Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00493 ATGGAAACTCGGAGCAGAAAGCGGGCGGAGGCCTCCTCAGCAGCCCCTTCTTCTTCGTCTTCTGGTCCTACTACCCGTTCTACCAAGCGCGCTCGTCTCTCTGGTACTTCCCCATCGAATCTTGCTGCATCTACTCTTTCGATCTCTACACGTTCTCGCTCTACTCGAACCCAAGAACCGTCTGCCACCAGTACTCCAATGGACTCGACTAATGAATCATCAGGGTCACGCCGACGCGGGAAGAACTCTGATAAAGAAAACTCGGACAAGGGGAAGGAGAAGGAACACGAGGTTAGAATTGGTGATAGAGAAAGAAATGCTGATCAGAGCTTTGGGCTAAATATTGAAGGCAGTGGCGCTGGGGAGGATGATGATAACGACAGTGAAGGGGGAATGGGAGTCTTGCAGCAGAATTTATCCACAGCAAGTAGCGCCCTTCAAGGACTTCTCAGGAAACTCGGTGCTGGATTGGATGATTTACTTCCATCTTCTGCAATTGCATCGGCTTCATCCTCACAGCAGAGAGGACGGCTTAAGAAGATCTTATCTGGGTTAAGAGCGGATGGAGAAGAAGGGAGGCAGGTTGAGGCATTGACACAACTCTGTGAGATGCTCTCAATCGGCACAGAGGAGTCTCTAAGTACTTTCTCTGTCGATTCCTTTGTCCCTGTCCTTGTCGGGTTACTTAATCACGAAAGCAATCCTGATATAATGCTTCTAGCGGCTAGGGCTTTAACCCATCTGTGCGATGTCCTTCCTTCATCATGTGCTGCTGTCGTGCACTATGGTGCTGTTTCCTGCTTCTGTGCGAGATTGCTGACTATAGAATACATGGACCTAGCTGAACAGTCCCTGCAAGCTTTAAAGAAGATATCCCAGGAACACCCTACTGCTTGCCTGCGGGCTGGTGCTCTTATGGCTGTGCTTTCATATTTAGATTTCTTCTCTACAGGAGTTCAGCGAGTCGCATTGTCCACTGCTGCTAATATGTGCAAGAAGCTTCCTTCAGATGCAGCTGACTTTGTGATGGAAGCTGTTCCCCTGCTGACAAACCTTCTTCAGTATCATGATGCAAAAGTGTTGGAGCATGCTTCAGTTTGTTTGACTCGTATTGCGGAGGCCTTTGCATCATCTCCTGATAAATTAGATGAACTATGTAACCATGGACTTGTTACGCAAGCTGCCTCACTTATTTCCACCAGCAGTACTGGAGGTGGACAGTCAACTCTTGGCTCAGCTACTTACACAGGATTAATCCGACTTCTTTCCACATGTGCAAGTGGATCTGCCTTAGGTGCAAAAACTTTACTGCTTCTTGGGATCAGTGGGATTCTTAAAGATATATTATCTGGTTCTGGCGTGTCTACTAATGCATCTGTTTCACCTGCATTAAATAGACCACAAGAGCAGATTTTTGAGATAGTCAACTTGGCAAATGAGCTTCTACCTCCTCTACCTCAAGGAACTATTTCCTTTCCGCCCAACTTTAATTTGTTTGTGAAAGGACCCGTCATCAAGAAGCCATCTACTAGCGGTTCCGTGAAAGAAGAAGATCCAAGTGATAGTGCTCCAGAAGTGTCAGCTCGTGAGAAACTTTTAAAGGATCAGCCTGAGCTCCTCCTCCAATTTGGAATGGATCTCCTTCCCATTTTAATACAGATCTATGGTTCCAGTGTGAATGGTCCAGTACGTCATAAATGTCTCTCAGGAATTGGAAAATTGATGTACTTCAGCACTCCAGAGATGATACAATCATTATTGAATGTGACTAATATAGCAAGTTTTCTAGCTGGTGTTTTGGCATGGAAAGATCCACACATTCTGGTTCCTGCTCTCCAAATTGCTGAGATTCTTATGGAAAAGCTTCATGAAACGTTTTCTAAGATGTTCCTTCGAGAGGGTGTTGTTTATGCTGTTGACCAGCTTATCTTGGCTAATAACCAAAATACTTCTTCCCAAGCGGCTTCTGTCGAGAAGGATAACAACTCTGCATCCGGAACTTCCTCTCGCACTCGACGTTATAGGCGGCGTAGTGGAAATATGAATTCGGATGGAAGTTCACTGGACGAAAACAAGAATTCTGTTTCTGGAAGTGGTGTTCCGCAGGGTTCGGTGGAGGTTCCATCAGTTAATTCTAATCTCCGAACTTCTGTAAGTTCCTGTGCCAATGCTTTTAAAACTAAGTACTTCCCTTTAGATCCGGGAGATGTCGAAGTTGGAGTTACAGATGATCTCTTACGTTTGAAGAATCTTTGTGTCAAGTTGAATGCTGGTATTGATGATCAGAAGAGTAAATCAAAAGGAAAGTTGAAAGTGTCAGGGTCCCGCCTAGATGATATTATTACAAATAAGGAAGAGTATTTAACTGGCGTGATATCTGAAATGCTAGTTGAATTGGGAAAAGATGATGGTGTTTCCACTTTTGAATTTATTGGTAGTGGTGTTGTTGGAGTTCTGCTTAACTACTTTTCTTGCGGATACTTTTCTAAAGGAAGAATCTCGGAAGTTGAGTTGCCAAAGCTTCGGCAACAAGTGCTTAAAAGATTTAAATCATTTATTTCTGTTGCCCTTCCTACAAGCATTAATGAGAGGACGGTAGCTCCTATGGCAGTCTTAGTTCAAAAGCTGCAGAGTGCTTTATCCTCGTTGGAGCGTTTTCCAGTTGTCCTGAGCCATTCTTCTAGATCATCCAGTGGTAGTGCCCGGCTTTCCTCTGGGCTAAGTGTATTATCTCAGCCATTTAAGTTACGACTTTGTCGAGCCCAGGGAGAAAAATCACTTCGTGATTATTCATCAAATATTGTTCTGATTGATCCATTGGCAAGTTTAGCAGCTGTTGAAGAATTTCTGTGGCCTAGAGTTCAGAAAAGTGAATCTGCTCAGAAACCTTCAGCATCTGGGGCAAACTCAGATTCAGGAACTACGCCTCCAGGAAATGTTGCCCCATCAGGGTTAAGTTCAACCCCCAGTTCAACCACTCGTCGATACTCTACTAGGTCTAGATCATCAATGACTATTGGAGAAAGAGCAGGGAAGGAATCTTCACAGGAGAAAAGCACATCAAAGGGGAAGGGGAAAGCTATCCTAAAGCCTGCCTGGGAGGAGAAGAGAGGCTTGCAAACTAGAAGTTCTACTCGTAGAAGAGCAGCTGTGGACAAGGATGCCCAAATGAAGCCTGTAAATGGAGAGACTACATCTGAGGATGAAGAATTGGACCTATCCTCCATCCAGATTGATGATTCTTTAGTGATTGAGGATGATGATATTTCTGATGATGAAGATGATGACCATGATGATGTGCTGCAGGATGACTCTCTTCCTCTCTGTATGCCTGAAAAGGTGCATGATGTCAAATTGGGAGACACAGTTGAAGATGGGGATGCTGGTCCAGCTACAAGTGATGGCCAGATTCATTCAACCTTTGGCTCTAGCAGCAGAGCTGCTACAGTCAGGGGTTCTAATTCTCCGGATCATAGGAGTGGCAATTCTTTTAGTTCGAGGGGAGGTATGTCATTTGCTGCTGCAGCTATGGCTGGGCTCGGACCAGCTAATGGCAGGGGTTTCCGTGGAGGTCGGGATCCACAGGGACGTCCTCTCTTCAGTGGCTCCAATGATAACCCAAAATTACTTTTTTCTTCTGGTGAGAAGCAGCTTGACAGGCATTTGACAATATACCAAGCTGTTCAACGCCAGCTTGTTTTGAATGAAGACGATGATGAGAGGTTTGCCGGTGCTGGCAGTGATTTCTTATCTAACGATGGGAGCAGTTTATGGGGTGATATATATACTATCACGTATCAGAGGGCAGATAATCAAACTGAAAGGGCTGCTTTAGCTGGGGAATCAAGCTCCTCAAAATCTAAATCTACCAAATGTGTATCGACTTCCAATTCAAATTCAGAGTCTCAATTCCATCAAATGTCACTTTTAGATAGTATTTTACAAGGAAAACTTCCATGTGATTTTGACAAATCTAATCCTACATATGATATACTATCTTTATTGCGTGTACTTGAGGGATTGAATCAGCTTGCTCCACGCTTAAGGGCACAGATCGTGTCGGATCAGTTTGCAGAGGGAAAGATCACTACACTTGATGAACTAGGTGGAATTGGTGGAAAGGTTCCTCATGAGGAATTTATCAATAGTAAGCTTACTCCCAAGTTGGCTCGACAAATTCAGGACGCTCTTGCACTATGCAGTGGGAGTCTTCCCTCATGGTGTTACCAATTGACTAAGGCATGTCCGTTCTTATTTCCTTTTGAGACCCGCCGACAGTATTTCTATTCAACTGCATTTGGGCTGTCACGTGCATTATATCGGCTACATCAGCAGCAAGGAGCTGATGGTCTTGGAACAGTAAATGAACGAGAGGGAAGGGTTGGAAGATTGCAGCGTCAGAAGGTTCGTGTCTCCCGTAATCGTATATTGGATTCTGCTGCGAAAGTTATGGAGATGTATTCTAGCCAGAAGGCTGTTCTTGAAGTAGAATATTTTGGTGAAGTGGGAACTGGATTAGGTCCTACCCTTGAGTTCTACACACTTTTAAGTCATGAATTGCAGAGGGCTGGACTTGGAATGTGGAGGTCTAATTCATTGCAAGAGTCAACAGATAGTGGTGAAGATGGACAGGTTAGGAAGGCTAAAGGTGGCTCTAGGCTTACTTCTGATGCAGCTCAATCTCCTCTTGGTTTGTTTCCTCGACCTTGGCCACCAAATGCTGATTCTTCTGATGGCAGCCAATTTTCGAAGGTTATTGAATATTTCCGGCTTGTCGGTCGTGTGATGGCCAAAGCTCTGCAAGATGGAAGACTATTGGATCTACCGCTCTCAACAGCATTTTATAAGCTTGTTCTTGGTCAAGATCTTGATTTACATGATATCCTCTCATTTGACGCTGAGCTTGGAAAGACTTTACAAGAATTGCAGGCTCTTGTTTGCCGGAAACAGTATTTAGGATCGATAAATGGTGATAATCAAAATACAATTTCCAACTTGACTTTCCGTGGGATTCCAGTTGAAGATCTCTGCTTGGATTTTACAGTTCCTGGTTATCCAGACTACGTTTTGAGACCAGGAGATGAAACTGTTAATATTCATAACTTGGAGGAGTATATATCCTTGGTATTAGATGCGACTGTCAAGACTGGAATAATGCGGCAAATGGAAGCATTTACTGCAGGATTCAATCAGGTATTTGACATCACAGCATTACGCATATTCATCCCTCATGAGTTGGACCATTTGCTCTGTGGCCGTAGAGAATTGTGGAAGGCCGACACACTTGTCGATCATATTAAATTTGATCATGGATACACAGCCAAGAGTCCTGCAATAGTCAATTTTCTTGAGATTATGGGCGAATTCACACCGGAACAGCAGCGAGCATTCTGCCAGTTTGTTACAGGTGCACCTAGGCTTCCACCAGGTGGCCTTGCAGTGTTGAACCCAAGATTGACTATTGTGAGAAAGCACTCATCAACTGCAACTAACACAACAAACAGCGCGACGGGGGCTTCCGAGGCAGCTGATGATGATTTACCTAGTGTCATGACATGTGCCAATTACCTTAAGCTTCCTCCATACTCGACGAAGGAATTCGTTGGATTCCCTCCGCATCCTGGGTGGTTATTGGCTGATACATACGAACAAGAAGAAGCGCAAGCCATGGCCAACGAAGAAGACGATCTCGATCTTCTCCTTTCTCTCCAAGATAAAGTCGGTGAAACTCCTCCTGGAACTCCGCCTCATACCTTAGATCTTCTATCTGACGATGAATCACCAAGACGAGCAGGTCCTGCGGATATGTCTATCTTCAGAAACGCTGTCAAAGACTGCCTTGATTATGACCATATACCAACTGAAAAAAGTGGAAAAACGAACCGGTCTAAGGCCTCTAATGATGTTTCAATCGAGAAGTTTTCTGGTTTGCGAGTGAGGAATCAACTTGTAGCACCTGCAGAACTTCGCGATCGTTTTTCTGACATTCGCTTTGTTCGTTTGTCTACCATAAAGAATCTGTTGGTTGGGGACACCCTTTCAGGCTGTTGGGTAACTGTCGGAGTGTTGACTGAGAAAGGAAGTCCAAAAACAAGCTCTACAGGGAAAGCTTACTCTATCTGGAAACTTAGTTGTTTGGATGAAAACACTGTTTCTGTTTTCTTATTTGGTGACGCTTATAAAAGAAATTGCAAGGAGCTGGCTGGAACAGTTTTTGCGCTTTTTAACTCTACAGTACGAAAGGATGCAACGGGCATGGGGTTTTCTTTAAGTGTGTATCAACCAAGCCAGTTGTTAAAGATGGGCACTTCAGATGACTATGGAGTATGCAAGGGGAAGAAGAAGGATGGGATTGCTTGTACAACAGTTATAAATAGGCGACGTGGCATATACTGTAAATATCATAAATCAAAGGCATCGGAAAAATATTCCACAACCACACGAACTGAGCTTAAAGGAGGGAATCTGAGGACTGCATTCAGAGATTATCATCTCAAGCCAGAAGGAGTTTACATGGTAGATCCGCTAGCTCGTAAAGTGACTTCTAAGAAGCCAGCACAGCCGGTAAAACTGTTGTCTGTGGAAGGCCTGAAAAGGGCATTGAGCAATGCAGATAAAGTGACCACCAATGCACACTCACAAGGGAAAAGATTCCTTGCTGAGATCACAGGGAAACTTACTAGGAAAAGTGTAAATAAAGAATTAGCCAAACAAAGTCAGCAGAAGAGCAGTTCAGAGAAAACGTCAATTTTGAAGTCATCTACCATGAAACTGGATTCAAGAGTTGAAAACCAACAACCAGATCCAAAAAGAAAGAAAACCGACCATACTCCGGTAGACAAAACCACAAAAGATACAGGGAAGATGATAGAGTTAGATTATGTTAGTTCAGATGATGATATCGACCTTATATTCACCCGATAA 6924 43.96 METRSRKRAEASSAAPSSSSSGPTTRSTKRARLSGTSPSNLAASTLSISTRSRSTRTQEPSATSTPMDSTNESSGSRRRGKNSDKENSDKGKEKEHEVRIGDRERNADQSFGLNIEGSGAGEDDDNDSEGGMGVLQQNLSTASSALQGLLRKLGAGLDDLLPSSAIASASSSQQRGRLKKILSGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISTSSTGGGQSTLGSATYTGLIRLLSTCASGSALGAKTLLLLGISGILKDILSGSGVSTNASVSPALNRPQEQIFEIVNLANELLPPLPQGTISFPPNFNLFVKGPVIKKPSTSGSVKEEDPSDSAPEVSAREKLLKDQPELLLQFGMDLLPILIQIYGSSVNGPVRHKCLSGIGKLMYFSTPEMIQSLLNVTNIASFLAGVLAWKDPHILVPALQIAEILMEKLHETFSKMFLREGVVYAVDQLILANNQNTSSQAASVEKDNNSASGTSSRTRRYRRRSGNMNSDGSSLDENKNSVSGSGVPQGSVEVPSVNSNLRTSVSSCANAFKTKYFPLDPGDVEVGVTDDLLRLKNLCVKLNAGIDDQKSKSKGKLKVSGSRLDDIITNKEEYLTGVISEMLVELGKDDGVSTFEFIGSGVVGVLLNYFSCGYFSKGRISEVELPKLRQQVLKRFKSFISVALPTSINERTVAPMAVLVQKLQSALSSLERFPVVLSHSSRSSSGSARLSSGLSVLSQPFKLRLCRAQGEKSLRDYSSNIVLIDPLASLAAVEEFLWPRVQKSESAQKPSASGANSDSGTTPPGNVAPSGLSSTPSSTTRRYSTRSRSSMTIGERAGKESSQEKSTSKGKGKAILKPAWEEKRGLQTRSSTRRRAAVDKDAQMKPVNGETTSEDEELDLSSIQIDDSLVIEDDDISDDEDDDHDDVLQDDSLPLCMPEKVHDVKLGDTVEDGDAGPATSDGQIHSTFGSSSRAATVRGSNSPDHRSGNSFSSRGGMSFAAAAMAGLGPANGRGFRGGRDPQGRPLFSGSNDNPKLLFSSGEKQLDRHLTIYQAVQRQLVLNEDDDERFAGAGSDFLSNDGSSLWGDIYTITYQRADNQTERAALAGESSSSKSKSTKCVSTSNSNSESQFHQMSLLDSILQGKLPCDFDKSNPTYDILSLLRVLEGLNQLAPRLRAQIVSDQFAEGKITTLDELGGIGGKVPHEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLHQQQGADGLGTVNEREGRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHELQRAGLGMWRSNSLQESTDSGEDGQVRKAKGGSRLTSDAAQSPLGLFPRPWPPNADSSDGSQFSKVIEYFRLVGRVMAKALQDGRLLDLPLSTAFYKLVLGQDLDLHDILSFDAELGKTLQELQALVCRKQYLGSINGDNQNTISNLTFRGIPVEDLCLDFTVPGYPDYVLRPGDETVNIHNLEEYISLVLDATVKTGIMRQMEAFTAGFNQVFDITALRIFIPHELDHLLCGRRELWKADTLVDHIKFDHGYTAKSPAIVNFLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPRLTIVRKHSSTATNTTNSATGASEAADDDLPSVMTCANYLKLPPYSTKEFVGFPPHPGWLLADTYEQEEAQAMANEEDDLDLLLSLQDKVGETPPGTPPHTLDLLSDDESPRRAGPADMSIFRNAVKDCLDYDHIPTEKSGKTNRSKASNDVSIEKFSGLRVRNQLVAPAELRDRFSDIRFVRLSTIKNLLVGDTLSGCWVTVGVLTEKGSPKTSSTGKAYSIWKLSCLDENTVSVFLFGDAYKRNCKELAGTVFALFNSTVRKDATGMGFSLSVYQPSQLLKMGTSDDYGVCKGKKKDGIACTTVINRRRGIYCKYHKSKASEKYSTTTRTELKGGNLRTAFRDYHLKPEGVYMVDPLARKVTSKKPAQPVKLLSVEGLKRALSNADKVTTNAHSQGKRFLAEITGKLTRKSVNKELAKQSQQKSSSEKTSILKSSTMKLDSRVENQQPDPKRKKTDHTPVDKTTKDTGKMIELDYVSSDDDIDLIFTR 2307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7075319 7095868 + Lsi10G004930.1 Lsi10g00493 672050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 1275 1299 - -
Lsi10g00493 2307 SUPERFAMILY ARM repeat 177 647 IPR016024 -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 1531 1579 - -
Lsi10g00493 2307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 49 1867 IPR045322 GO:0006511|GO:0061630
Lsi10g00493 2307 Pfam HECT-domain (ubiquitin-transferase) 1514 1866 IPR000569 GO:0004842
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 10 73 - -
Lsi10g00493 2307 Gene3D Hect, E3 ligase catalytic domains 1407 1648 - -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 2235 2289 - -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 511 527 - -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 1906 1931 - -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 74 106 - -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 1183 1207 - -
Lsi10g00493 2307 Gene3D - 179 660 IPR011989 -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 1 134 - -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 680 708 - -
Lsi10g00493 2307 CDD HECTc 1467 1866 IPR000569 GO:0004842
