Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00480 ATGGCTTCTTCTGTCCACCGTTTCATCTCTCTCATTTTCGCATTCCTTCACTTACTCCCCACTTCCAGCGCCGCCACATTCACCTTCGTCAACAGGTGTGATTTCACCGTCTGGCCCGGCATTCTCGCCAATGCCGGCAACCCCACTCTCGGCACCACCGGGTTCGAACTCCCCAAGGACACTTCCCGTTCTTTCCTTGCCCCCACTGGCTGGTCCGGCCGTTTCTGGGGTCGAACCTCCTGTAACTTCGACGGATCCGCTTCTGGATCCTGCCTCACCGGTGACTGCGGCTCTGGACAAGTCGAATGCAATGGCGCCGGAGCTGCCCCGCCTGCCACTCTTGCAGAGTTCACTCTCGGAACTGGCGGGATGGATTTTTACGACGTCAGTCTCGTTGATGGCTATAATCTACCCATGATCGTTGAAGGAACTGGTGGGTCCGGTCAGTGCGCTTCCACGGGTTGCTCAACGGATCTGAACCGTCAATGTCCGCCGGAGCTGAGGGTCGGCGAAGGAGATGCGTGCAAGAGCGCGTGTGAAGCGTTTGGGACTGCTGAGTACTGTTGCAGCGGCGCGTACGGTTCACCCAACTCTTGTAAACCGTCGGTGTACTCAGAAATGTTCAAATCTGCTTGTCCTAAATCCTACAGCTACGCTTACGATGATGCTACGAGTACATTCACTTGTTCCGGCGCCGATTACACCATTACATTTTGCCCTTCTTCTCCAAGCCAAAAATCATCAAGTTTTCCTACTCCAACAACACCAGATACATCTCAAAGTTACGGATCTGAATCCGGGATAGGGTCGGAGTCGGGATCAGAGTATGGGATGGGGTATTCAGGAGCCTCTGGAACTGATATGTTAGGGAGAAGTGCGAGTTCAGGATCGGAGTCGGGGTCAGGGTCGGGATCTGGGGAAGCTATGCTAGCAGATGGGTCATGCACCTCTCTCCAATTTCCTCTCAACTTATGGATTCAGCTTTGTAATGTGAAATTGAGCAAGGAATTTGCAGTTGGTAGGAAAGAAGGAAAGGATCTTCCCTTAGATTGTAAAATGCCATCTTCTTGA 1071 52.66 MASSVHRFISLIFAFLHLLPTSSAATFTFVNRCDFTVWPGILANAGNPTLGTTGFELPKDTSRSFLAPTGWSGRFWGRTSCNFDGSASGSCLTGDCGSGQVECNGAGAAPPATLAEFTLGTGGMDFYDVSLVDGYNLPMIVEGTGGSGQCASTGCSTDLNRQCPPELRVGEGDACKSACEAFGTAEYCCSGAYGSPNSCKPSVYSEMFKSACPKSYSYAYDDATSTFTCSGADYTITFCPSSPSQKSSSFPTPTTPDTSQSYGSESGIGSESGSEYGMGYSGASGTDMLGRSASSGSESGSGSGSGEAMLADGSCTSLQFPLNLWIQLCNVKLSKEFAVGRKEGKDLPLDCKMPSS 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6929595 6931522 + Lsi10G004800.1 Lsi10g00480 672037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00480 356 MobiDBLite consensus disorder prediction 243 275 - -
Lsi10g00480 356 PANTHER OS03G0233200 PROTEIN 11 266 IPR001938 -
Lsi10g00480 356 SUPERFAMILY Osmotin, thaumatin-like protein 25 241 IPR037176 -
Lsi10g00480 356 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Lsi10g00480 356 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Lsi10g00480 356 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Lsi10g00480 356 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Lsi10g00480 356 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Lsi10g00480 356 CDD TLP-PA 26 239 - -
Lsi10g00480 356 MobiDBLite consensus disorder prediction 243 271 - -
Lsi10g00480 356 MobiDBLite consensus disorder prediction 287 308 - -
Lsi10g00480 356 Gene3D Thaumatin 25 240 IPR037176 -
Lsi10g00480 356 ProSiteProfiles Thaumatin family profile. 24 240 IPR001938 -
Lsi10g00480 356 SMART tha2 27 240 IPR001938 -
Lsi10g00480 356 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 11 266 - -
Lsi10g00480 356 Pfam Thaumatin family 31 240 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00480 - - - csv:101216255 536.569
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00594 Lsi-Chr1:4740368 Lsi10g00480 Lsi-Chr10:6929595 2.74E-128 dispersed
Lsi07g01099 Lsi-Chr7:16390594 Lsi10g00480 Lsi-Chr10:6929595 1.85E-124 dispersed
Lsi08g01311 Lsi-Chr8:21466639 Lsi10g00480 Lsi-Chr10:6929595 1.45E-112 dispersed
Lsi08g01312 Lsi-Chr8:21484746 Lsi10g00480 Lsi-Chr10:6929595 2.22E-100 dispersed
Lsi08g01419 Lsi-Chr8:22439427 Lsi10g00480 Lsi-Chr10:6929595 1.89E-81 dispersed
Lsi10g00478 Lsi-Chr10:6914624 Lsi10g00480 Lsi-Chr10:6929595 6.32E-71 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g139 . Blo15g00372 . . . . . . . . . Cma20g00763 . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00480 . Chy11g00274 . . . . . . . . . Sed05g3597 . Cmo20g00760 . . . . Cpe16g00307 . Bhi10g01869 Tan05g1161 . . Hepe08g0278 . . Cla02g01153 Cam02g1229 Cec02g1238 Cco02g1278 Clacu02g1210 Cmu02g1179 Cre02g1488 . Csa02g01374 . Cme11g00395
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000476 2 3 3 3 2 4 4 4 4 5 4 4 6 4 4 5 4 4 4 4 4 4 4 4 4 4 3 5 4 3 116
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00480 Lsi_Chr10 FPKM 58.661179 62.241871 27.449755 28.176212 14.223176 14.68868 12.670785 45.962532 49.116859 42.815937