Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00486 ATGGTCTGGCAGTCTCAAAAAAAGATGAATGTCAAAGGTTGCAGTGGATTAAGAAATCAGGTCTTGGAGAACAGGGTAGTACTGATGCAAAACCTTGTACATGATAAAGAATTTGAGGAGCTACGGTGTAGGAACCTACCACGACCACCATCCGTGGTGGCGGCCTATTCTCGTTCTCTTCCCCGCTTGGGAAGGTGGATCAAAGAAAGTAGCTTGCTTCTCACCGGGACAGGTGGCAGCTTATCTAGTGGTCAACCTTCCTACCAGGATGTCTCCTTGGTCAAAGAGCCCCATTATTACTACCAGAATGCATTTGGCCCCTCTGCTGGCACTATATGTTTATCTGGATTATTAATTCTCGTGGTGCGTTTTGTTCGTGCTGTGGTCGATAGTGCAAGACAAGAAGATATTCCTGGAATGTTCAACCTTGTTTTACGTTGCTGTGTAAATACATTTCTGGCAGCTGTTGATTATCTGAACAAATTTGCAATAACTTTTGCAGCAATAACAGGTGAAGCTTACTGCTCATCTGCAAGAATGACATATGAACTTTTGAAACGCAATCTCCTCTCAACTGTTTTCGTGGAGACCATCTCCACGCGTTTGTTAGCTGGCATCGCCTTTGTCCTCTCAGCCATATATGCAATTGTGGCTTGTGCTATCTTACAGGCTGTGAGCCATCTTGGGGTATATACATACCTCATTGCTGTTGCAGCATGGCTGCTTCTGACCGTAGTACTCGGATTCTTTATCCACGTACTGGATAATGTAATCGAAACCGTGTACGTATGCTATGCTATTGACAGGGATAGAGGTGAAGTGTGCAAACAAGATGTCCATGAAGTTTATGTTCACCTACCCATTAGCAGGAATCACAGATCATCTCTGGTAACTACACTCCTTGTATAA 909 44.11 MVWQSQKKMNVKGCSGLRNQVLENRVVLMQNLVHDKEFEELRCRNLPRPPSVVAAYSRSLPRLGRWIKESSLLLTGTGGSLSSGQPSYQDVSLVKEPHYYYQNAFGPSAGTICLSGLLILVVRFVRAVVDSARQEDIPGMFNLVLRCCVNTFLAAVDYLNKFAITFAAITGEAYCSSARMTYELLKRNLLSTVFVETISTRLLAGIAFVLSAIYAIVACAILQAVSHLGVYTYLIAVAAWLLLTVVLGFFIHVLDNVIETVYVCYAIDRDRGEVCKQDVHEVYVHLPISRNHRSSLVTTLLV 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6990704 6995486 + Lsi10G004860.1 Lsi10g00486 672043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00486 302 Pfam Plasma-membrane choline transporter 102 270 IPR007603 GO:0022857|GO:0055085
Lsi10g00486 302 PANTHER CTL-LIKE PROTEIN DDB_G0288717 101 284 - -
Lsi10g00486 302 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 101 284 IPR007603 GO:0022857|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00486 - - - bhj:120088409 372.089
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00279 Lsi-Chr4:2805241 Lsi10g00486 Lsi-Chr10:6990704 1.08E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g143 . Blo15g00375 Bda06g00480 . Bpe07g00719 . . Bma12g00926 . . Cma02g00245 Cma20g00759 . Car20g00660 . . . . . . . . . . . . . . . . . . . . . Lsi10g00486 . Chy11g00265 . . . . . . . . . Sed05g3603 . Cmo20g00755 . . . . Cpe16g00311 Cpe05g01380 Bhi10g01862 Tan05g1154 Cmetu11g2104 . Hepe08g0284 . . Cla02g01158 Cam02g1234 Cec02g1243 Cco02g1283 Clacu02g1215 Cmu02g1184 Cre02g1495 . Csa02g01381 . Cme11g00389
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005973 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 2 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00486 Lsi_Chr10 FPKM 1.447785 2.02227 3.050732 2.586015 6.867574 7.011315 7.949919 3.043484 3.894224 4.161089