Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00463 ATGGATCAACTAGTTCACCGCGACGATCTTGTTCAGAATCCGGCTGCACCCTCCACATCCATTGTACCATGTATTGAACTTCCAGGCCACCCAACTCGTTCTCAATCCAGTTCCAGGTCTGAAGGGGAGTTCAAGGATTCTGCAGCTGCTAGAAAAGTTCAGAAGGCCGACAGAGAGAAATTAAGAAGGGGCCGTTTGAATGAACAATTTGTCGAGCTGGGAAATATTTTAGATCCCGATAGGCCCAAAAATGACAAAGCAACCATTTTAATGGATACAATTCAATTGCTGAAGGATCTGACATCTCAAGTGAACAAATTGAAAACTGAATATGCTACTTTAACAGAAGAATCACATGAGCTAGCCCAGGAAAAGAGTGATCTGAGAGAAGAGAAGGTGTTGCTTAAATCTGATATTGAGAACCTTAATGCTCAGTATCAGCAGAAACTCAGGGCTACATACCCTTGGGCTGCCATGGATCACTCGGTTGTCATGGCCCCTGCTCCCTTTCCATTTCCAGTGCCGATGCAAATGCCTCCAGGGCCATTTCCCCTGCATCCATCCTTGCAGCCTTATACATTCTTTGGAAATCCGGATCCCAGGGTAATTGCAAACCCTTGTTCCACCTTCGTCCCATACATACCTCCTAATTCCTTGACCGAGCAGCAGTCCTCCCAAAACGCGCCACCTATCATTCAGTCAGGCAATCGGTCTCATAACTTGAGCGAGCAAAATACAGGGAGCAAGTCCTCAGTTGAAAGCAAGATTGAGAAAAGTGTAGATTCTAATGAAGTTGCAACTTACCTGGAGTTGAAAACTCCTGGATCTTCCTCAGATCAGGATACATCGTTTGAACAAACAAACGGTAAGAACAGAAAGGAAAATAACCTATCAGAAGAGAGTTCTTCAAGTAAATGTTCTTCATCTCGTAGTTTAGAGGCCAATACATCTAGTAACACGCCAAATGGACGAAAATCTACTGATATATGTGGAAACCCATAA 1002 44.01 MDQLVHRDDLVQNPAAPSTSIVPCIELPGHPTRSQSSSRSEGEFKDSAAARKVQKADREKLRRGRLNEQFVELGNILDPDRPKNDKATILMDTIQLLKDLTSQVNKLKTEYATLTEESHELAQEKSDLREEKVLLKSDIENLNAQYQQKLRATYPWAAMDHSVVMAPAPFPFPVPMQMPPGPFPLHPSLQPYTFFGNPDPRVIANPCSTFVPYIPPNSLTEQQSSQNAPPIIQSGNRSHNLSEQNTGSKSSVESKIEKSVDSNEVATYLELKTPGSSSDQDTSFEQTNGKNRKENNLSEESSSSKCSSSRSLEANTSSNTPNGRKSTDICGNP 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6712227 6715789 - Lsi10G004630.1 Lsi10g00463 672020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00463 333 MobiDBLite consensus disorder prediction 269 285 - -
Lsi10g00463 333 MobiDBLite consensus disorder prediction 44 60 - -
Lsi10g00463 333 MobiDBLite consensus disorder prediction 215 333 - -
Lsi10g00463 333 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983
Lsi10g00463 333 MobiDBLite consensus disorder prediction 1 60 - -
Lsi10g00463 333 SMART finulus 56 106 IPR011598 GO:0046983
Lsi10g00463 333 PANTHER TRANSCRIPTION FACTOR BHLH121 32 322 IPR044579 GO:0003700|GO:0055072
Lsi10g00463 333 MobiDBLite consensus disorder prediction 215 253 - -
Lsi10g00463 333 CDD bHLH_AtILR3_like 55 129 - -
Lsi10g00463 333 PANTHER TRANSCRIPTION FACTOR BHLH121 32 322 - -
Lsi10g00463 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 50 100 IPR011598 GO:0046983
Lsi10g00463 333 Gene3D - 48 133 IPR036638 GO:0046983
Lsi10g00463 333 Coils Coil 90 152 - -
Lsi10g00463 333 MobiDBLite consensus disorder prediction 300 333 - -
Lsi10g00463 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 120 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01473 Lsi-Chr6:25240732 Lsi10g00463 Lsi-Chr10:6712227 1.60E-18 dispersed
Lsi10g00160 Lsi-Chr10:2566969 Lsi10g00463 Lsi-Chr10:6712227 2.71E-15 dispersed
Lsi01g00601 Lsi-Chr1:4802303 Lsi10g00463 Lsi-Chr10:6712227 7.64E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26020 PF00010 HLH 1.30E-07 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00463 - - csv:101213608 547.354