Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00468 ATGAATGGAGGTGATGAATTGAACAGGTTGATATTGAGCGATCTTTATTATCATCTACAGGGAGAGCTTGAAGGCCGTAGTATTGGCTCTGGAGCTTTCAGAGAGCTTTCTCTATACCTTATTGATTCTGAAATTTTCCATTCTCACCAACATAACTATGAGGATGACATTTTTGTGACCATCAAAGATTCATACTTGTTTGACCTCGTGCATATACAGGCAGATTTGGGATTAGATCTATGGGATTATTCAGAATGGAAAGAATCTAAGGCGATTGCAGCAAGAATGCTTAGGTGCATGGAGGATGTAAACTCAATGATGCTGGTCACTAGATCAAAAATTACTGCTTTGAAAGCATTGATAACCATCTTAACTTTGATGGCCGATGATACATTGGAGAAAGAGACTACAATTAGAAAAAAGATTATTGACCATCTTGTTAGATATTGCATTGCTGACATATCGCATTATCTCGACATGACTATTGAATCATTAGCATTCGGTTTGGGTGTCTCCCATTGTGTCCTTTGTTTTCTTACTGCCCAATTGGAATTGGTAATTCTCCTTATCAGATCTGCAGATAAAACTGTGCCAATGTCTGTTTGTGCACTTATTTTAAAGACCTCAGGCTCCGGTCTCAAACAGTTAGGTTGCATCCAACCAGCTGCTGGCGCTCATAAGACAATTAATCTCTTATTGAAGTTGGTTCTTTCTTCTGTGGAATGTCATGGTGTTAATTCATTTTCAGATCGAGAAAGTAACCCTGAATATGTCAAAGACTTCGCTGAATTTTCTAATGTTTTGTTGGGGCTTCTACCTATATTATGTAGCTTCATCACAAATGCTGAGCACTGCACCCTGGCTTTGACTACTCTAGACTTGATACTAAGAAAATTTTTGTCGTCTGAGACATGGCTTCCCGTCTTACAGAAGCATCTTCAGCTGCAACATCTTTTTCTAAAGCTTCAGGATGAAAAACATTTGTCTTCTGTCCCTATATTAATGAAGTTCTTCTTGACCCTTGCTCGTGTACGGGGAGGTGCTAATATGCTCATAACATCTGGTCTCTTGTCATATCTTCAGCTGTTGTTTACTCAATTTTTGGATGACAGTATTTGCTCGCAATTCAACTATAACAAAAATAACTTAATCTCTGGTGATAGAGGTCAAAATCACCAACTGATTTGGAAACTTGGATTAGCTGTTATCACTGCTGTAGTGCAATCTTTGGGAGATGGTTCTTACCTAGATATTCTTGAGAATGTGATGAACTACTTTTTCTCAGAGAAAGTGTATCTGATCTCCTACCATCTCAATGCACCAGACTTCTCCCCTGGTGAGCACGACAAGAAAAGGTCACGGACTCAAAGAACTAAAACTTCTCTCGATGCTCTCAGGGAGACAGAACAAACTCTCATGCTGATGTGCGTGCTAGCAAGACATAGAAACTCTTGGGCTAAGGCAACCAAAGAAATTGATTCCCAGCTGCGTGAGAAATGCATACATATGTTGGCTTTTGTTAGTCGAGTGACTCATCGCCATGGAGAATCTCCTGTCAGGGTTCCTCCTTTCACATGTCCTCCAAACCTCAAAGAGGAGTTTGATCATTGCAAGAAACCATCTTTTATCCACAGCAAAAGTGGATGGTTTGCTCTTTCGCCTCTTGCTTGCGGATTAAAACCTGAGTACACTGCTCCCTCAATGTCTTTGATAGTTAAGGATCATCAAACCACCGAAAATGCAAATCCAGTTTGTCCAACATACTTTTCTGATAGTCTGGCCATGCATATCTATACAATTACATTTCTTCTTTTGAAGTTTTTATGTCTACAAGCTGAGGGGGCTGCTCGAAAGGCTGAAGATGTGGGTTATGTTGATCTCACACATTTTCCCGAGCTTCCAATGCCTGAAATTTTACATGGGTTGCAGGTATTGCTGTAA 1941 39.98 MNGGDELNRLILSDLYYHLQGELEGRSIGSGAFRELSLYLIDSEIFHSHQHNYEDDIFVTIKDSYLFDLVHIQADLGLDLWDYSEWKESKAIAARMLRCMEDVNSMMLVTRSKITALKALITILTLMADDTLEKETTIRKKIIDHLVRYCIADISHYLDMTIESLAFGLGVSHCVLCFLTAQLELVILLIRSADKTVPMSVCALILKTSGSGLKQLGCIQPAAGAHKTINLLLKLVLSSVECHGVNSFSDRESNPEYVKDFAEFSNVLLGLLPILCSFITNAEHCTLALTTLDLILRKFLSSETWLPVLQKHLQLQHLFLKLQDEKHLSSVPILMKFFLTLARVRGGANMLITSGLLSYLQLLFTQFLDDSICSQFNYNKNNLISGDRGQNHQLIWKLGLAVITAVVQSLGDGSYLDILENVMNYFFSEKVYLISYHLNAPDFSPGEHDKKRSRTQRTKTSLDALRETEQTLMLMCVLARHRNSWAKATKEIDSQLREKCIHMLAFVSRVTHRHGESPVRVPPFTCPPNLKEEFDHCKKPSFIHSKSGWFALSPLACGLKPEYTAPSMSLIVKDHQTTENANPVCPTYFSDSLAMHIYTITFLLLKFLCLQAEGAARKAEDVGYVDLTHFPELPMPEILHGLQVLL 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6798125 6800623 + Lsi10G004680.1 Lsi10g00468 672025

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00468 646 PANTHER NUCLEOPORIN NUP188 HOMOLOG 3 643 IPR044840 GO:0017056
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00468 K14311 NUP188; nuclear pore complex protein Nup188 - csv:101204633 1117.45
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g118 . Blo15g00650 . . . . . . . . . . Car02g00206 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00468 . Chy11g00289 . . . . . . . . . . Cmo02g00320 . . . . . . Cpe05g01314 Bhi10g01884 . . . Hepe08g0266 . . Cla02g01129 Cam02g1204 Cec02g1214 Cco02g1257 Clacu02g1194 Cmu02g1155 Cre02g1466 . Csa02g01359 . Cme11g00412
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004608 1 2 2 1 0 3 1 2 3 2 1 1 0 1 1 1 3 1 1 2 1 1 1 2 2 1 1 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00468 Lsi_Chr10 FPKM 2.723684 0.0 0.0 0.765265 3.845589 3.352036 4.917374 0.0 0.0 0.0