Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00490 ATGGCTTCTTCAAATCCACAACCCACTTCTTCTTCTTCTTCATCCTCCCTCTATCCCTCCGTCGACATGAAAGACCTCGCCGAGAATCTCTTTCCCGACGAAGACCTCCCTGTTTCCGGCCACAAACACCCCGACTCCTTCGAACAAGTCCTCGTTCAAATTCCAGGCGCCATAGTCCATTTAATCGAAAGAAAAAACAGCATCGAACTCGCTTCCGGTGAGTTCTCGATCGTCGGTCTGAGTCAAGGGAACAACGTCGTCGCCGTACTCGCTCGTATTGGGGATCAGATTCAATGGCCATTAGCCAAAGACGAACCCGCTGTAAAACTCGACGATTCTCACTACTTCTTCACTCTCAGCGTTCCCTCAAATGGGTCATCGGGAAATCACGATTCCGCTACCGGAGACGCTAAGCGAGAGCCGGAAATGTTAAACTACGGTCTGACCGTGGCGTCAAAAGGGCAGGAGGATCGATTGAAGGAGTTGGATCGGATATTAGATCAGTACAGTTGTTTTTCGGTTCAGAAAGTGGAGGAATCAGCGAAGTGGGAGGTTTTAGACGGATCAGTAGCGAGGGAAATCTCGCCGGAGGACATGGCGGCGTCTGAGGAGAAAAGGGATTTGCTAGAAGAGAGATCTGCTGCTTATTGGACGACATTGGCACCGAACGTCGACGATTACAGCGGAAAAGTCGCAAGGCTGATTGCAGCTGGTTCGGGACAGGTGATTAAGGGGATTTTGTGGTGTGGGGATGTAACTGTGGATCGATTGAATTGGGGAAATGCGTTTATGAAGAAGCGGATGGGGCCTCGTTCTGATAAAGAGATAAGTCCGGCAGCTATGAAGAGTATAAAGAGGTTTGAAATTGCATTACCCCTTTTCGTTTTTCTGCCATTGAAACTGGAAATTGTAATGTGTTTGGTGTTTTGCAGTGTGAAGAAGCTGACGAAGATGACAGAGAAAGTGGCGAATGGAATACTTTCTGGAGTAGTGAAAGTGTCTGGATTCTTCACAAGTTCGATAGTGAACTCTAAAGTGGGGAAGAAATTCTTCAGTCTTCTTCCTGGAGAAATTGTTCTTGCTTCATTGGATGGATTCAACAAGGTTTGCGATGCAGTTGAAGTAGCAGGAAAGAATGTGATGTCAACTACATCTGTTGTGACTACAGGACTTGTTTCAGAAAGATATGGAGATGAAGCAGGGAAGGCAACGAATGAAGGGTTTGGTGCAGCAGGGCATGCGATTGGAACAGCATGGGCTGTGTTGAAGATCAGAAAGGCTTTAAACCCAAAAAGTGCTTTCAAGCCAACTACACTTGTAAAAGCAGCTGCTGCCCATTCTAATTCCTCTAAGCCTACTGCTAAATAA 1368 46.86 MASSNPQPTSSSSSSSLYPSVDMKDLAENLFPDEDLPVSGHKHPDSFEQVLVQIPGAIVHLIERKNSIELASGEFSIVGLSQGNNVVAVLARIGDQIQWPLAKDEPAVKLDDSHYFFTLSVPSNGSSGNHDSATGDAKREPEMLNYGLTVASKGQEDRLKELDRILDQYSCFSVQKVEESAKWEVLDGSVAREISPEDMAASEEKRDLLEERSAAYWTTLAPNVDDYSGKVARLIAAGSGQVIKGILWCGDVTVDRLNWGNAFMKKRMGPRSDKEISPAAMKSIKRFEIALPLFVFLPLKLEIVMCLVFCSVKKLTKMTEKVANGILSGVVKVSGFFTSSIVNSKVGKKFFSLLPGEIVLASLDGFNKVCDAVEVAGKNVMSTTSVVTTGLVSERYGDEAGKATNEGFGAAGHAIGTAWAVLKIRKALNPKSAFKPTTLVKAAAAHSNSSKPTAK 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7028264 7032458 + Lsi10G004900.1 Lsi10g00490 672047

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00490 455 Pfam Senescence domain 312 444 IPR009686 -
Lsi10g00490 455 Pfam Senescence domain 234 287 IPR009686 -
Lsi10g00490 455 PANTHER SPARTIN 3 451 IPR045036 -
Lsi10g00490 455 PANTHER OS06G0717100 PROTEIN 3 451 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00490 K19366 SPG20; spartin - csv:101218079 729.939
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01095 Lsi-Chr7:16340159 Lsi10g00490 Lsi-Chr10:7028264 1.82E-172 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g148 . . . Bda08g00997 . . Bma05g00361 . . . Cma02g00252 . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00490 . Chy11g00261 . . . . . . Bpe05g00284 . . Sed02g0073 Cmo02g00251 . . . . . . Cpe05g01377 Bhi10g01858 Tan05g1147 Cmetu11g2225 . Hepe08g0287 . . Cla02g01162 Cam02g1238 Cec02g1247 Cco02g1287 Clacu02g1220 Cmu02g1188 Cre02g1499 . Csa02g01384 . Cme11g00386
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002053 1 1 3 3 1 2 3 2 2 2 2 2 3 2 2 2 2 2 3 2 2 2 2 2 2 2 2 3 5 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00490 Lsi_Chr10 FPKM 77.010384 77.560478 99.00705 97.964111 67.997772 65.48156 77.361862 84.886543 82.477417 97.195572