Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00493 ATGGAAACTCGGAGCAGAAAGCGGGCGGAGGCCTCCTCAGCAGCCCCTTCTTCTTCGTCTTCTGGTCCTACTACCCGTTCTACCAAGCGCGCTCGTCTCTCTGGTACTTCCCCATCGAATCTTGCTGCATCTACTCTTTCGATCTCTACACGTTCTCGCTCTACTCGAACCCAAGAACCGTCTGCCACCAGTACTCCAATGGACTCGACTAATGAATCATCAGGGTCACGCCGACGCGGGAAGAACTCTGATAAAGAAAACTCGGACAAGGGGAAGGAGAAGGAACACGAGGTTAGAATTGGTGATAGAGAAAGAAATGCTGATCAGAGCTTTGGGCTAAATATTGAAGGCAGTGGCGCTGGGGAGGATGATGATAACGACAGTGAAGGGGGAATGGGAGTCTTGCAGCAGAATTTATCCACAGCAAGTAGCGCCCTTCAAGGACTTCTCAGGAAACTCGGTGCTGGATTGGATGATTTACTTCCATCTTCTGCAATTGCATCGGCTTCATCCTCACAGCAGAGAGGACGGCTTAAGAAGATCTTATCTGGGTTAAGAGCGGATGGAGAAGAAGGGAGGCAGGTTGAGGCATTGACACAACTCTGTGAGATGCTCTCAATCGGCACAGAGGAGTCTCTAAGTACTTTCTCTGTCGATTCCTTTGTCCCTGTCCTTGTCGGGTTACTTAATCACGAAAGCAATCCTGATATAATGCTTCTAGCGGCTAGGGCTTTAACCCATCTGTGCGATGTCCTTCCTTCATCATGTGCTGCTGTCGTGCACTATGGTGCTGTTTCCTGCTTCTGTGCGAGATTGCTGACTATAGAATACATGGACCTAGCTGAACAGTCCCTGCAAGCTTTAAAGAAGATATCCCAGGAACACCCTACTGCTTGCCTGCGGGCTGGTGCTCTTATGGCTGTGCTTTCATATTTAGATTTCTTCTCTACAGGAGTTCAGCGAGTCGCATTGTCCACTGCTGCTAATATGTGCAAGAAGCTTCCTTCAGATGCAGCTGACTTTGTGATGGAAGCTGTTCCCCTGCTGACAAACCTTCTTCAGTATCATGATGCAAAAGTGTTGGAGCATGCTTCAGTTTGTTTGACTCGTATTGCGGAGGCCTTTGCATCATCTCCTGATAAATTAGATGAACTATGTAACCATGGACTTGTTACGCAAGCTGCCTCACTTATTTCCACCAGCAGTACTGGAGGTGGACAGTCAACTCTTGGCTCAGCTACTTACACAGGATTAATCCGACTTCTTTCCACATGTGCAAGTGGATCTGCCTTAGGTGCAAAAACTTTACTGCTTCTTGGGATCAGTGGGATTCTTAAAGATATATTATCTGGTTCTGGCGTGTCTACTAATGCATCTGTTTCACCTGCATTAAATAGACCACAAGAGCAGATTTTTGAGATAGTCAACTTGGCAAATGAGCTTCTACCTCCTCTACCTCAAGGAACTATTTCCTTTCCGCCCAACTTTAATTTGTTTGTGAAAGGACCCGTCATCAAGAAGCCATCTACTAGCGGTTCCGTGAAAGAAGAAGATCCAAGTGATAGTGCTCCAGAAGTGTCAGCTCGTGAGAAACTTTTAAAGGATCAGCCTGAGCTCCTCCTCCAATTTGGAATGGATCTCCTTCCCATTTTAATACAGATCTATGGTTCCAGTGTGAATGGTCCAGTACGTCATAAATGTCTCTCAGGAATTGGAAAATTGATGTACTTCAGCACTCCAGAGATGATACAATCATTATTGAATGTGACTAATATAGCAAGTTTTCTAGCTGGTGTTTTGGCATGGAAAGATCCACACATTCTGGTTCCTGCTCTCCAAATTGCTGAGATTCTTATGGAAAAGCTTCATGAAACGTTTTCTAAGATGTTCCTTCGAGAGGGTGTTGTTTATGCTGTTGACCAGCTTATCTTGGCTAATAACCAAAATACTTCTTCCCAAGCGGCTTCTGTCGAGAAGGATAACAACTCTGCATCCGGAACTTCCTCTCGCACTCGACGTTATAGGCGGCGTAGTGGAAATATGAATTCGGATGGAAGTTCACTGGACGAAAACAAGAATTCTGTTTCTGGAAGTGGTGTTCCGCAGGGTTCGGTGGAGGTTCCATCAGTTAATTCTAATCTCCGAACTTCTGTAAGTTCCTGTGCCAATGCTTTTAAAACTAAGTACTTCCCTTTAGATCCGGGAGATGTCGAAGTTGGAGTTACAGATGATCTCTTACGTTTGAAGAATCTTTGTGTCAAGTTGAATGCTGGTATTGATGATCAGAAGAGTAAATCAAAAGGAAAGTTGAAAGTGTCAGGGTCCCGCCTAGATGATATTATTACAAATAAGGAAGAGTATTTAACTGGCGTGATATCTGAAATGCTAGTTGAATTGGGAAAAGATGATGGTGTTTCCACTTTTGAATTTATTGGTAGTGGTGTTGTTGGAGTTCTGCTTAACTACTTTTCTTGCGGATACTTTTCTAAAGGAAGAATCTCGGAAGTTGAGTTGCCAAAGCTTCGGCAACAAGTGCTTAAAAGATTTAAATCATTTATTTCTGTTGCCCTTCCTACAAGCATTAATGAGAGGACGGTAGCTCCTATGGCAGTCTTAGTTCAAAAGCTGCAGAGTGCTTTATCCTCGTTGGAGCGTTTTCCAGTTGTCCTGAGCCATTCTTCTAGATCATCCAGTGGTAGTGCCCGGCTTTCCTCTGGGCTAAGTGTATTATCTCAGCCATTTAAGTTACGACTTTGTCGAGCCCAGGGAGAAAAATCACTTCGTGATTATTCATCAAATATTGTTCTGATTGATCCATTGGCAAGTTTAGCAGCTGTTGAAGAATTTCTGTGGCCTAGAGTTCAGAAAAGTGAATCTGCTCAGAAACCTTCAGCATCTGGGGCAAACTCAGATTCAGGAACTACGCCTCCAGGAAATGTTGCCCCATCAGGGTTAAGTTCAACCCCCAGTTCAACCACTCGTCGATACTCTACTAGGTCTAGATCATCAATGACTATTGGAGAAAGAGCAGGGAAGGAATCTTCACAGGAGAAAAGCACATCAAAGGGGAAGGGGAAAGCTATCCTAAAGCCTGCCTGGGAGGAGAAGAGAGGCTTGCAAACTAGAAGTTCTACTCGTAGAAGAGCAGCTGTGGACAAGGATGCCCAAATGAAGCCTGTAAATGGAGAGACTACATCTGAGGATGAAGAATTGGACCTATCCTCCATCCAGATTGATGATTCTTTAGTGATTGAGGATGATGATATTTCTGATGATGAAGATGATGACCATGATGATGTGCTGCAGGATGACTCTCTTCCTCTCTGTATGCCTGAAAAGGTGCATGATGTCAAATTGGGAGACACAGTTGAAGATGGGGATGCTGGTCCAGCTACAAGTGATGGCCAGATTCATTCAACCTTTGGCTCTAGCAGCAGAGCTGCTACAGTCAGGGGTTCTAATTCTCCGGATCATAGGAGTGGCAATTCTTTTAGTTCGAGGGGAGGTATGTCATTTGCTGCTGCAGCTATGGCTGGGCTCGGACCAGCTAATGGCAGGGGTTTCCGTGGAGGTCGGGATCCACAGGGACGTCCTCTCTTCAGTGGCTCCAATGATAACCCAAAATTACTTTTTTCTTCTGGTGAGAAGCAGCTTGACAGGCATTTGACAATATACCAAGCTGTTCAACGCCAGCTTGTTTTGAATGAAGACGATGATGAGAGGTTTGCCGGTGCTGGCAGTGATTTCTTATCTAACGATGGGAGCAGTTTATGGGGTGATATATATACTATCACGTATCAGAGGGCAGATAATCAAACTGAAAGGGCTGCTTTAGCTGGGGAATCAAGCTCCTCAAAATCTAAATCTACCAAATGTGTATCGACTTCCAATTCAAATTCAGAGTCTCAATTCCATCAAATGTCACTTTTAGATAGTATTTTACAAGGAAAACTTCCATGTGATTTTGACAAATCTAATCCTACATATGATATACTATCTTTATTGCGTGTACTTGAGGGATTGAATCAGCTTGCTCCACGCTTAAGGGCACAGATCGTGTCGGATCAGTTTGCAGAGGGAAAGATCACTACACTTGATGAACTAGGTGGAATTGGTGGAAAGGTTCCTCATGAGGAATTTATCAATAGTAAGCTTACTCCCAAGTTGGCTCGACAAATTCAGGACGCTCTTGCACTATGCAGTGGGAGTCTTCCCTCATGGTGTTACCAATTGACTAAGGCATGTCCGTTCTTATTTCCTTTTGAGACCCGCCGACAGTATTTCTATTCAACTGCATTTGGGCTGTCACGTGCATTATATCGGCTACATCAGCAGCAAGGAGCTGATGGTCTTGGAACAGTAAATGAACGAGAGGGAAGGGTTGGAAGATTGCAGCGTCAGAAGGTTCGTGTCTCCCGTAATCGTATATTGGATTCTGCTGCGAAAGTTATGGAGATGTATTCTAGCCAGAAGGCTGTTCTTGAAGTAGAATATTTTGGTGAAGTGGGAACTGGATTAGGTCCTACCCTTGAGTTCTACACACTTTTAAGTCATGAATTGCAGAGGGCTGGACTTGGAATGTGGAGGTCTAATTCATTGCAAGAGTCAACAGATAGTGGTGAAGATGGACAGGTTAGGAAGGCTAAAGGTGGCTCTAGGCTTACTTCTGATGCAGCTCAATCTCCTCTTGGTTTGTTTCCTCGACCTTGGCCACCAAATGCTGATTCTTCTGATGGCAGCCAATTTTCGAAGGTTATTGAATATTTCCGGCTTGTCGGTCGTGTGATGGCCAAAGCTCTGCAAGATGGAAGACTATTGGATCTACCGCTCTCAACAGCATTTTATAAGCTTGTTCTTGGTCAAGATCTTGATTTACATGATATCCTCTCATTTGACGCTGAGCTTGGAAAGACTTTACAAGAATTGCAGGCTCTTGTTTGCCGGAAACAGTATTTAGGATCGATAAATGGTGATAATCAAAATACAATTTCCAACTTGACTTTCCGTGGGATTCCAGTTGAAGATCTCTGCTTGGATTTTACAGTTCCTGGTTATCCAGACTACGTTTTGAGACCAGGAGATGAAACTGTTAATATTCATAACTTGGAGGAGTATATATCCTTGGTATTAGATGCGACTGTCAAGACTGGAATAATGCGGCAAATGGAAGCATTTACTGCAGGATTCAATCAGGTATTTGACATCACAGCATTACGCATATTCATCCCTCATGAGTTGGACCATTTGCTCTGTGGCCGTAGAGAATTGTGGAAGGCCGACACACTTGTCGATCATATTAAATTTGATCATGGATACACAGCCAAGAGTCCTGCAATAGTCAATTTTCTTGAGATTATGGGCGAATTCACACCGGAACAGCAGCGAGCATTCTGCCAGTTTGTTACAGGTGCACCTAGGCTTCCACCAGGTGGCCTTGCAGTGTTGAACCCAAGATTGACTATTGTGAGAAAGCACTCATCAACTGCAACTAACACAACAAACAGCGCGACGGGGGCTTCCGAGGCAGCTGATGATGATTTACCTAGTGTCATGACATGTGCCAATTACCTTAAGCTTCCTCCATACTCGACGAAGGAATTCGTTGGATTCCCTCCGCATCCTGGGTGGTTATTGGCTGATACATACGAACAAGAAGAAGCGCAAGCCATGGCCAACGAAGAAGACGATCTCGATCTTCTCCTTTCTCTCCAAGATAAAGTCGGTGAAACTCCTCCTGGAACTCCGCCTCATACCTTAGATCTTCTATCTGACGATGAATCACCAAGACGAGCAGGTCCTGCGGATATGTCTATCTTCAGAAACGCTGTCAAAGACTGCCTTGATTATGACCATATACCAACTGAAAAAAGTGGAAAAACGAACCGGTCTAAGGCCTCTAATGATGTTTCAATCGAGAAGTTTTCTGGTTTGCGAGTGAGGAATCAACTTGTAGCACCTGCAGAACTTCGCGATCGTTTTTCTGACATTCGCTTTGTTCGTTTGTCTACCATAAAGAATCTGTTGGTTGGGGACACCCTTTCAGGCTGTTGGGTAACTGTCGGAGTGTTGACTGAGAAAGGAAGTCCAAAAACAAGCTCTACAGGGAAAGCTTACTCTATCTGGAAACTTAGTTGTTTGGATGAAAACACTGTTTCTGTTTTCTTATTTGGTGACGCTTATAAAAGAAATTGCAAGGAGCTGGCTGGAACAGTTTTTGCGCTTTTTAACTCTACAGTACGAAAGGATGCAACGGGCATGGGGTTTTCTTTAAGTGTGTATCAACCAAGCCAGTTGTTAAAGATGGGCACTTCAGATGACTATGGAGTATGCAAGGGGAAGAAGAAGGATGGGATTGCTTGTACAACAGTTATAAATAGGCGACGTGGCATATACTGTAAATATCATAAATCAAAGGCATCGGAAAAATATTCCACAACCACACGAACTGAGCTTAAAGGAGGGAATCTGAGGACTGCATTCAGAGATTATCATCTCAAGCCAGAAGGAGTTTACATGGTAGATCCGCTAGCTCGTAAAGTGACTTCTAAGAAGCCAGCACAGCCGGTAAAACTGTTGTCTGTGGAAGGCCTGAAAAGGGCATTGAGCAATGCAGATAAAGTGACCACCAATGCACACTCACAAGGGAAAAGATTCCTTGCTGAGATCACAGGGAAACTTACTAGGAAAAGTGTAAATAAAGAATTAGCCAAACAAAGTCAGCAGAAGAGCAGTTCAGAGAAAACGTCAATTTTGAAGTCATCTACCATGAAACTGGATTCAAGAGTTGAAAACCAACAACCAGATCCAAAAAGAAAGAAAACCGACCATACTCCGGTAGACAAAACCACAAAAGATACAGGGAAGATGATAGAGTTAGATTATGTTAGTTCAGATGATGATATCGACCTTATATTCACCCGATAA 6924 43.96 