Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00464 ATGTCGGGCATGGGAGATGGGTACGTGGGCACTGCCCAGGACGCCGTCAGGATTCGAAGGCTCGAGAAGCAAAGAGAAGCGGAGCGCCGGAAAATCCAAGAGCTTAAGGCCAAGACTGCCTCCGCCAAAGGCCAGCCTGGTCTCCTTCAATTTGGCTCCAGTACCTCCGAGATTCTCGACACAGCGTTCAAGAAGGAAACTGTTGGTTTGGTGACGAGAGAAGAGTATGTTGAGAAGAGGGTGAATATTCGAAACAAAATTGAAGAAGAGGAGAAGGAGAAACTTCAAAAGCTACAACAAGAGGAAGAAGAACTCCAATTGCAGAAACGGAGGAAAAGGAAAATAAGGGGGAACTCACGTTTGTCTTTTTCTGATGATTTTGAGAATGGAAGTGATGAGGATGATGATAATAAAAATTCGGAGTCAAAAAAGCTTGGTCGTGGTAAACTTGGCAAAGATCCTACAGTGGAGACTAGCTTTTTGCCTGATAGTGAGCGGGAAGCTGAGGAGCAGGCTGAGCGTGAAAGGCTGAAGAGACAGTGGCTTCGGGAGCAGGAACAAATTCGAAATGAGCCTCTTGAAATCACTTACAGTTATTGGGATGGAGCTGGCCATAGGCGAGTCATTCAGGCACGAAAAGGTGATACAATTGGAGAGTTTCTGAGGGCTGTACAGCAGCAACTTGCCCCAGAGTTTCGTGAGATTAGGACTACCTCGGTAGAGAATTTGCTATACGTGAAAGAGGATCTTATAATACCTCATCAACACAGCTTCTATGAGCTTATCGTGAACAAAGCTAGAGGCAAAAGTGGCCCACTTTTCCACTTTGACGTACACGAGGATGTTCGGACAATTGCCGATGCAACAATAGAGAAGGATGAGTCTCATGCCGGGAAAGTTGTTGAGAGGCACTGGTATGAGAAGAATAAGCACATCTTTCCTGCTTCAAGATGGGAGGCTACGACAGTCTTCGGAGCTCTCGATCATGGCGTCGAAGGCCTTCAGGATTTTCTTTCTTGCGCTCCTTCTCCTTGCGTCGCCTTTTCTCCAAGATTTAATCGAATTTCGATCTCGCTTGCACGGTTACAGTTTCAATTCTCCATTTCATTGAGATCTGGTTACATTTATGCATTTCTCTCTGGTTCTATTGCATTTGGTGTTAGAGCTTCGTCGGATTTCTGTTGGATCTTATGTCAATCGGATGCGGATGTGGAATCTGAAGATGCCGCCGTTGATGATGCCACTGACTTGGGGATTGTTGGGGAGGATGAGCTAGATTTTGGTGATGGGAGCTTCAGCGCAGCTCCAGGGGTTGAGACCGTGTGTGTTTTCCCCAAAAATAGCGCACGTTTAGTGGTGGCCGGAGAAGAGACTGAACTATTAGCAGGAGTGAAAAATAATGGGGATTCCAGCTTGAATGTCATTGCAATAAAGGCCAGTGTTCATTACACCTTCGATCACCGATTACTGATTCAAAATCTTACCGCACAGGCTTTTAACAATGCATCGGTACCAGCATCGTCACAGGCTACTTTCCCATACCTTTTTGCTGTCAGCAAATATCTTCAGTCTGGGAATTTTGATCTCGTTGGAACCATTATCTATGAAATAGATCAGCATCCATATCAAAGTACCTTCTTCAATGGTACCATTGAAGTTGCTGAAGCTAGTGGTTTTCTCAGCATTGAATCTGTATTTCTTGTTACGCTTGGAATTGCACTTATCGTGCTGCTTGGTTTATGGATTCATGGTCAAATACAGAATCTTTCCAAGAAAACCAAGAGGGCTCCTAAGGTTGAAGTTGGAACCAAGGCCTCAGATGCTTCATTGGACGAATGGCTTGAGGGTACTGCATATTCTCAGTCATCGTCAAACAAATCAAAGAAAAAGAAGTAG 1896 45.31 