Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00469 ATGGCGGCAACTGTCTCACCGTGGGGCAAGCCCGGAGCTTGGGCTTTGGATGCGGAGGAGCATGAGGCGGAGCTTCTCAAGGACCAGCAGGACCAGTCTCGCCAGCAATCGGAGCCCAGTGCCGACTTTCCATCCCTCGCCGCCGCGGCTGCCACCAAGCCCAAGAAGAAGAAAGGTCAGTCCATTCCCTTGTCGGAGTTTCATACCTATGGAGGTCCAAAGCCGTCCGCTCAATCCAGTGATCCAAAGGGTCTTACGGCCGAAGATCTAATGATGCTTCCGACGGGTCCGCGTCAGAGAACGGCGGAGGAGATGGACCGCAACCGTCTTGGTGGAGGGTTCAAGAGTTGGGGTCAGAATAGTTTGTATGACAGGGGGAATCGGTATTCTAACGCGGAAGATTCGCCGAATTCTCGACGGGGTTCTAGGGTTTTTGATGAGTCAAGGAGGAGCAATGATGGATCTGATAGAGAATTCAGAAGGGAATCGTTGCCTTCTAGGGCTGATGAGATTGATGATTGGGGAGCCGGGAAGAAGCCTATGATGGGTAATGGGTTTGAGAGAAGAGAGAGAGGAGGAGGAGGAGGTTTTTTCGATTCGCAGTCGTCGAAAGCCGACGAATCGGATAGTTGGGTATCGAGTAAGAGCTTTACACCTTCTGAAGGTCGGAGATCAGGCGGTATGGGTGGCGGTTTTGAGAGAGAGCGAAGAGGAGGATTTCCCTCGAGCGGCGGTGGCGCCGATTCAGACAGTTGGGGCAGAAAATCTGAAGGGGCTAGAGGTGGAATTGGTGAGAACGGTGGTGGGGCTGATTCGGAGAATTGGGGCAAAAGATCTGAAGGGGTTAGAGGTGGAATTGGTGAGAGGCCGAGGCTTAATCTGCAGCCTCGTTCAATCCCTTTGAACAATGGGAATCAGGAGGCTTCTGGTGCTGTAGTAAAGCCAAAGGGTTCCAATCCTTTTGGAAATGCAAGACCAAGGGAACAGGTATTGGCTGAAAAGGGGCAAGACTGGAAGAAGATTGATGAGCAACTCGAATCAATGAAAATTAAGGATACGGTGGAGAGAACCGAGAAATCTAGTGGGGCTTCGTTTGAAAGAAAAGGCTTTGGAGTTAGAAGTGGTCGGTCTCCCGAAGATCGGTCAGGAAGGAGTTGGAGGAAGCCAGAGTCTGTGGAGTCTCGTCCCCAAAGTGCTGAGGTGGTTGAAGATGGACCTGCTGAGGAAAATTGA 1233 52.64 MAATVSPWGKPGAWALDAEEHEAELLKDQQDQSRQQSEPSADFPSLAAAAATKPKKKKGQSIPLSEFHTYGGPKPSAQSSDPKGLTAEDLMMLPTGPRQRTAEEMDRNRLGGGFKSWGQNSLYDRGNRYSNAEDSPNSRRGSRVFDESRRSNDGSDREFRRESLPSRADEIDDWGAGKKPMMGNGFERRERGGGGGFFDSQSSKADESDSWVSSKSFTPSEGRRSGGMGGGFERERRGGFPSSGGGADSDSWGRKSEGARGGIGENGGGADSENWGKRSEGVRGGIGERPRLNLQPRSIPLNNGNQEASGAVVKPKGSNPFGNARPREQVLAEKGQDWKKIDEQLESMKIKDTVERTEKSSGASFERKGFGVRSGRSPEDRSGRSWRKPESVESRPQSAEVVEDGPAEEN 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6804811 6807008 + Lsi10G004690.1 Lsi10g00469 672026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00469 410 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 1 394 IPR010433 GO:0003743
Lsi10g00469 410 MobiDBLite consensus disorder prediction 372 394 - -
Lsi10g00469 410 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B3 1 394 - -
Lsi10g00469 410 Coils Coil 16 36 - -
Lsi10g00469 410 MobiDBLite consensus disorder prediction 15 31 - -
Lsi10g00469 410 MobiDBLite consensus disorder prediction 120 138 - -
Lsi10g00469 410 MobiDBLite consensus disorder prediction 139 176 - -
Lsi10g00469 410 MobiDBLite consensus disorder prediction 1 327 - -
Lsi10g00469 410 Pfam Plant specific eukaryotic initiation factor 4B 227 361 IPR010433 GO:0003743
Lsi10g00469 410 Pfam Plant specific eukaryotic initiation factor 4B 7 255 IPR010433 GO:0003743
Lsi10g00469 410 MobiDBLite consensus disorder prediction 352 410 - -
Lsi10g00469 410 MobiDBLite consensus disorder prediction 201 221 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi10g00469 Lsi11g01184 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01639 Lsi-Chr8:24272409 Lsi10g00469 Lsi-Chr10:6804811 8.31E-32 dispersed
Lsi10g00469 Lsi-Chr10:6804811 Lsi11g00933 Lsi-Chr11:13387510 2.55E-38 dispersed
Lsi10g00469 Lsi-Chr10:6804811 Lsi11g01184 Lsi-Chr11:20325688 2.10E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00469 - - csv:101214573 685.256