METRSRKRAEASSAAPSSSSSGPTTRSTKRARLSGTSPSNLAASTLSISTRSRSTRTQEPSATSTPMDSTNESSGSRRRGKNSDKENSDKGKEKEHEVRIGDRERNADQSFGLNIEGSGAGEDDDNDSEGGMGVLQQNLSTASSALQGLLRKLGAGLDDLLPSSAIASASSSQQRGRLKKILSGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISTSSTGGGQSTLGSATYTGLIRLLSTCASGSALGAKTLLLLGISGILKDILSGSGVSTNASVSPALNRPQEQIFEIVNLANELLPPLPQGTISFPPNFNLFVKGPVIKKPSTSGSVKEEDPSDSAPEVSAREKLLKDQPELLLQFGMDLLPILIQIYGSSVNGPVRHKCLSGIGKLMYFSTPEMIQSLLNVTNIASFLAGVLAWKDPHILVPALQIAEILMEKLHETFSKMFLREGVVYAVDQLILANNQNTSSQAASVEKDNNSASGTSSRTRRYRRRSGNMNSDGSSLDENKNSVSGSGVPQGSVEVPSVNSNLRTSVSSCANAFKTKYFPLDPGDVEVGVTDDLLRLKNLCVKLNAGIDDQKSKSKGKLKVSGSRLDDIITNKEEYLTGVISEMLVELGKDDGVSTFEFIGSGVVGVLLNYFSCGYFSKGRISEVELPKLRQQVLKRFKSFISVALPTSINERTVAPMAVLVQKLQSALSSLERFPVVLSHSSRSSSGSARLSSGLSVLSQPFKLRLCRAQGEKSLRDYSSNIVLIDPLASLAAVEEFLWPRVQKSESAQKPSASGANSDSGTTPPGNVAPSGLSSTPSSTTRRYSTRSRSSMTIGERAGKESSQEKSTSKGKGKAILKPAWEEKRGLQTRSSTRRRAAVDKDAQMKPVNGETTSEDEELDLSSIQIDDSLVIEDDDISDDEDDDHDDVLQDDSLPLCMPEKVHDVKLGDTVEDGDAGPATSDGQIHSTFGSSSRAATVRGSNSPDHRSGNSFSSRGGMSFAAAAMAGLGPANGRGFRGGRDPQGRPLFSGSNDNPKLLFSSGEKQLDRHLTIYQAVQRQLVLNEDDDERFAGAGSDFLSNDGSSLWGDIYTITYQRADNQTERAALAGESSSSKSKSTKCVSTSNSNSESQFHQMSLLDSILQGKLPCDFDKSNPTYDILSLLRVLEGLNQLAPRLRAQIVSDQFAEGKITTLDELGGIGGKVPHEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLHQQQGADGLGTVNEREGRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHELQRAGLGMWRSNSLQESTDSGEDGQVRKAKGGSRLTSDAAQSPLGLFPRPWPPNADSSDGSQFSKVIEYFRLVGRVMAKALQDGRLLDLPLSTAFYKLVLGQDLDLHDILSFDAELGKTLQELQALVCRKQYLGSINGDNQNTISNLTFRGIPVEDLCLDFTVPGYPDYVLRPGDETVNIHNLEEYISLVLDATVKTGIMRQMEAFTAGFNQVFDITALRIFIPHELDHLLCGRRELWKADTLVDHIKFDHGYTAKSPAIVNFLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPRLTIVRKHSSTATNTTNSATGASEAADDDLPSVMTCANYLKLPPYSTKEFVGFPPHPGWLLADTYEQEEAQAMANEEDDLDLLLSLQDKVGETPPGTPPHTLDLLSDDESPRRAGPADMSIFRNAVKDCLDYDHIPTEKSGKTNRSKASNDVSIEKFSGLRVRNQLVAPAELRDRFSDIRFVRLSTIKNLLVGDTLSGCWVTVGVLTEKGSPKTSSTGKAYSIWKLSCLDENTVSVFLFGDAYKRNCKELAGTVFALFNSTVRKDATGMGFSLSVYQPSQLLKMGTSDDYGVCKGKKKDGIACTTVINRRRGIYCKYHKSKASEKYSTTTRTELKGGNLRTAFRDYHLKPEGVYMVDPLARKVTSKKPAQPVKLLSVEGLKRALSNADKVTTNAHSQGKRFLAEITGKLTRKSVNKELAKQSQQKSSSEKTSILKSSTMKLDSRVENQQPDPKRKKTDHTPVDKTTKDTGKMIELDYVSSDDDIDLIFTR 2307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7075319 7095868 + Lsi10G004930.1 Lsi10g00493 672050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 1275 1299 - -
Lsi10g00493 2307 SUPERFAMILY ARM repeat 177 647 IPR016024 -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 1531 1579 - -
Lsi10g00493 2307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 49 1867 IPR045322 GO:0006511|GO:0061630
Lsi10g00493 2307 Pfam HECT-domain (ubiquitin-transferase) 1514 1866 IPR000569 GO:0004842
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 10 73 - -
