Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00483 ATGCCTCCTCCTCTTGATCGTCTTTCTTGTTTTCCTCGTTTTGGTGCTGTTTACTCACAATCAAGTATGTCTTCGTCCCTTTTGAGGATTCGTATTCCTGATTCTCTTCCGGATCTGATTGCCAATAATTTGACTGTAAATGGTAGCTTTAGTTATACTTATATTCGTGTCCAATATGTAATTAGGCAAGAGAAACTAGAAGAAGAGGCTGAAATTACCCACAGGGTTTACTTGGATGTTGATATTGATGAACAGAGATTAGGTAGAATCGTGATTGGATTATATGGCCAGGTTGTACCCAAAACTGTAGAAAATTTTAGGGCTCTATGCACAGGGGAGAAAGGTAAAACTACAAGTGGAAAAGCACTCCACTATAAAGGAACACCGTTCCATCGTATTATATCTGGTTTCATGATTCAAGGTGGTGATATTTTATACGGTGACGGAAAAGGATATGAATCAATCTATGGTGGTACATTTGCTGATGAGAACTTCAAAATAAAACATTCACATGCAGGCGTTGTCTCCATGGTAAACTCAGGACCTGATTCAAATGGCTCACAATTTTTCATTACCACCATTAAGTCCAGCTGGTTAGATGGAGAGCACGTTGTCTTTGGCAAGGTTATCCAAGGAATGGACTATGTATATGCAATTGAGGGCGGAGCAGGAACCTATAGCGGGAAACCTAGAAAGAAGGTTACCATTGCTGAGAGTGGGGAGATACCCAAGAGCAAGTGGGATGAGGAAACGTGA 756 40.74 MPPPLDRLSCFPRFGAVYSQSSMSSSLLRIRIPDSLPDLIANNLTVNGSFSYTYIRVQYVIRQEKLEEEAEITHRVYLDVDIDEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGKTTSGKALHYKGTPFHRIISGFMIQGGDILYGDGKGYESIYGGTFADENFKIKHSHAGVVSMVNSGPDSNGSQFFITTIKSSWLDGEHVVFGKVIQGMDYVYAIEGGAGTYSGKPRKKVTIAESGEIPKSKWDEET 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6977132 6981440 + Lsi10G004830.1 Lsi10g00483 672040

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00483 251 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 80 239 IPR002130 GO:0000413|GO:0003755
Lsi10g00483 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 188 IPR002130 GO:0000413|GO:0003755
Lsi10g00483 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 188 200 IPR002130 GO:0000413|GO:0003755
Lsi10g00483 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 130 142 IPR002130 GO:0000413|GO:0003755
Lsi10g00483 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 94 109 IPR002130 GO:0000413|GO:0003755
Lsi10g00483 251 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 201 216 IPR002130 GO:0000413|GO:0003755
Lsi10g00483 251 Gene3D - 61 248 IPR029000 -
Lsi10g00483 251 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 125 142 IPR020892 GO:0003755|GO:0006457
Lsi10g00483 251 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 45 251 - -
Lsi10g00483 251 SUPERFAMILY Cyclophilin-like 71 242 IPR029000 -
Lsi10g00483 251 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 45 251 - -
Lsi10g00483 251 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 77 241 IPR002130 GO:0000413|GO:0003755
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00483 - - - csv:101216978 369.777
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00483 Lsi-Chr10:6977132 Lsi10g01435 Lsi-Chr10:18439411 4.49E-82 dispersed
Lsi10g00483 Lsi-Chr10:6977132 Lsi11g01025 Lsi-Chr11:17432350 3.87E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g142 . Blo15g00374 Bda06g00481 . Bpe07g00720 . Bma05g00416 Bma12g00927 . . Cma02g00244 . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00483 . Chy11g00269 . . . . . . . . . Sed01g0205 Cmo02g00246 . . . . . . Cpe05g01381 Bhi10g01864 Tan05g1156 Cmetu11g0137 . Hepe08g0282 . . Cla02g01156 Cam02g1232 Cec02g1241 Cco02g1281 Clacu02g1213 Cmu02g1182 Cre02g1491 . Csa02g01379 . Cme11g00391
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012364 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00483 Lsi_Chr10 FPKM 4.053965 3.960001 5.166233 5.535542 7.210161 7.869674 6.821636 5.72366 5.562381 4.910313