Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00482 ATGGGTTCTATGAAGCTGCCGCCATCGACGACGGTGCTGAAATGGCTGGGGTTTGTCTCCGCCGTGTGGGTTCAGGCAATTTCCGGCAACAACTACACGTTTTCGAACTATTCCGACGCTCTGAAATCTCTGATGAATCTAACCCAACTTCAGCTGAATAATCTGTCCGTGGCTAAAGACGTCGGAAAAGCGTTCGGACTTCTGGCCGGAATCGCGTGTGATTGGTTTCCAACTTGGGTGATTTTGCTTATCGGATCTCTTGAAGGTCTTATCGGCTATGGCGCTCAGTGGCTTGTTGTTAGCCAGAGGATTTCTCCTCTTCCTTATTGGCAGATGTGCATCTTCTTGTGTTTGGGAGGAAACAGCACGACATGGATGAACACGGCGGTGCTAGTAACCTGCATCAGAAACTTCCGGAAGAATCGCGGCCCAGTTTCCGGCATTCTCAAAGGCTACGTCGGCCTCAGCACTGCCATTTTCACCGATCTCTGTTTTGCTCTGTTTTCCTCCGACCCATCTTCCTTCCTCCTCCTGCTCGTCTTTGTCCCCTTCGCCGTCTGTCTCTTCGCCATGTTCTTCCTCCGCGAAATCCCACCTTCAACCACCGCCGCCGATACCCAACAAGAGTCCAATTACTTCTCCGTCTTCAACGCTCTCGCCGTCATCGTCGCCGTCTATCTCTTATGCTTCGATTTCATCAAAAACTCCGGCAGACTCGTTTCCCAATTATTTTCCATCGGGCTACTGATTCTCCTCGGATCCCCTTTGGTAATTCCGATTTACACGTTTTTCAAGAGCTGGCACTCGAATCAAGACCGATCTGATATGGAGGCCCGAATTGAGGAGCCGCTACTGAAAGAAGAGGCAGTTGCGGCGCCGGTAAAGGAGGAAGCAGAGGAAATTGCAGAGGAAGAACAGAGAGCGCCGGTTATCGGAGAAGAACACACGATTTTTGAAGCGGTGAAAACAATTGATTTCTGGGTGTTGTTCGTGTCGTTTCTGTGTGGAGTTGGAACGGGATTGGCGGTGATGAACAATATGGGTCAGATCGGATTGGCTCTGGGCTACGCCGATGTTTCCATGTTCGTTTCTCTCACAAGTATTTGGGGATTTTTCGGCCGGATTCTTTCCGGTACACTTTCCGAGCATTTTCTCAAAAAAGCAGGCACACCAAGGCCTCTATGGAACGCTGCATCTCAAATTCTAATGACCGTTGGATACATTTTAATGGCCATGGCAATGCCGGGTTCTCTCTACATCGGCTCGGTCATCGTCGGGATCTGCTACGGCGTTCGTCTCTCCGTCACCGTCCCCACCGCATCTGAGCTCTTCGGTCTCAAATACTACGGTCTCATCTACAACATTCTCATCCTCAACCTCCCGATCGGCTCCTTCCTCTTCTCCGGCCTCCTCGCAGGGTTTCTCTACGACATGGAGGCAACCCCGACCGAGGGCGGCGGGAACACATGCATCGGAGGGCATTGCTATAGAATTGTGTTTCTTGTGATGGCATTGGCTTGTGTAATTGGCTTTGTTTTGGACATTTGGTTGGCGTTTAGAACCAAAGAGCTTTATTCTAAGCTTAAAGCCAACAAGAAATCAAAGAAGGGAAACAACAACAATTCCTAG 1629 50.09 MGSMKLPPSTTVLKWLGFVSAVWVQAISGNNYTFSNYSDALKSLMNLTQLQLNNLSVAKDVGKAFGLLAGIACDWFPTWVILLIGSLEGLIGYGAQWLVVSQRISPLPYWQMCIFLCLGGNSTTWMNTAVLVTCIRNFRKNRGPVSGILKGYVGLSTAIFTDLCFALFSSDPSSFLLLLVFVPFAVCLFAMFFLREIPPSTTAADTQQESNYFSVFNALAVIVAVYLLCFDFIKNSGRLVSQLFSIGLLILLGSPLVIPIYTFFKSWHSNQDRSDMEARIEEPLLKEEAVAAPVKEEAEEIAEEEQRAPVIGEEHTIFEAVKTIDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYADVSMFVSLTSIWGFFGRILSGTLSEHFLKKAGTPRPLWNAASQILMTVGYILMAMAMPGSLYIGSVIVGICYGVRLSVTVPTASELFGLKYYGLIYNILILNLPIGSFLFSGLLAGFLYDMEATPTEGGGNTCIGGHCYRIVFLVMALACVIGFVLDIWLAFRTKELYSKLKANKKSKKGNNNNS 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6946048 6951034 - Lsi10G004820.1 Lsi10g00482 672039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00482 542 Pfam Nodulin-like 14 260 IPR010658 -
Lsi10g00482 542 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 9 537 - -
Lsi10g00482 542 Gene3D MFS general substrate transporter like domains 319 528 IPR036259 -
Lsi10g00482 542 Gene3D MFS general substrate transporter like domains 10 212 IPR036259 -
Lsi10g00482 542 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE 9 537 - -
Lsi10g00482 542 SUPERFAMILY MFS general substrate transporter 14 522 IPR036259 -
Lsi10g00482 542 CDD MFS_Mch1p_like 13 510 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi10g00482 Lsi11g01194 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00482 Lsi-Chr10:6946048 Lsi03g00141 Lsi-Chr3:2026021 1.41E-102 dispersed
Lsi02g01224 Lsi-Chr2:16037077 Lsi10g00482 Lsi-Chr10:6946048 5.33E-51 transposed
Lsi03g00402 Lsi-Chr3:4595550 Lsi10g00482 Lsi-Chr10:6946048 2.51E-94 transposed
Lsi07g00429 Lsi-Chr7:4591177 Lsi10g00482 Lsi-Chr10:6946048 4.26E-112 transposed
Lsi07g00763 Lsi-Chr7:8305771 Lsi10g00482 Lsi-Chr10:6946048 1.19E-82 transposed
Lsi09g01880 Lsi-Chr9:27607407 Lsi10g00482 Lsi-Chr10:6946048 1.78E-79 transposed
Lsi10g00482 Lsi-Chr10:6946048 Lsi11g01194 Lsi-Chr11:20389453 4.52E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00482 - - csv:101216743 869.381