Lsi10g00493 2307 Gene3D Hect, E3 ligase catalytic domains 1407 1648 - -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 2235 2289 - -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 511 527 - -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 1906 1931 - -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 74 106 - -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 1183 1207 - -
Lsi10g00493 2307 Gene3D - 179 660 IPR011989 -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 1 134 - -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 680 708 - -
Lsi10g00493 2307 CDD HECTc 1467 1866 IPR000569 GO:0004842
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 2263 2289 - -
Lsi10g00493 2307 Gene3D Hect, E3 ligase catalytic domain 1757 1868 - -
Lsi10g00493 2307 Gene3D - 1962 2136 IPR012340 -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 650 669 - -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 1011 1054 - -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 1133 1167 - -
Lsi10g00493 2307 SUPERFAMILY Hect, E3 ligase catalytic domain 1459 1866 IPR035983 GO:0004842
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 1066 1101 - -
Lsi10g00493 2307 SMART hect_3 1478 1885 IPR000569 GO:0004842
Lsi10g00493 2307 Pfam Primase zinc finger 2102 2144 IPR015408 GO:0005634|GO:0006260
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 1109 1123 - -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 958 1010 - -
Lsi10g00493 2307 ProSiteProfiles HECT domain profile. 1491 1866 IPR000569 GO:0004842
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 508 527 - -
Lsi10g00493 2307 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 49 1867 - -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 958 1167 - -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 2235 2262 - -
Lsi10g00493 2307 MobiDBLite consensus disorder prediction 650 708 - -
Lsi10g00493 2307 SMART arm_5 209 250 IPR000225 GO:0005515
Lsi10g00493 2307 SMART arm_5 335 373 IPR000225 GO:0005515
Lsi10g00493 2307 SMART arm_5 292 332 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01467 Lsi-Chr9:22661398 Lsi10g00493 Lsi-Chr10:7075319 2.06E-14 dispersed
Lsi10g00493 Lsi-Chr10:7075319 Lsi11g00613 Lsi-Chr11:6530706 5.77E-12 dispersed
Lsi10g00493 Lsi-Chr10:7075319 Lsi03g02055 Lsi-Chr3:31865008 8.66E-126 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00493 K10590 - csv:101218793 3307.69