Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00461 ATGAAGAGTAAAAAGAGGAAGCTAAAGAGTCCTATAAAAACCGTGAGGCCTTCCAAGTCTGCTCGAGTTTTTATCTCACCGGAAGTGGAAGTTGTAGATGAAACAGAACGAGTTGAGAAGTTGGAGCAAAGAGAAGTGTCTCAAGAGTTCGAAGAAGGTTGTCCGTGGAGGAACTTAGAATTGATTTTGTTTGTTCAGAACAAAGAGCTCGACCAACAAAAGAAGGTCGAAGCAGTTTTCAGCTTTGTAAACTCAAAATTGAAAGAGAAAGATAAATATTATGATACAGTAAAAATATCGCGCTTGATAGTTTTTCTTAGTGATTGGGTGCAGTCATTGTTGATTTCATCTGAAAAGAAAGCAAAGAATGATGGTGAAAAACATATTAACGTAGTTGTTGAGCCATGCTTAGATTATAGATGCTGGGACATTTTTAAATTTTGTTTGGAAGAATCAGTGAAAACACACATCACTTTGAACCTCTCAAAAAATCTTTTGCATGCCTTTTGTTTTGTTACAAGGCATGCGATGTCCCTACTAGCTGCTTCATTGAGTTCAAAAGAAGAGTTATTTGGTGGGGATTGTTTCAAGTTGTACAATATTGTGCTTGATTGTGTTTCTTTAGTATTTTCACCCCACATGGGTCTATCCAATGAAAATTTAGATGCTTGGATTTCTACAATTGATGCAGCACTCGAGTTTCTTCACATAATTTATGTAAATAGCTTGGAAGGTGGAGATGTAGGCATTTTTGCTATTAAATTTTCTTGTACGATGCTTGAGCCTTTTGCTAAATTTTTGTGGATTCACCCTACCAAGAAAACTGGATTTCACAATTTTGTCAATAAGCTTTTGGAACCATTACTGCAATTATTGCGTGACATAAGCCTTAAAGCTGATGGATGTAATCATTGGACAAGAACATTGATGAAGTTACTTGACGAAGTTCTATCTCATGCTTTGTTTCATACTATGCATATCGATGGATTTTTGTGCTTACATGGTTCAGAGAAGGTTATGAAATCCCATGATGAGAAATCAGAAGAGTCTAAAGCACATATTAAGAGCTACCATAGACATTTATTTGATGAAGTGCAAAAACTAGTTGCAGGAAAGAAATTTTTGTCGTTGGGTGCAGTAGGAGAATTGTTTCACGTGCTTGTTGTCAGGGTTAAAAAGGTGAAAGGGGCTTCAATGTTATTTGAGGACACCAAACTGAATAGCAAAATGGGTATTTTGGGACCTTTGAGGGATGATATATCAAGTCATGCATCTTCTGCGCTTCAAGGAAGTGCCAATGTACTATCAGAGAAAAGCAATAACGAGAGCAATTTGAGTACAGAAACAAGGAGGTCTCTTTTTGAGTTTTTTGTACAGATTTTGGATCCTTTACTTCAGACCATTGAACTCATTAGTGCTGAGATTAAACTGGGATCAACCTTGTCAGATGTTCATTACTTACTCAAATCAATAAATAATGTACTTGCAAGTTTTATGAAGGAAAAGGTGTACTTGAGAACTGAGGATAACTCTGAAGGGGCTTGCCATAATTTCTTAAAAAAGGTGTATAATACAATAATGTTGGTTTCCTCTCATTTACTATTATTATCAAGACTTGAGATAGAAAACAATATAGACCTGGAAGTATTTGTTTTAGCAGCAAATGAGATACTGGTGACTCTTGGTTATCTTCTGGAAATCGAATATGATGTGATTGGGGATGATTTGGTGAGCTTATGGATGCTGATCCTTTCTTACTCTGCTTTTAATCTTTCTTTCACAACCGTATCTAAACAACACTCATTAACTTCCAAGATTCAAGAGCTTGGATGTCAACTGATTGTGTTATACGGTCAGCTGCGGCAGGTCAACATCAGTATTTTTGCTCTATGTAAAGCTACGAGAGCAGTGATATCAAATGAAACTGAAACTGAAAAAGGATATGCTAGCTTTATGACTTCTTTAGGTCCTGAAGCTTATGGGAAATCAGTTGGGATGTTGCTTTCTTCCCAAGAAATAAAATTTGCTATTCATAAAGCTATTAAATATATACCTGAAGGGCAAGCTAGCGGAATTATTCAGCAGTTAACTGAGGATGTGACAGAGACTTTAGCATGGTTGAAACTGTGCAATATGAACTTGATTATAAGAAACAAGATGGGGGGCTCAGATATGCAGCCTGTCCTTCTTGGGAGAGGGTTGTCTGAAGTATATGCTCTGATGTTGGATTCACTGATGATCACATCTGGCAATGCTTTCCAAGTTGGAACTTCAATTGCGAACTTGGTTTCAGTCATACGTCCTTCCATGAGTAGTTTAGTTGGACTACAGTCAGATGGTGCCAAAGCATTCTTCATTGCTGTCATGGGAAAAACATGGGATGATTTAGTTGAAAATGAAGAAAATTGTCTCGGATTTGGAGTGACCAGTCATTGGGTCTTTGTTTTCTTCTTTCGCTTGTACATGTCCTGTCGGAGCCTGTACAGGCAAGCAATTAGCCTGATGCCCCCAAGTTCGTCTAGAAAGATGTCAACAGCAACTGGAGACTCATTCATGGCCTATTCTGCTTGTGATTGGACGCAGAGGACTGATTGGAGTGATGAAGGATATTTTTCATGGATAATTCAACCTTCAGCTTCTGTTCTTGTTGTTGTTCAATCTGTTTGTAGTCTTTATCATCAAAGCACCAACGTAGATGGGTACCCATTAATTTATGTATTGCTTACCATGACTCTTCAGAGGTTAGTGGATTTGAATAAGCAAATAGGCTCTCTCGAGTATTTGCACCAGAGAAATGAAAATTTGATGCAGGTTGAGGTGCTTAGTGATGATGACTTGTCAGTGTTACAGAAGAAGAGAAAAAAGATTGGAAGGCTTGTCTCTATTTTGCGAAAAGAAGCAGAAGATCTTACTGATTTCATGATGAGGCATTTATCTTTAGTAGCTAAACGTCAAATTTTGAATTCAACTTCAAATGATAAATCTACTGAAATGCTTTGTGAGATCGATGAATGGGACTTTAGTATCTGTAATGTGAATAAAAGGTCATTCCCCACAGCAGTTTGGTGGATTGTTTGCCAGAATATTGATATTTGGGCAGCTCATGCTGCTAAAAAGAAGTTGAAAATGTTTCTTTCTTTTTTAATTCCTACGTCTCTTCGCTTCTTAGCAAGCAATCATACTAAGATTGGAACACAACAAACCTGTGGATATCGGCAGCCAAAGAAAGTGTCTCTGCAACAAATTTCATCAGCTGTTCTTAGTGATCCCATCTTTTTTGAACACAGATTTGTATGTAGGTTTATGCCAGCAAGGTTTTGTCGTGAGTTGAAGGCTTCATTATTATCTTCTTTTCATGATATTAATAGAAGTTCAGCTGATTGGATGGAGGTGATAGCCACACTTGAGCATTTAACTATAGGCTTTTGCAGTGGCAAACATACTCCTGATGATAATGCTGTCCTTGCAAAAGCAGTTAATCGTTCGTCTGATATGTTGCATACAGAAGATTGCAAGTTGAAGGGTGATTCACCTCAAAGCAATGTGGGAATCAGAGATTGTCAGCATTTGATTAACTTTTTATGTTTGATGCCAATGGGGAATATGAGTTCAAGGTCCTTTTCCCTTTATATGACATATGTTCTCGAAGTTGAAAGGTATGCATTTTTTCTTCTTGGAGTGATATTGGTGAATGCTTTATTAGATAATCAGACTGCTCTATGTTCAAATCAATTTGAACTCCTCAAATTGTTTGCATCTTGTCGGAAGGCCTTGAAATATATATTTATGGCTTACTATGAGGCTGATAATAGACAAAGCTCATCTATTCCAATTCCATCTGAAAACCAATTTCCTGTTTTATGGCTTTTCAAGTCTTTATCGCTTGTTAATCAAATTCAAGAAGCTTCGCCAGGAGGTACTGATAGACAAATTAAGGACATCATCTTTTCATTGATGGATCATACGTCATACTTGTTTTTAACAACAAGCAAATATCAATTTAAAAAGGCTCTCTGCATAATTGTAAATGACAACAGACCGTGCAAGGGGCAACACCAGGACGTTTGCCAAGAACTAAATGATGGAGATGATCTATGTTTAGATTCCATTCACAGTGTAGAAGTATGCAATAGTGCAATTGGAATGAGTAACAGTCTGAAGGAACAGGTGGAGAGTGAACTTATCTCTCTGAAGAAGTCTAATTTTGCAGTTGGAGATGCTAAAAACAGTGCCGATATGTGTAAATTTAATTCTCTAGCCTCTTGCCTCAATGGATTTTTGTGGGGCCTAGCATCTGCTGTTGACAACACTGATTTGAGGAATGGTAACCGTCAAATGAGATCAATTAAGTTGAAATTTGAATATAGTTCTCAACTGAATCATTGCATGAATGCAATTTCAGAATTATTAGGGCTCATCTTGGAAATGTTTCTTGATAGAGACAGTCGGCCGACCAAATTGTGTGATTATCAAGCATCTCAGGACCTGTTGATCGTGAATGATCTCTCTGTTAAGCACAACTCTGAGGCTGATACTTCATTTAGTAAACATCGTGAATTAGAATCTTCTCATTGTGATGATGACAGTGAAAATGCTAGCACAAAAAGGAAAAGGTTGAAATTGGAAAATAAAAGCAGTTTTGCTTCTATTCTCAACGAGACCAAGTCAATTGAGATGCAATCCTTGAACCAACCCTTTTTGCGAGGTCTGCTGAAAGGTTCCTACCCTGAAGCAGCATTTGCACTTAAGCAGCTATTTCTTGCTGCTGCAAGAATTTTGAGATTGCATAAGCAATATGATACCACTCCTTTGTCATCAAGTTCTATGGCCATCCTAATTGGCGTTTCAAGATTCTTGTTGCTAGAATTTGTGAATATGGTTGAAGTGCCACAACCATTTTTGCTTGCATGCTTAGATGGTGTTCTAAAGTATTTGGAGGAATTAGGCCATCTGTTTCCTTCTGCTGATCCTGTGCAGTCCCGGAATCTATATTCTAGACTTGTAAATCTACATTTGAAAGCTGTAGGAAAGTGCATTTGTCTACAGGGAAAAAGAGCTACGTTAGCATCCCATGAGACGGAGTCCACTACAAAGACTCTTGATGGGGGATTATTCGAAGAATCATCTTTTCCTGGAGTCTACTGCATGGATGAATTTAAAGCGTCGTTGAGAATGTCATTCAAAGTGTTCGTAAGGGAAGCCTCGGAGTTGCATCTCTTATCTGCAGTTCAGGCTATAGAGAGAGCCCTAGTTGGAGTGCAGGAAGGAGCAATTAAGCCGAAAGGACGTAAATGCATGGGTGTGATTAAAAGACACATTGAAAGCTTAACTGCTGGTCTGTTTAGCATAGTTCTACACTTGCAAAGTCCACAAATTTTCTATGCAAGGATGGTTGCCACAAAAAATAGGAGGGATCCAGATCCGGGATCAGTCATTCTTATGTCTATTGAAGTACTTACAAGAGTTTCGGGGAAGCATGCTCTTTTCCAAATGAATGTTTCGCATGTAGCACAGTGTTTACGCATTCCTGCAGCACTTTTCGAAATTTTTTCTCTTAAGCTCCCAGGAATTCCCATTGAATCAGAATGTCCATTGATCTCAGCTCAGGAAGCCTCCAATGTAGTTGTAACCACGAGTTCTATTATAGATAAACAATTCTTAATAGATCTTTTTGCTGCCTGCTGCCGCTTATTATACACTATTCTCAAGCATCATAAAAGTGAGTGCAAGCGTTCCATTGCTCAACTACAGGCATCAGTGTCTGTTCTTCTTCATTCCCTTGAAAGAGTAGGTCCAGACCCGAAATTTTTGGGTGGTTACTTTTCATGGAACGTAGAAGAGGGAGTAAAGTGTGCATCTTTCCTCCGAAGGATTTATGAAGAGATAAGACAACAGCGGGATATTGTAGGGCGACACTGCTCCCTGTTTCTTTCAAATTACATTTGGGTTTACTCGGGACAAGGTCCCTTAAAATCTGGGATTAGAAGGGAAATCGACGAAGCGCTAAGGCCCGGTGTCTATGCTCTTATTGATGCTTGTTCAGCAGAGGATCTTCAATATCTTCACACTGTATTTGGCGAAGGTCCATGTAGAAACACCTTGGCAACTTTGCAGCAGGATTACAAACAATTTTTCCAATATGAAGGAAAAGTATGA 6156 38.32 MKSKKRKLKSPIKTVRPSKSARVFISPEVEVVDETERVEKLEQREVSQEFEEGCPWRNLELILFVQNKELDQQKKVEAVFSFVNSKLKEKDKYYDTVKISRLIVFLSDWVQSLLISSEKKAKNDGEKHINVVVEPCLDYRCWDIFKFCLEESVKTHITLNLSKNLLHAFCFVTRHAMSLLAASLSSKEELFGGDCFKLYNIVLDCVSLVFSPHMGLSNENLDAWISTIDAALEFLHIIYVNSLEGGDVGIFAIKFSCTMLEPFAKFLWIHPTKKTGFHNFVNKLLEPLLQLLRDISLKADGCNHWTRTLMKLLDEVLSHALFHTMHIDGFLCLHGSEKVMKSHDEKSEESKAHIKSYHRHLFDEVQKLVAGKKFLSLGAVGELFHVLVVRVKKVKGASMLFEDTKLNSKMGILGPLRDDISSHASSALQGSANVLSEKSNNESNLSTETRRSLFEFFVQILDPLLQTIELISAEIKLGSTLSDVHYLLKSINNVLASFMKEKVYLRTEDNSEGACHNFLKKVYNTIMLVSSHLLLLSRLEIENNIDLEVFVLAANEILVTLGYLLEIEYDVIGDDLVSLWMLILSYSAFNLSFTTVSKQHSLTSKIQELGCQLIVLYGQLRQVNISIFALCKATRAVISNETETEKGYASFMTSLGPEAYGKSVGMLLSSQEIKFAIHKAIKYIPEGQASGIIQQLTEDVTETLAWLKLCNMNLIIRNKMGGSDMQPVLLGRGLSEVYALMLDSLMITSGNAFQVGTSIANLVSVIRPSMSSLVGLQSDGAKAFFIAVMGKTWDDLVENEENCLGFGVTSHWVFVFFFRLYMSCRSLYRQAISLMPPSSSRKMSTATGDSFMAYSACDWTQRTDWSDEGYFSWIIQPSASVLVVVQSVCSLYHQSTNVDGYPLIYVLLTMTLQRLVDLNKQIGSLEYLHQRNENLMQVEVLSDDDLSVLQKKRKKIGRLVSILRKEAEDLTDFMMRHLSLVAKRQILNSTSNDKSTEMLCEIDEWDFSICNVNKRSFPTAVWWIVCQNIDIWAAHAAKKKLKMFLSFLIPTSLRFLASNHTKIGTQQTCGYRQPKKVSLQQISSAVLSDPIFFEHRFVCRFMPARFCRELKASLLSSFHDINRSSADWMEVIATLEHLTIGFCSGKHTPDDNAVLAKAVNRSSDMLHTEDCKLKGDSPQSNVGIRDCQHLINFLCLMPMGNMSSRSFSLYMTYVLEVERYAFFLLGVILVNALLDNQTALCSNQFELLKLFASCRKALKYIFMAYYEADNRQSSSIPIPSENQFPVLWLFKSLSLVNQIQEASPGGTDRQIKDIIFSLMDHTSYLFLTTSKYQFKKALCIIVNDNRPCKGQHQDVCQELNDGDDLCLDSIHSVEVCNSAIGMSNSLKEQVESELISLKKSNFAVGDAKNSADMCKFNSLASCLNGFLWGLASAVDNTDLRNGNRQMRSIKLKFEYSSQLNHCMNAISELLGLILEMFLDRDSRPTKLCDYQASQDLLIVNDLSVKHNSEADTSFSKHRELESSHCDDDSENASTKRKRLKLENKSSFASILNETKSIEMQSLNQPFLRGLLKGSYPEAAFALKQLFLAAARILRLHKQYDTTPLSSSSMAILIGVSRFLLLEFVNMVEVPQPFLLACLDGVLKYLEELGHLFPSADPVQSRNLYSRLVNLHLKAVGKCICLQGKRATLASHETESTTKTLDGGLFEESSFPGVYCMDEFKASLRMSFKVFVREASELHLLSAVQAIERALVGVQEGAIKPKGRKCMGVIKRHIESLTAGLFSIVLHLQSPQIFYARMVATKNRRDPDPGSVILMSIEVLTRVSGKHALFQMNVSHVAQCLRIPAALFEIFSLKLPGIPIESECPLISAQEASNVVVTTSSIIDKQFLIDLFAACCRLLYTILKHHKSECKRSIAQLQASVSVLLHSLERVGPDPKFLGGYFSWNVEEGVKCASFLRRIYEEIRQQRDIVGRHCSLFLSNYIWVYSGQGPLKSGIRREIDEALRPGVYALIDACSAEDLQYLHTVFGEGPCRNTLATLQQDYKQFFQYEGKV 2051
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6683880 6695467 + Lsi10G004610.1 Lsi10g00461 672018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00461 2051 MobiDBLite consensus disorder prediction 1513 1536 - -
Lsi10g00461 2051 Pfam Urb2/Npa2 family 1815 2050 IPR018849 -
Lsi10g00461 2051 PANTHER UNHEALTHY RIBOSOME BIOGENESIS PROTEIN 2 HOMOLOG 39 2051 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00461 - - - bhj:120089295 3572.33
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g98 . . . . . . Bma05g00411 . . . . . Car02g00212 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00461 . Chy11g00299 . . . . . . Bpe05g00307 . . . . . . . . . . Cpe05g01309 Bhi10g01894 . . . Hepe08g0949 . . Cla02g01117 Cam02g1190 . Cco02g1246 Clacu02g1180 Cmu02g1140 Cre02g1456 . Csa02g01350 . Cme11g00421
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010116 0 5 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00461 Lsi_Chr10 FPKM 0.561022 0.695624 2.476501 2.681981 0.421864 0.370513 0.308333 0.69162 1.022861 1.200035