Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00488 ATGGCCGCTTTTCTCTCCATTTCTCTTTCCCCTTTCTTCTTCCTTCTTCTCTTAATCCTTATCTCTACAGTTTCAGCCGATTCTCCATTGAAGACCTTCATCTTCCGTGTCGACCGTTTCTCTAAGCCCTCTGTTTTTCCTACCCATTACCACTGGTACACTTCCGAGTTCGCCGAATCCCCCAAAATCCTCCATGTTTACGACACCGTCTTCCATGGATTCTCTGCAACTTTAACTCAAGACCAAGTCGATACCATCGGAAAACACCCTTCTGTGCTCGCTGTTTTCGAGGACCGTCGTCGTCAGCTTCACACCACCCGTTCCCCTCAATTTCTCGGCCTTCGAAACCAGCGTGGTCTATGGTCTGATTCCGATTACGGCTCCGATGTAATCATTGGAGTTTTCGATACTGGGATTTCCCCTGAACGACGAAGCTTCTCCGATGTGAATTTGGGGCCGATTCCTCGCCGGTGGAAGGGGGTTTGTGAGACTGGAACTAAGTTCACGGCCAAAAACTGTAACAGGAAGATCGTGGGTGCGAGGTTTTTCTCTAAGGGTCACGAAGCAGGGTCCAACGCTGCCGGTCCCATTATTGGGATAAACGACACGATTGAGTACAGATCTCCGAGAGACGCTGATGGCCATGGGACTCATACGGCGTCGACGGCGGCCGGACGGCACGCGTTTCAGGCTAGTTTGGAGGGTTATGCTTCTGGAATAGCAAAGGGTGTGGCCCCTAAGGCGCGTTTGGCGGTTTACAAGGTTTGTTGGAAAAACTCGGGTTGTTTTGATTCCGATATTCTCGCGGCATTTGATGTTGCGGTTAACGACGGCGTCGATGTCATTTCGATCTCAATTGGAGGCGGCGATGGCGTTTCCTCACCGTATTATCTTGACCCAATTGCAATCGGAGCGTACGGCGCCGCTTCCAGGGGTGTTTTCGTTTCGTCTTCGGCTGGGAACGATGGACCCAATGGAATGTCAGTGACGAACTTGGCCCCGTGGGTTACGACGGTTGGAGCAGGTACGATTGACCGGAATTTCCCGGCGGTGGTAACTCTGGGAAACGGACGGAAGATTTCCGGGGTATCTCTCTACGCTGGAGCGCCGTTGAACGGTACAATGTATCCATTAGTTTACCCTGGAAAATCAGGGGTGCTCTCTGTTTCGCTCTGTATGGAAAATTCACTCGACCCTAAGGCTGTGGCCGGAAAAATTGTGATCTGCGACAGGGGAAGTAGTCCCAGAGTGGCTAAGGGTTTGGTCGTGAAGAAGGCCGGCGGCGTCGGAATGATTCTAGCAAACGGAATCTCAAACGGCGAAGGACTCGTCGGCGATGCCCATCTTCTTCCCGCCTGCGCAGTCGGCTCCGACGAAGGCGATGCCATGAAAGCCTACGCATCGTCCTCTCCAAATCCCACCGCCACCATCGCCTTCCAAGGCACTATAATCGGAATCAAACCGGCGCCAGTTGTGGCTTCGTTTTCCGCAAGAGGGCCAAACGGACTAAACCCAGAAATTCTAAAACCAGACTTAATCGCACCAGGGGTTAACATTCTTGCCGCCTGGACCGACGCCGTCGGTCCAACCGGTTTGGACTTCGATACACGAAAAACAGAGTTCAACATCTTGTCCGGTACATCAATGGCGTGTCCCCATGTAAGTGGAGCCGCTGCTCTATTGAAATCAGCTCACCCAGATTGGAGTCCAGCAGCGTTAAGATCCGCCATGATGACCACCGCAAGTATCACCGACAACCGCCGGCAACCAATGACGGAAGAATCCACCGGAAAAGCTTCTACCCCTTACGATTTCGGTGCCGGACATGTAAATTTGGGGCTTGCAATGGACCCAGGTCTAGTTTACGACATTACAAACACCGATTACATAAACTTCTTATGCTCAATCGGGTACGGACCGAAGATGATTCAGGTAATAACAAGAACACCGGTGACATGTCCAGCGAAAAAACCATTACCGGAAAATCTCAATTACCCATCAATCGTAGCAGTATTTTCAAGTCTATCAAAAGGGTGGTCGACAAAGTCGTTTATCCGAACAGCGACGAACGTGGGTCCAGCAAATTCAGTGTACAGAGCCAAAATCGAAGCTCCAAAAGGGGTTACAGTGAAGGTAAAACCATCAAAACTGGTATTCTCAGCAACGGTGAAGAAACAGAGCTTCGTAGTGGCAATATCAGCCGACAATCAGAATCTGGCACTGGGCGATGTGGGCGCTGTTTTTGGTTGGCTTTCTTGGTCTGATGGAAAACATGTGGTCCGTAGCCCACTGGTAGTGACTCAATTAGAGCCTTTGTAA 2319 50.88 