 Cmetu11g1981 . Hepe08g0951 . . Cla02g01120 Cam02g1193 Cec02g1182 . Clacu02g1182 Cmu02g1142 . . Csa02g01348 . Cme11g00423
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010832 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00459 Lsi_Chr10 FPKM 33.010994 38.584957 42.679409 45.194958 31.353987 29.175741 31.609222 83.118347 82.204132 81.948692