Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00470 ATGGCCACCGGCTTAATCAGCCAAATCAAAGGACAGGATTTCACGATTGAAGAAGCTACAATCGAGGAAATCCAGAGAGCTTTTTCCGATGAAAGGCTCACATCGAGAATACTAGTGGATTTCTACTTAAAACAAATTGAAGCCATAAATCCGATGCTTAGAAGCGTGGTGGAGGTGAATCCGGAGGCGAGGGATGAAGCGGATGAGGCGGACCGGAGGCGGAGAGAGGCGAATGTGAACCGGTTGCCGGTCGGAGGCCTCGACGGCATCCCGGTGCTGGTGAAGGACACTATTGCGACGAAGGACAAGATGAATACGACGGCTGGATCGTACGCATTGGTGGGATCGGTGGTGGCTCGGGACGCCGGCGTCGTTGAGAGGCTGAGGAAAGCTGGGGCGGTGATTTTGGGGAAAGCGAGCATGAGCGAGTGGTACTCGTTTCGGGCTTTGGGTCACGTGCCCAATGGGTGGTGCGCACGTGCCGGTCAAGGCCTGAATCCTTATGTAGCATCCGGTGAGACCTGCGGGTCGAGCAGTGGCTCTGCCATTTCTGTTGCTGCTAACATGGTGGCAGTCTCACTCGGCACTGAAACTCATGGCTCCATCCTCTGTCCCTCCGATCACAACTCCGTCGTAGGATTCAAACCGACAGTCGGCCTCACTACCCGAGCTGGAGTCATTCCCATCATGTCTCATCACGACACAGAGAAAATCAAAGAATATGGACAAGCCACTTTCATTCAATCAGAGAAAACAGATGGATTTGGGGAGAAAGAAAAGAAGGCAATCGAAACAATGGCAAATCTATCGCGAAATGGATTCGAGAAGTTAATGAGAGAAAATGAGTTGGACGCGATCATTACACCGGGATCTGGCTGTGTTTCGGTGCTGGCGATCGGAGGATACCCTGGAATTACTGTCCCTGCAGGATATGGTAAAGACGATGAAGTGAATCCAGATGCTTTACACCAAGCCTCTCGAGCCGACCTCGAGCGCAAGAGAAACGCCCCGATCACTTTGTCTCCATTGCATGGCATTCCTGTACTTCTAAAAGATAACATTGGAACCAAGGATAAACTCAACACAACGGCTGGCTCTTTTGCTCTGCTTGGCTCTATTGTTCCTCGTGATGCAGGGGTGGTGACGAAGTTGAGGAAGGCAGTAGTTGGCATTAGGCCAACAGTAGGTCTCACCAGTCGAGCAGGGGAAAAGCTAAAGGAGTATGGTCAGGAGTTATTTCTAAAAGCAGAAGCTACAAAAGGAATTGGAGTTGTAGAAAAGGCAGCATTAACCAGATTAGCAACACTGTCAAAAAAGGGATTTGAGAGAGTAATGATTAAGAATAAGCTTGATGCAATAGCAGCTCCTGGTTGGGCAATATCTCCTGTTCTTGCAATTGGAGGTTTTCCTGGAATTAGTGTACCAGCTGGATATGACCCTGAAGGAGTTCCCTATGGCATCGGCTTTGGAGGATTAAAGGGCTTTGACACTGACTTCCCCATTGAAGAAGCAACTGTGAAAGATCTCCAACTTGCTTTCTACCAAAACAAACTCACCTCCAGGCAACTTGTCGAGTTTTACCTCAAACAAGTGCGTAGATTTAACCCCATTCTGAAAGGGATCATAGAAGTGAATCCAGATGCTTTAGATCAAGCCTCCATAGCCGACAACGAGCGCAAGAGAAACTCGCTGAGCACTTTGTCTCCATTGCACGGCATTCCTGTACTTCTAAAAGATAACATTGCAACCAGGGATAAGCTCAATACAACGGCTGGCTCTTTTGCTTTGCTTGGCTCTATTGTTCCTCGTGATGCAGGGGTGGTGACCAAGTTGAGGAAGGCAGGTGCAATTATCTTTGGGAAAGCGAGCCTGAGCGAGTGGTCTGATTTCAGGTCCTATGAACCACCCAATGGTTGGAGCGCTAGGGGTGGCCAAGGAAAGGAAAAGCTAAAGGAGTATGGTCAGGAGTTATTTCTAGAAGCAGAGGCCACAAAAGGAATCGGAGATGCAGAAAAGGCAGCATTAGCCAGATTAGCAAAACTGTCAAAAGACGGATTTGAGAGATTGATGATTAAGAATAAGCTTGATGCAATAGCAGCTCCTGGTCGGTTAATCTCTCCTGTTCTTGCAATTGGAGGTTTTCCTGGAGTTAGTGTACCGGCTGGATATAACCCTCAAGGGGTTCCCTGTGGCAATGGCTTCGGAGGATTAAAAGGGCTAGCGATCGGGCTTCTTGTCCTCTTCCTCGCCGCCATATCTGCGCGTTCCGAGTACTACTCAAAAACTGCCCCGAGGGTTCAGTTAAAGGAGAAGGTAACCAATCTCCATTTCTTCCTTTTCGACATCCTGAGCGGCAAAAAACCCAGCGCCGTCGAAGTGGGGCACTCAAACATCACCATAGGCGACCAGTCGGCGACTCGATTCGGCAGCGTGTACGCCGTCGACGACCCGCTACGGGAGGGACCCGATCCGAATTCGAAAGTGATCGGCAACGCGCGAGGGCTATACGTATCGGCAAGCCAAGACGCAGATTTGTGTTTGGTGATGTATATTGATTACGGTTTCACAACCGGGAAGTACAACGGCAGCTCCATCAGCGTGTTTTCGAGGAATCCGGTGACGGAGTCGAAACGGGAGGTGGCGGTTGTCGGCGGGAGAGGGAAGTTTAAGATGGCTCGAGGGTTTGCGAAGCTTAAGACACATTACTTGAATGCCACTAATGGCGATGCCATTATAGAGTATAATGTTACTGTGTTTCATTACTAA 2766 49.42 MATGLISQIKGQDFTIEEATIEEIQRAFSDERLTSRILVDFYLKQIEAINPMLRSVVEVNPEARDEADEADRRRREANVNRLPVGGLDGIPVLVKDTIATKDKMNTTAGSYALVGSVVARDAGVVERLRKAGAVILGKASMSEWYSFRALGHVPNGWCARAGQGLNPYVASGETCGSSSGSAISVAANMVAVSLGTETHGSILCPSDHNSVVGFKPTVGLTTRAGVIPIMSHHDTEKIKEYGQATFIQSEKTDGFGEKEKKAIETMANLSRNGFEKLMRENELDAIITPGSGCVSVLAIGGYPGITVPAGYGKDDEVNPDALHQASRADLERKRNAPITLSPLHGIPVLLKDNIGTKDKLNTTAGSFALLGSIVPRDAGVVTKLRKAVVGIRPTVGLTSRAGEKLKEYGQELFLKAEATKGIGVVEKAALTRLATLSKKGFERVMIKNKLDAIAAPGWAISPVLAIGGFPGISVPAGYDPEGVPYGIGFGGLKGFDTDFPIEEATVKDLQLAFYQNKLTSRQLVEFYLKQVRRFNPILKGIIEVNPDALDQASIADNERKRNSLSTLSPLHGIPVLLKDNIATRDKLNTTAGSFALLGSIVPRDAGVVTKLRKAGAIIFGKASLSEWSDFRSYEPPNGWSARGGQGKEKLKEYGQELFLEAEATKGIGDAEKAALARLAKLSKDGFERLMIKNKLDAIAAPGRLISPVLAIGGFPGVSVPAGYNPQGVPCGNGFGGLKGLAIGLLVLFLAAISARSEYYSKTAPRVQLKEKVTNLHFFLFDILSGKKPSAVEVGHSNITIGDQSATRFGSVYAVDDPLREGPDPNSKVIGNARGLYVSASQDADLCLVMYIDYGFTTGKYNGSSISVFSRNPVTESKREVAVVGGRGKFKMARGFAKLKTHYLNATNGDAIIEYNVTVFHY 921
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6817630 6842461 + Lsi10G004700.1 Lsi10g00470 672027

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00470 921 PANTHER AMIDASE 7 235 - -
Lsi10g00470 921 PANTHER C869.01-LIKE PROTEIN, PUTATIVE-RELATED 233 314 - -
Lsi10g00470 921 PANTHER C869.01-LIKE PROTEIN, PUTATIVE-RELATED 316 387 - -
Lsi10g00470 921 PANTHER C869.01-LIKE PROTEIN, PUTATIVE-RELATED 497 647 - -
Lsi10g00470 921 PANTHER C869.01-LIKE PROTEIN, PUTATIVE-RELATED 403 496 - -
Lsi10g00470 921 PANTHER AMIDASE 497 647 - -
Lsi10g00470 921 PANTHER AMIDASE 403 496 - -
Lsi10g00470 921 Coils Coil 60 80 - -
Lsi10g00470 921 Pfam Dirigent-like protein 773 919 IPR004265 -
Lsi10g00470 921 Pfam Amidase 38 235 IPR023631 -
Lsi10g00470 921 Pfam Amidase 523 630 IPR023631 -
Lsi10g00470 921 Pfam Amidase 317 387 IPR023631 -
Lsi10g00470 921 PANTHER AMIDASE 316 387 - -
Lsi10g00470 921 PANTHER AMIDASE 648 741 - -
Lsi10g00470 921 Gene3D Amidase signature (AS) domain 235 314 IPR036928 -
