Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00462 ATGGCGGCGGTCTCTACTTCTCTCGCATCTCAACTCTCACCTCTCCGATTCTCCACTTCCAACTCCGACATTTCTCATTCTCTTTTTCACAACGTCCACTCACAAATCCGCCTCGCTTCCTCCCGGAAAGGTTCCCGTGGCGTTGTCACCATGGCCGGCTCCGGCAAGTTCTTCGTTGGTGGAAACTGGAAATGTAATGGTACAAAGGAATCTATATCCAAGCTTGTCTCAGACTTGAACAATGCAAAGTTGGAGGATGATGTTGATGTTGTAGTAGCACCTCCATTTGTCTACATTGATCAGGTGAAGAGCTCATTGGCACCTAGGATTGAGATTTCTGCCCAAAACTCATGGGTGAGCAAGGGTGGCGCTTTTACTGGAGAAATCAGTGTTGAACAATTGAAAGATATAGGCTGCAAATGGGTCATCCTTGGGCACTCTGAACGAAGACATATCATTGGTGAAGATGACCAGTTTATAGGAAGGAAGGCTGCCTATGCCTTGAACGAGGGTCTTGGAGTAATAGCTTGCATTGGGGAATTACTAGAGGAAAGGGAAGCTGGGAAAACTTTTGATGTTTGCTTTCAACAATTGAAAGCTTATGCAGGCAAGTTACTGTCTCATTCCTCATTTCACTTTCACGATGATCTTACAATCACTAATGCTGTTCCAAGTTGGGATGGTATTGTTATCGCATATGAGCCAGTATGGGCCATTGGGACTGGCAAAGTGGCTACGCCCGACCAAGCACAGGAAGTGCATGCAGCAATTCGTGATTGGCTTAAGAAGAATGTATCACCAGAAGTAGCTTCTAAAACACGAATTATTTATGGAGGATCTGTGAATGGAAGTAATTGTGCTGAGCTTGCAAAAAAAGAGGATATAGATGGATTTCTAGTCGGAGGTGCTTCATTGAAGGGTCCTGAATTCGGAACAATTGTTAATTCTGTTACCGCCAAGAAAGTCGCTGCTTGA 975 44.82 MAAVSTSLASQLSPLRFSTSNSDISHSLFHNVHSQIRLASSRKGSRGVVTMAGSGKFFVGGNWKCNGTKESISKLVSDLNNAKLEDDVDVVVAPPFVYIDQVKSSLAPRIEISAQNSWVSKGGAFTGEISVEQLKDIGCKWVILGHSERRHIIGEDDQFIGRKAAYALNEGLGVIACIGELLEEREAGKTFDVCFQQLKAYAGKLLSHSSFHFHDDLTITNAVPSWDGIVIAYEPVWAIGTGKVATPDQAQEVHAAIRDWLKKNVSPEVASKTRIIYGGSVNGSNCAELAKKEDIDGFLVGGASLKGPEFGTIVNSVTAKKVAA 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6704726 6710168 - Lsi10G004620.1 Lsi10g00462 672019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00462 324 Pfam Triosephosphate isomerase 58 316 IPR000652 GO:0004807
Lsi10g00462 324 SUPERFAMILY Triosephosphate isomerase (TIM) 53 316 IPR035990 GO:0004807
Lsi10g00462 324 Hamap Triosephosphate isomerase [tpiA]. 55 316 IPR022896 GO:0004807|GO:0006096
Lsi10g00462 324 Gene3D Aldolase class I 33 323 IPR013785 -
Lsi10g00462 324 PANTHER TRIOSEPHOSPHATE ISOMERASE, CHLOROPLASTIC 3 322 - -
Lsi10g00462 324 ProSitePatterns Triosephosphate isomerase active site. 232 242 IPR020861 GO:0004807
Lsi10g00462 324 PANTHER TRIOSEPHOSPHATE ISOMERASE 3 322 IPR000652 GO:0004807
Lsi10g00462 324 TIGRFAM tim: triose-phosphate isomerase 58 306 IPR000652 GO:0004807
Lsi10g00462 324 CDD TIM 57 315 IPR000652 GO:0004807
Lsi10g00462 324 ProSiteProfiles Triosephosphate isomerase (TIM) family profile. 56 316 IPR000652 GO:0004807
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00462 K01803 TPI, tpiA; triosephosphate isomerase (TIM) [EC:5.3.1.1] - csv:101213372 564.688
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00462 Lsi-Chr10:6704726 Lsi10g01380 Lsi-Chr10:17930040 3.92E-94 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g110 . . . Bda08g01041 . . Bma05g00412 . . . Cma02g00330 Cma20g00770 Car02g00210 Car20g00673 . . . . . . . . . . . . . . . . . . . . Cone10ag1184 Lsi10g00462 . Chy11g00296 . . . . . . . . . . Cmo02g00325 Cmo20g00770 . . . . Cpe16g00296 . Bhi10g01892 . . . Hepe08g0946 . . Cla02g01114 Cam02g1187 . . Clacu02g1177 Cmu02g1137 . . Csa02g01353 . Cme11g00418
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008639 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00462 Lsi_Chr10 FPKM 15.433938 17.005068 24.684401 23.22419 9.236601 7.875768 8.482426 34.107731 36.146404 34.805092