MSGMGDGYVGTAQDAVRIRRLEKQREAERRKIQELKAKTASAKGQPGLLQFGSSTSEILDTAFKKETVGLVTREEYVEKRVNIRNKIEEEEKEKLQKLQQEEEELQLQKRRKRKIRGNSRLSFSDDFENGSDEDDDNKNSESKKLGRGKLGKDPTVETSFLPDSEREAEEQAERERLKRQWLREQEQIRNEPLEITYSYWDGAGHRRVIQARKGDTIGEFLRAVQQQLAPEFREIRTTSVENLLYVKEDLIIPHQHSFYELIVNKARGKSGPLFHFDVHEDVRTIADATIEKDESHAGKVVERHWYEKNKHIFPASRWEATTVFGALDHGVEGLQDFLSCAPSPCVAFSPRFNRISISLARLQFQFSISLRSGYIYAFLSGSIAFGVRASSDFCWILCQSDADVESEDAAVDDATDLGIVGEDELDFGDGSFSAAPGVETVCVFPKNSARLVVAGEETELLAGVKNNGDSSLNVIAIKASVHYTFDHRLLIQNLTAQAFNNASVPASSQATFPYLFAVSKYLQSGNFDLVGTIIYEIDQHPYQSTFFNGTIEVAEASGFLSIESVFLVTLGIALIVLLGLWIHGQIQNLSKKTKRAPKVEVGTKASDASLDEWLEGTAYSQSSSNKSKKKK 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6718804 6731088 + Lsi10G004640.1 Lsi10g00464 672021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00464 631 MobiDBLite consensus disorder prediction 121 172 - -
Lsi10g00464 631 Pfam Translocon-associated protein (TRAP), alpha subunit 402 616 IPR005595 GO:0005789
Lsi10g00464 631 MobiDBLite consensus disorder prediction 136 151 - -
Lsi10g00464 631 Coils Coil 18 45 - -
Lsi10g00464 631 Coils Coil 73 118 - -
Lsi10g00464 631 Pfam XAP5, circadian clock regulator 90 319 IPR007005 GO:0005634
Lsi10g00464 631 Coils Coil 165 185 - -
Lsi10g00464 631 PANTHER XAP-5 PROTEIN-RELATED 1 209 IPR007005 GO:0005634
Lsi10g00464 631 PANTHER XAP-5 PROTEIN-RELATED 210 320 IPR007005 GO:0005634
Lsi10g00464 631 PANTHER BNAA04G11980D PROTEIN 1 209 - -
Lsi10g00464 631 PANTHER BNAA04G11980D PROTEIN 210 320 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00464 K13119 FAM50, XAP5; protein FAM50 - csv:101213848 557.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00464 Lsi-Chr10:6718804 Lsi11g01181 Lsi-Chr11:20293345 1.99E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g113 . . . . Bpe07g00487 . Bma05g00414 . Cmo19g00733 . Cma02g00327 . Car02g00208 . Sed05g2236 Cpe04g00576 Cpe15g00579 Bhi05g01745 Tan02g0712 Cmetu01g0699 . Hepe02g0443 . . . . . . . . . Cone12ag1213 Cone8ag1265 . Cone10ag1183 Lsi10g00464 Csa07g00080 Chy11g00293 Cme01g01284 . . . . . . . . Sed01g0219 Cmo02g00322 Cmo20g00768 Cma11g01395 Cma19g00724 . Car19g00553 Cpe16g00298 Cpe05g01312 Bhi10g01888 Tan05g1184 Cmetu11g1977 . Hepe08g0943 . . Cla02g01111 Cam02g1183 . . Clacu02g1173 Cmu02g1133 . . Csa02g01356 Chy01g00697 Cme11g00415
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008443 1 2 2 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00464 Lsi_Chr10 FPKM 18.822994 20.753538 18.9492 17.981005 19.792721 17.461115 21.273746 12.2939 11.775318 14.112496