Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00478 ATGGATCGTCCACTCCTTCTCGTCTCTGTTTTCACTCTTCTCCTTCTCCCAGATGTTCAATCGACGTCTTTTAAGTTAGTCAACAAGTGTCGGACCACGATTTGGCCTGGTTTGTTATCCGGCGCCGGCACTGCCCAGCTTCCGACCACCGGCTTCGCTCTCCGCAGCGGCAAATCCAAGATCGTTCCGCTCCCTAAATCTTGGTCGGGTCGGTTATGGGGTCGGACCCTTTGTGGGTTAGATTCCGATGGGAAATTCTCTTGCTTAACCGGCGACTGTGGGTCGGGTAAAGTGGAGTGTATTGGCGGCGGCGCTAAGCCGCCGGCCACCTTGGCGGAGTTTACTCTCAACGGCGCCGATGGGCTTGATTTTTATGACGTCAGCTTGGTCGACGGTTACAATCTTCCGATGCTGATTGTGGCTAAAGGTGGGACGAGAGGCGGTTGCGCCGCCACCGGCTGTTTGGTGGATTTGAACGGCGCGTGTCCGTCAGAGCTCAGAGTAGCGCGTGGTAATGGTGGTGGTGGAAGGAGCGTGGCTTGTAGAAGCGCGTGTGAGGCTTTTAATGCTCCGCAATTTTGTTGTAGTGAGGCGTTCTCTACGCCTGACACGTGTCGACCTTCGTCAGAAAGTGTTGAGTGCAAGGAAAGACGGGGCAGCGCTACCGCTCGTGAACAAGACGATGATGTATCTGAGAAGCCGAAGAGCGAGCGGCGTTCTATCTGCAGGTTTAATCAAATACTAATAGCCTATAAGATCAAATCAACCAAAACTATGGCTGCCTCTTCTGGCCAACTTTTGCAGCCTCCCTCTGTTACTGACATTGGCCTTCCCTGTAATTTTCAGGCAGATAGTTTCGATATGAACAGCCGATGTCGACGAAGAGACGTTGTGTATCGACATCAATGA 909 52.7 MDRPLLLVSVFTLLLLPDVQSTSFKLVNKCRTTIWPGLLSGAGTAQLPTTGFALRSGKSKIVPLPKSWSGRLWGRTLCGLDSDGKFSCLTGDCGSGKVECIGGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNLPMLIVAKGGTRGGCAATGCLVDLNGACPSELRVARGNGGGGRSVACRSACEAFNAPQFCCSEAFSTPDTCRPSSESVECKERRGSATAREQDDDVSEKPKSERRSICRFNQILIAYKIKSTKTMAASSGQLLQPPSVTDIGLPCNFQADSFDMNSRCRRRDVVYRHQ 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6914624 6916965 + Lsi10G004780.1 Lsi10g00478 672035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00478 302 ProSitePatterns Thaumatin family signature. 84 100 IPR017949 -
Lsi10g00478 302 PRINTS Pathogenesis-related protein signature 23 35 IPR001938 -
Lsi10g00478 302 PRINTS Pathogenesis-related protein signature 123 139 IPR001938 -
Lsi10g00478 302 PRINTS Pathogenesis-related protein signature 71 82 IPR001938 -
Lsi10g00478 302 Pfam Thaumatin family 28 231 IPR001938 -
Lsi10g00478 302 SMART tha2 24 243 IPR001938 -
Lsi10g00478 302 CDD TLP-PA 23 211 - -
Lsi10g00478 302 MobiDBLite consensus disorder prediction 216 237 - -
Lsi10g00478 302 Gene3D Thaumatin 22 240 IPR037176 -
Lsi10g00478 302 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 6 231 - -
Lsi10g00478 302 PANTHER OS03G0233200 PROTEIN 6 231 IPR001938 -
Lsi10g00478 302 SUPERFAMILY Osmotin, thaumatin-like protein 22 231 IPR037176 -
Lsi10g00478 302 ProSiteProfiles Thaumatin family profile. 21 231 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00478 - - - csv:101216503 391.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00478 Lsi-Chr10:6914624 Lsi07g01100 Lsi-Chr7:16405759 6.34E-87 dispersed
Lsi10g00478 Lsi-Chr10:6914624 Lsi10g00480 Lsi-Chr10:6929595 6.32E-71 proximal
Lsi01g00594 Lsi-Chr1:4740368 Lsi10g00478 Lsi-Chr10:6914624 7.97E-73 wgd
Lsi10g00478 Lsi-Chr10:6914624 Lsi04g01754 Lsi-Chr4:24798564 3.20E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g138 Blo02g00698 . Bda06g00483 . . . . . . . . Cma20g00764 . Car20g00665 . . . . . . . . . . . . . . . . . . . . Cone10ag1178 Lsi10g00478 . Chy11g00276 . . . . . . . . . Sed05g3598 . Cmo20g00761 . . . . Cpe16g00306 . Bhi10g01870 Tan05g1162 Cmetu11g0544 . . . . Cla02g01152 Cam02g1228 Cec02g1236 Cco02g1277 Clacu02g1209 Cmu02g1178 Cre02g1487 . Csa02g01372 . Cme11g00396
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000237 1 5 5 5 5 4 5 5 5 8 4 5 7 6 6 6 5 6 5 5 5 6 4 5 5 5 5 11 8 3 160
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00478 Lsi_Chr10 FPKM 84.531319 90.58506 158.344986 167.310867 194.182999 208.164276 187.366745 22.734167 22.548233 20.528231