Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00476 ATGGCCGGCATTGTCAAGGAAATCCTGGCAAGGCCCATCCAACTGGCCGACCAGGTAACAAAAAACGCCGATTCCGCCCAATCCTTCAAACAAGAATGCATTGAACTCAAAACCAAAACCGAAAAACTCGCCGCCCTCCTCCGTCAAGCTGCCCGTGCCAGCAACGATCTCTACGAACGCCCCACTCGCCGGATCATCGACGACACCGAGCAAGTCCTCGACAAAGCCCTAACTCTCGTCATCAAATGTCGCGCCAATGGCATTATGAAACGCATGTTCACCATCATCCCAGCCGCCGCTTTCAAGAAAACCTCCACCCAGCTTGAAAATTCCATCGGCGATGTCTCTTGGCTCCTCCGTGTCTCCGCCCCTGCCGAGGATCGCGACGATGAATACCTCGGCCTTCCTCCCATTGCTTCCAATGAACCCATTTTAGGGCTTATTTGGGAACAGGTCGCCATTCTTCACACCGGTGCTTTAGATGAACGATCCGACGCCGCCGCTTCCCTCGCTTCGTTGGCTCGTGACAACGATCGGTACGGGAAATTGATCATTGAAGAAGGCGGCGTTGCGCCATTGCTGAAATTGGCTAAGGAAGGACGATTGGAAGGTCAGGAACACGCCGCTAGAGCGATTGGGCTTCTGGGTCGAGATTCAGAGAGCGTGGAACAGATTGTGAATTGTGGGGTTTGCTCTGTTTTTGCGAAGATTCTGAAAGATGGGCATATGAAGGTTCAATCCGTTGTCGCTTGGGCGGTTTCAGAAATGGCGACTCACCATCCCAAATGTCAAGATCATTTTGCTCAGAACAATGTGATTCGGCTTCTGGTTAGTCATCTTGCCTTTGAAACCATCCAAGAACATAGTAGGTACGCCATTGCTACTAAACATCAAATGTCGATTCATTCTGTGCTGATGGCTAATAATAATAGTTCTGATCAAAATGTGAAAAATGGGTATGAAGAGGAAGATCATAAACAAACGAGTAATAGTATGAATCACCCAACTGGGAATCAATTGCCTAGCCAAATGCATAATGTAGTTACCAACACAATGGCTATGAAGAATCCTATACAGGGTCAATCCAATACACAGGAAGTTCATAAGGCTACTCATCACCTTCACACCAATACTGGGCGAGTTGCATTATCAGGGGCTAGCATAAAAGGAAGGGAATATGAGGATCCAGCCACTAAGGTCCAAATGAAAGCCATGGCTGCTAGAGCTTTATGGCATTTATGCAAAGGGAATGTTACCATTTGCCGCAACATTACAGAGTCAAGAGCTCTTTTGTGCTTTGCAGTTCTATTAGAAAAGGGTCCTGAGGATGTCAAGTACTATTCAGCCATGGCATTGATGGAAATCACCGCCGTTGCTGAGCAGAATGCCGAGCTACGTCGAACTGGATTCAAGCCCACCTCCCCCGCCGCCAAGGCTGTCGTGGAACAGTTATTGAAAATCATCGAGAAGGCAAATTGTGATCTGCTTTTACCTTCAATTCAAGCCATTGGTCACTTGGCTAGGACGTTTAGAGCAACCGAAACAAGGATAATCGGACCACTCGTAAAGCTGCTGGATGAAAGGGAGGCAGAGGTTTCAATGGAGGCTGTGATTGCACTTAACAAATTTGCTTGTACAGACAATTTCTTACATGAAAACCATTGCAAAGCCGTGATTGAAGCAGGAGGAACTAAGCACTTAATCCAATTAGTGTATTTTGGTGAACAGATGGTTCAAATTCCTTCATTGATTCTGCTTTGTTACATAGCTTTACATGTTCCTGATAGTGAGACTCTAGCTCAAGAAGAAGTACTTATAGTGCTGGAATGGTCTTCTAAACAGGCGCATTTAGTGGAAGAACCCACCATTGAAAGTCTATTGCCAGAAGCCAAAAGTAGGTTGGAACTTTATCAGTCCAGAGGTTCAAGAGGATTTCATTGA 1941 46.47 