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 2263 2289 - -
Lsi10g00493 2307 Gene3D Hect, E3 ligase catalytic domain 1757 1868 - -
Lsi10g00493 2307 Gene3D - 1962 2136 IPR012340 -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 650 669 - -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 1011 1054 - -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 1133 1167 - -
Lsi10g00493 2307 SUPERFAMILY Hect, E3 ligase catalytic domain 1459 1866 IPR035983 GO:0004842
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 1066 1101 - -
Lsi10g00493 2307 SMART hect_3 1478 1885 IPR000569 GO:0004842
Lsi10g00493 2307 Pfam Primase zinc finger 2102 2144 IPR015408 GO:0005634|GO:0006260
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 1109 1123 - -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 958 1010 - -
Lsi10g00493 2307 ProSiteProfiles HECT domain profile. 1491 1866 IPR000569 GO:0004842
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 508 527 - -
Lsi10g00493 2307 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 49 1867 - -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 958 1167 - -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 2235 2262 - -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 650 708 - -
Lsi10g00493 2307 SMART arm_5 209 250 IPR000225 GO:0005515
Lsi10g00493 2307 SMART arm_5 335 373 IPR000225 GO:0005515
Lsi10g00493 2307 SMART arm_5 292 332 IPR000225 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00493 K10590 TRIP12; E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26] - csv:101218793 3307.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01467 Lsi-Chr9:22661398 Lsi10g00493 Lsi-Chr10:7075319 2.06E-14 dispersed
Lsi10g00493 Lsi-Chr10:7075319 Lsi11g00613 Lsi-Chr11:6530706 5.77E-12 dispersed
Lsi10g00493 Lsi-Chr10:7075319 Lsi03g02055 Lsi-Chr3:31865008 8.66E-126 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g157 . . . Bda08g00993 . . Bma05g00365 . . . . Cma20g00753 . Car20g00654 . . . . . . . . . . . . . . . . . . . . . Lsi10g00493 . Chy11g00257 . . . . . . Bpe05g00287 . . Sed05g3488 . Cmo20g00749 . . . . Cpe16g00316 . Bhi10g01853 Tan05g1140 Cmetu11g2130 . Hepe08g0291 . . . . . . . . . . Csa02g01390 . Cme11g00382
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g00008 . 108 393 Core DNA Replication Machinery Family AT4G14700 52.6 2.6e-76 283.9
Lsi08g00009 . 1 140 Core DNA Replication Machinery Family AT4G14700 68.1 5.7e-55 213.0
Lsi08g00008 . 108 393 Core DNA Replication Machinery Family AT4G12620 55.3 1.1e-82 305.1
Lsi08g00009 . 1 140 Core DNA Replication Machinery Family AT4G12620 69.5 6.8e-56 216.1
Lsi08g01455 . 2 372 Core DNA Replication Machinery Family AT2G37560 63.6 2.3e-138 488.8
Lsi04g01057 . 6 378 Core DNA Replication Machinery Family AT2G01120 63.4 1.4e-134 476.5
Lsi09g01574 . 3 536 Core DNA Replication Machinery Family AT4G29910 58.6 8.6e-175 610.5
Lsi11g00986 . 1 283 Core DNA Replication Machinery Family AT1G26840 65.4 1.7e-94 342.8
Lsi11g01609 . 80 903 Core DNA Replication Machinery Family AT1G79150 54.4 4.0e-229 791.6
Lsi03g01268 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.7 0.0e+00 1352.8
Lsi01g00160 . 107 687 Core DNA Replication Machinery Family AT5G46280 78.6 4.3e-259 890.6
Lsi11g01129 . 1 931 Core DNA Replication Machinery Family AT2G16440 69.3 0.0e+00 1105.9
Lsi11g00378 . 1087 1862 Core DNA Replication Machinery Family AT2G07690 73.6 0.0e+00 1080.9
Lsi01g00004 . 7 923 Core DNA Replication Machinery Family AT5G44635 61.5 2.1e-310 1061.6
Lsi02g02475 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.1 0.0e+00 1218.0
Lsi10g01424 . 36 481 Core DNA Replication Machinery Family AT2G29680 50.6 7.8e-127 451.1
Lsi10g01424 . 37 483 Core DNA Replication Machinery Family AT1G07270 52.1 1.7e-120 429.9
Lsi02g02100 . 758 1350 Core DNA Replication Machinery Family AT3G25100 76.4 2.5e-257 884.8
Lsi03g02053 . 26 672 Core DNA Replication Machinery Family AT3G09660 66.3 2.9e-237 818.5
Lsi03g02054 . 12 181 Core DNA Replication Machinery Family AT3G09660 81.2 6.6e-72 269.2
Lsi03g00736 . 22 377 Core DNA Replication Machinery Family AT2G14050 67.4 9.9e-151 530.8
Lsi03g00738 . 16 198 Core DNA Replication Machinery Family AT2G14050 53.0 2.5e-45 180.6
Lsi10g00493 . 1890 2300 Core DNA Replication Machinery Family AT2G20980 55.5 8.0e-119 424.1
Lsi02g02726 . 1 200 Core DNA Replication Machinery Family AT1G80190 67.3 9.5e-76 280.0
Lsi03g00967 . 1 145 Core DNA Replication Machinery Family AT3G12530 73.1 4.9e-61 230.7
Lsi03g00307 . 5 188 Core DNA Replication Machinery Family AT1G19080 68.5 1.9e-70 262.3
Lsi03g00307 . 5 188 Core DNA Replication Machinery Family AT3G55490 68.5 1.9e-70 262.3
Lsi05g02052 . 6 171 Core DNA Replication Machinery Family AT5G49010 57.2 1.3e-45 179.9
Lsi10g00533 . 1 1707 Core DNA Replication Machinery Family AT5G67100 52.7 0.0e+00 1597.8
Lsi02g00133 . 2 572 Core DNA Replication Machinery Family AT1G67630 53.8 5.1e-181 631.3
Lsi09g01731 . 1 409 Core DNA Replication Machinery Family AT1G67320 59.1 4.2e-162 568.2
Lsi08g00158 . 10 382 Core DNA Replication Machinery Family AT5G41880 58.0 2.9e-125 445.7
Lsi08g00157 . 57 255 Core DNA Replication Machinery Family AT5G41880 60.4 1.1e-76 284.3
