Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g00469 | ATGGCGGCAACTGTCTCACCGTGGGGCAAGCCCGGAGCTTGGGCTTTGGATGCGGAGGAGCATGAGGCGGAGCTTCTCAAGGACCAGCAGGACCAGTCTCGCCAGCAATCGGAGCCCAGTGCCGACTTTCCATCCCTCGCCGCCGCGGCTGCCACCAAGCCCAAGAAGAAGAAAGGTCAGTCCATTCCCTTGTCGGAGTTTCATACCTATGGAGGTCCAAAGCCGTCCGCTCAATCCAGTGATCCAAAGGGTCTTACGGCCGAAGATCTAATGATGCTTCCGACGGGTCCGCGTCAGAGAACGGCGGAGGAGATGGACCGCAACCGTCTTGGTGGAGGGTTCAAGAGTTGGGGTCAGAATAGTTTGTATGACAGGGGGAATCGGTATTCTAACGCGGAAGATTCGCCGAATTCTCGACGGGGTTCTAGGGTTTTTGATGAGTCAAGGAGGAGCAATGATGGATCTGATAGAGAATTCAGAAGGGAATCGTTGCCTTCTAGGGCTGATGAGATTGATGATTGGGGAGCCGGGAAGAAGCCTATGATGGGTAATGGGTTTGAGAGAAGAGAGAGAGGAGGAGGAGGAGGTTTTTTCGATTCGCAGTCGTCGAAAGCCGACGAATCGGATAGTTGGGTATCGAGTAAGAGCTTTACACCTTCTGAAGGTCGGAGATCAGGCGGTATGGGTGGCGGTTTTGAGAGAGAGCGAAGAGGAGGATTTCCCTCGAGCGGCGGTGGCGCCGATTCAGACAGTTGGGGCAGAAAATCTGAAGGGGCTAGAGGTGGAATTGGTGAGAACGGTGGTGGGGCTGATTCGGAGAATTGGGGCAAAAGATCTGAAGGGGTTAGAGGTGGAATTGGTGAGAGGCCGAGGCTTAATCTGCAGCCTCGTTCAATCCCTTTGAACAATGGGAATCAGGAGGCTTCTGGTGCTGTAGTAAAGCCAAAGGGTTCCAATCCTTTTGGAAATGCAAGACCAAGGGAACAGGTATTGGCTGAAAAGGGGCAAGACTGGAAGAAGATTGATGAGCAACTCGAATCAATGAAAATTAAGGATACGGTGGAGAGAACCGAGAAATCTAGTGGGGCTTCGTTTGAAAGAAAAGGCTTTGGAGTTAGAAGTGGTCGGTCTCCCGAAGATCGGTCAGGAAGGAGTTGGAGGAAGCCAGAGTCTGTGGAGTCTCGTCCCCAAAGTGCTGAGGTGGTTGAAGATGGACCTGCTGAGGAAAATTGA | 1233 | 52.64 | MAATVSPWGKPGAWALDAEEHEAELLKDQQDQSRQQSEPSADFPSLAAAAATKPKKKKGQSIPLSEFHTYGGPKPSAQSSDPKGLTAEDLMMLPTGPRQRTAEEMDRNRLGGGFKSWGQNSLYDRGNRYSNAEDSPNSRRGSRVFDESRRSNDGSDREFRRESLPSRADEIDDWGAGKKPMMGNGFERRERGGGGGFFDSQSSKADESDSWVSSKSFTPSEGRRSGGMGGGFERERRGGFPSSGGGADSDSWGRKSEGARGGIGENGGGADSENWGKRSEGVRGGIGERPRLNLQPRSIPLNNGNQEASGAVVKPKGSNPFGNARPREQVLAEKGQDWKKIDEQLESMKIKDTVERTEKSSGASFERKGFGVRSGRSPEDRSGRSWRKPESVESRPQSAEVVEDGPAEEN | 410 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 6804811 | 6807008 | + | Lsi10G004690.1 | Lsi10g00469 | 672026 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g00469 | 410 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B | 1 | 394 | IPR010433 | GO:0003743 | |
Lsi10g00469 | 410 | MobiDBLite | consensus disorder prediction | 372 | 394 | - | - | |
Lsi10g00469 | 410 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B3 | 1 | 394 | - | - | |
Lsi10g00469 | 410 | Coils | Coil | 16 | 36 | - | - | |
Lsi10g00469 | 410 | MobiDBLite | consensus disorder prediction | 15 | 31 | - | - | |
Lsi10g00469 | 410 | MobiDBLite | consensus disorder prediction | 120 | 138 | - | - | |
Lsi10g00469 | 410 | MobiDBLite | consensus disorder prediction | 139 | 176 | - | - | |
Lsi10g00469 | 410 | MobiDBLite | consensus disorder prediction | 1 | 327 | - | - | |
Lsi10g00469 | 410 | Pfam | Plant specific eukaryotic initiation factor 4B | 227 | 361 | IPR010433 | GO:0003743 | |
Lsi10g00469 | 410 | Pfam | Plant specific eukaryotic initiation factor 4B | 7 | 255 | IPR010433 | GO:0003743 | |
Lsi10g00469 | 410 | MobiDBLite | consensus disorder prediction | 352 | 410 | - | - | |
Lsi10g00469 | 410 | MobiDBLite | consensus disorder prediction | 201 | 221 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi10g00469 | Lsi11g01184 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi08g01639 | Lsi-Chr8:24272409 | Lsi10g00469 | Lsi-Chr10:6804811 | 8.31E-32 | dispersed | |
Lsi10g00469 | Lsi-Chr10:6804811 | Lsi11g00933 | Lsi-Chr11:13387510 | 2.55E-38 | dispersed | |
Lsi10g00469 | Lsi-Chr10:6804811 | Lsi11g01184 | Lsi-Chr11:20325688 | 2.10E-138 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g00469 | - | - | csv:101214573 | 685.256 |