MAGIVKEILARPIQLADQVTKNADSAQSFKQECIELKTKTEKLAALLRQAARASNDLYERPTRRIIDDTEQVLDKALTLVIKCRANGIMKRMFTIIPAAAFKKTSTQLENSIGDVSWLLRVSAPAEDRDDEYLGLPPIASNEPILGLIWEQVAILHTGALDERSDAAASLASLARDNDRYGKLIIEEGGVAPLLKLAKEGRLEGQEHAARAIGLLGRDSESVEQIVNCGVCSVFAKILKDGHMKVQSVVAWAVSEMATHHPKCQDHFAQNNVIRLLVSHLAFETIQEHSRYAIATKHQMSIHSVLMANNNSSDQNVKNGYEEEDHKQTSNSMNHPTGNQLPSQMHNVVTNTMAMKNPIQGQSNTQEVHKATHHLHTNTGRVALSGASIKGREYEDPATKVQMKAMAARALWHLCKGNVTICRNITESRALLCFAVLLEKGPEDVKYYSAMALMEITAVAEQNAELRRTGFKPTSPAAKAVVEQLLKIIEKANCDLLLPSIQAIGHLARTFRATETRIIGPLVKLLDEREAEVSMEAVIALNKFACTDNFLHENHCKAVIEAGGTKHLIQLVYFGEQMVQIPSLILLCYIALHVPDSETLAQEEVLIVLEWSSKQAHLVEEPTIESLLPEAKSRLELYQSRGSRGFH 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6882761 6884701 + Lsi10G004760.1 Lsi10g00476 672033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00476 646 Gene3D - 386 628 IPR011989 -
Lsi10g00476 646 PANTHER ARMADILLO REPEAT ONLY 4 1 646 - -
Lsi10g00476 646 Gene3D - 4 121 IPR036537 GO:0007166
Lsi10g00476 646 SUPERFAMILY ARM repeat 153 605 IPR016024 -
Lsi10g00476 646 PANTHER ARMADILLO REPEAT ONLY 1 1 646 - -
Lsi10g00476 646 MobiDBLite consensus disorder prediction 309 339 - -
Lsi10g00476 646 SMART arm_5 218 258 IPR000225 GO:0005515
Lsi10g00476 646 SMART arm_5 551 591 IPR000225 GO:0005515
Lsi10g00476 646 SMART arm_5 473 508 IPR000225 GO:0005515
Lsi10g00476 646 SMART arm_5 176 217 IPR000225 GO:0005515
Lsi10g00476 646 SMART arm_5 417 457 IPR000225 GO:0005515
Lsi10g00476 646 Coils Coil 36 56 - -
Lsi10g00476 646 Pfam Armadillo/beta-catenin-like repeat 219 257 IPR000225 GO:0005515
Lsi10g00476 646 Gene3D - 150 334 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00476 - - - csv:101216019 1201.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00406 Lsi-Chr2:3429591 Lsi10g00476 Lsi-Chr10:6882761 1.37E-108 transposed
Lsi08g01647 Lsi-Chr8:24322527 Lsi10g00476 Lsi-Chr10:6882761 3.99E-114 transposed
Lsi01g00597 Lsi-Chr1:4765863 Lsi10g00476 Lsi-Chr10:6882761 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g134 . . . . . . . . . . Cma02g00321 . Car02g00202 Car20g00666 . . . . . . . . . . . . . . . . . . . . . Lsi10g00476 . Chy11g00278 . . . . . . . . . Sed01g0209 Cmo02g00315 . . . . . Cpe16g00305 Cpe05g01320 Bhi10g01872 Tan05g1164 Cmetu11g2261 . Hepe08g0276 . . Cla02g01149 Cam02g1226 Cec02g1233 Cco02g1275 Clacu02g1206 Cmu02g1175 Cre02g1484 . Csa02g01370 . Cme11g00398
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008024 0 1 2 1 2 1 3 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00476 Lsi_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0