Lsi01g01175 . 1 968 Core DNA Replication Machinery Family AT5G63960 69.8 0.0e+00 1424.5
Lsi03g01734 . 1 550 Core DNA Replication Machinery Family AT2G42120 57.6 1.9e-177 619.0
Lsi09g01731 . 1 409 Core DNA Replication Machinery Family AT1G67320 59.1 4.2e-162 568.2
Lsi10g01177 . 1 1996 Core DNA Replication Machinery Family AT1G08260 64.8 0.0e+00 2626.3
Lsi02g01714 . 8 1499 Core DNA Replication Machinery Family AT1G08260 65.4 0.0e+00 1877.4
Lsi02g01713 . 15 187 Core DNA Replication Machinery Family AT1G08260 55.6 1.1e-44 180.3
Lsi10g01177 . 25 2103 Core DNA Replication Machinery Family AT2G27120 62.0 0.0e+00 2599.7
Lsi02g01714 . 31 1499 Core DNA Replication Machinery Family AT2G27120 63.2 0.0e+00 1778.5
Lsi02g01713 . 24 187 Core DNA Replication Machinery Family AT2G27120 53.9 5.6e-41 167.9
Lsi02g00021 . 74 324 Core DNA Replication Machinery Family AT5G22110 78.1 5.8e-119 424.9
Lsi02g00022 . 7 218 Core DNA Replication Machinery Family AT5G22110 59.2 2.6e-58 223.4
Lsi10g01127 . 71 1019 Core DNA Replication Machinery Family AT5G22010 59.9 1.9e-285 978.8
Lsi07g01383 . 54 433 Core DNA Replication Machinery Family AT1G63160 70.3 3.4e-139 491.5
Lsi01g01707 . 1 357 Core DNA Replication Machinery Family AT5G27740 79.3 1.3e-165 579.3
Lsi04g02414 . 36 285 Core DNA Replication Machinery Family AT1G21690 62.5 1.1e-97 353.6
Lsi08g00447 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.6 1.5e-156 549.3
Lsi11g00167 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.8 2.3e-253 871.7
Lsi07g01137 . 32 704 Core DNA Replication Machinery Family AT2G06510 51.0 1.2e-198 689.9
Lsi06g01410 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.6 2.7e-251 864.8
Lsi07g01137 . 10 813 Core DNA Replication Machinery Family AT5G45400 52.5 4.0e-232 801.6
Lsi06g01410 . 1 618 Core DNA Replication Machinery Family AT5G61000 67.4 2.7e-246 848.2
Lsi07g01137 . 5 799 Core DNA Replication Machinery Family AT4G19130 54.8 1.1e-228 790.0
Lsi06g00020 . 1 385 Core DNA Replication Machinery Family AT5G26680 78.8 2.2e-175 612.1
Lsi07g00045 . 42 374 Core DNA Replication Machinery Family AT2G25100 59.5 7.1e-106 380.6
Lsi10g01227 . 44 804 Core DNA Replication Machinery Family AT1G08130 69.2 3.8e-298 1020.8
Lsi10g01227 . 204 804 Core DNA Replication Machinery Family AT1G49250 69.6 5.9e-244 840.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003449 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 2 2 2 1 1 3 4 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00493 Lsi_Chr10 FPKM 2.303487 2.524462 1.547157 1.987823 2.41497 2.362452 2.569743 0.325142 0.209928 0.235095