Lsi10g00470 921 Gene3D Amidase signature (AS) domain 497 648 IPR036928 -
Lsi10g00470 921 Gene3D Amidase signature (AS) domain 401 496 IPR036928 -
Lsi10g00470 921 Gene3D Amidase signature (AS) domain 315 387 IPR036928 -
Lsi10g00470 921 Gene3D Amidase signature (AS) domain 649 740 IPR036928 -
Lsi10g00470 921 Gene3D Amidase signature (AS) domain 4 234 IPR036928 -
Lsi10g00470 921 PANTHER AMIDASE 233 314 - -
Lsi10g00470 921 PANTHER C869.01-LIKE PROTEIN, PUTATIVE-RELATED 7 235 - -
Lsi10g00470 921 Gene3D - 759 908 IPR044859 -
Lsi10g00470 921 SUPERFAMILY Amidase signature (AS) enzymes 317 403 IPR036928 -
Lsi10g00470 921 SUPERFAMILY Amidase signature (AS) enzymes 500 644 IPR036928 -
Lsi10g00470 921 PANTHER C869.01-LIKE PROTEIN, PUTATIVE-RELATED 648 741 - -
Lsi10g00470 921 SUPERFAMILY Amidase signature (AS) enzymes 416 496 IPR036928 -
Lsi10g00470 921 SUPERFAMILY Amidase signature (AS) enzymes 15 235 IPR036928 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00470 K01426 E3.5.1.4, amiE; amidase [EC:3.5.1.4] - mnt:21407681 412.92
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi10g00470 Lsi11g01185 CCT
Lsi10g00470 Lsi11g01185 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00470 Lsi-Chr10:6817630 Lsi10g00983 Lsi-Chr10:14202743 1.58E-39 dispersed
Lsi11g01652 Lsi-Chr11:24815943 Lsi10g00470 Lsi-Chr10:6817630 1.73E-10 dispersed
Lsi10g00470 Lsi-Chr10:6817630 Lsi10g00472 Lsi-Chr10:6849176 4.77E-42 proximal
Lsi03g00659 Lsi-Chr3:8327585 Lsi10g00470 Lsi-Chr10:6817630 1.36E-15 transposed
Lsi03g01758 Lsi-Chr3:28992118 Lsi10g00470 Lsi-Chr10:6817630 3.31E-41 transposed
Lsi06g01392 Lsi-Chr6:24492185 Lsi10g00470 Lsi-Chr10:6817630 3.18E-32 transposed
Lsi07g01430 Lsi-Chr7:20838707 Lsi10g00470 Lsi-Chr10:6817630 3.73E-21 transposed
Lsi09g01834 Lsi-Chr9:27164237 Lsi10g00470 Lsi-Chr10:6817630 3.99E-36 transposed
Lsi10g00470 Lsi-Chr10:6817630 Lsi11g01185 Lsi-Chr11:20327281 4.26E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g124 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1219 Cone8ag1272 . . Lsi10g00470 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01185 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013842 0 1 1 1 1 1 0 1 1 1 1 1 0 1 1 0 1 1 0 1 0 1 1 1 2 1 1 1 2 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00470 Lsi_Chr10 FPKM 2.089593 2.211311 7.342527 6.648111 9.197309 6.867915 9.519062 3.823863 3.50491 3.890232