MAAFLSISLSPFFFLLLLILISTVSADSPLKTFIFRVDRFSKPSVFPTHYHWYTSEFAESPKILHVYDTVFHGFSATLTQDQVDTIGKHPSVLAVFEDRRRQLHTTRSPQFLGLRNQRGLWSDSDYGSDVIIGVFDTGISPERRSFSDVNLGPIPRRWKGVCETGTKFTAKNCNRKIVGARFFSKGHEAGSNAAGPIIGINDTIEYRSPRDADGHGTHTASTAAGRHAFQASLEGYASGIAKGVAPKARLAVYKVCWKNSGCFDSDILAAFDVAVNDGVDVISISIGGGDGVSSPYYLDPIAIGAYGAASRGVFVSSSAGNDGPNGMSVTNLAPWVTTVGAGTIDRNFPAVVTLGNGRKISGVSLYAGAPLNGTMYPLVYPGKSGVLSVSLCMENSLDPKAVAGKIVICDRGSSPRVAKGLVVKKAGGVGMILANGISNGEGLVGDAHLLPACAVGSDEGDAMKAYASSSPNPTATIAFQGTIIGIKPAPVVASFSARGPNGLNPEILKPDLIAPGVNILAAWTDAVGPTGLDFDTRKTEFNILSGTSMACPHVSGAAALLKSAHPDWSPAALRSAMMTTASITDNRRQPMTEESTGKASTPYDFGAGHVNLGLAMDPGLVYDITNTDYINFLCSIGYGPKMIQVITRTPVTCPAKKPLPENLNYPSIVAVFSSLSKGWSTKSFIRTATNVGPANSVYRAKIEAPKGVTVKVKPSKLVFSATVKKQSFVVAISADNQNLALGDVGAVFGWLSWSDGKHVVRSPLVVTQLEPL 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7018143 7020461 + Lsi10G004880.1 Lsi10g00488 672045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00488 772 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 21 766 IPR045051 -
Lsi10g00488 772 SUPERFAMILY Subtilisin-like 103 620 IPR036852 GO:0004252|GO:0006508
Lsi10g00488 772 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.7 21 766 - -
Lsi10g00488 772 SUPERFAMILY Protease propeptides/inhibitors 57 100 - -
Lsi10g00488 772 CDD Peptidases_S8_3 102 582 IPR034197 -
Lsi10g00488 772 Pfam PA domain 376 462 IPR003137 -
Lsi10g00488 772 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 104 IPR037045 -
Lsi10g00488 772 PRINTS Subtilisin serine protease family (S8) signature 127 146 IPR015500 -
Lsi10g00488 772 PRINTS Subtilisin serine protease family (S8) signature 211 224 IPR015500 -
Lsi10g00488 772 PRINTS Subtilisin serine protease family (S8) signature 545 561 IPR015500 -
Lsi10g00488 772 ProSiteProfiles Serine proteases, subtilase domain profile. 102 616 - -
Lsi10g00488 772 Pfam Subtilase family 127 590 IPR000209 GO:0006508|GO:0008236
Lsi10g00488 772 SUPERFAMILY PA domain 390 472 IPR046450 -
Lsi10g00488 772 Pfam Peptidase inhibitor I9 48 104 IPR010259 -
Lsi10g00488 772 ProSitePatterns Serine proteases, subtilase family, serine active site. 546 556 IPR023828 -
Lsi10g00488 772 Pfam Fibronectin type-III domain 662 766 IPR041469 -
Lsi10g00488 772 Gene3D - 345 484 - -
Lsi10g00488 772 Gene3D Peptidase S8/S53 domain 129 629 IPR036852 GO:0004252|GO:0006508
Lsi10g00488 772 Gene3D - 633 769 - -
Lsi10g00488 772 CDD PA_subtilisin_like 351 477 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00869 Lsi-Chr6:18205003 Lsi10g00488 Lsi-Chr10:7018143 3.22E-07 dispersed
Lsi08g01515 Lsi-Chr8:23224529 Lsi10g00488 Lsi-Chr10:7018143 0 dispersed
Lsi01g00203 Lsi-Chr1:1900585 Lsi10g00488 Lsi-Chr10:7018143 1.65E-59 transposed
Lsi02g01071 Lsi-Chr2:11826376 Lsi10g00488 Lsi-Chr10:7018143 1.22E-79 transposed
Lsi02g02862 Lsi-Chr2:34835744 Lsi10g00488 Lsi-Chr10:7018143 0 transposed
Lsi10g00488 Lsi-Chr10:7018143 Lsi04g01764 Lsi-Chr4:24883208 2.21E-164 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00488 - - csv:101217844 1444.48