Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00494 ATGAGTGTTTCCAGGTTTATTAAGTGTGTTACGGTTGGTGATGGTGCTGTTGGGAAAACTTGTATGCTTATCTCCTACACCAGCAACACTTTCCCCACGGATTACGTGCCAACTGTTTTCGACAATTTTAGCGCAAATGTGGTTGTGGATGGAAGCACAGTCAACCTAGGCTTGTGGGATACTGCTGGCCAGGAAGATTACAATAGATTGAGACCTTTGAGCTACCGTGGAGCAGATGTATTTCTGTTAGCATTCTCTCTCATAAGCAGGGCTAGCTATGAAAATGTCGCCAAAAAATGGATTCCTGAACTAAGGCATTATGCTCCTGGTGTACCAGTTATTCTCGTCGGGACTAAGCTTGGTTATATTCTTCACTACCTTTCTAGTTTTCAAGTGTTGCATTTGAAACTAGCTTTCTTTTCCCATTTGTTTGCTGATCTTCGAGAAGATAAACAGTACCTAATCGAACACCCAGGGATCGTGCCAATTACCACAGCTCAGGGGGAGGAACTGAGAAAACTCATTGGTGCCCCAGTTTACATTGAATGCAGTTCGAAAACACAGCAAAATGTGAAAGCAGTTTTCGATGCAGCAATCAAAGTGGTTCTCCAGCCTCCAAAGCGGAAGAAGCGAAAGAAGAGAAAGGCACAGAAGGCTTGTTCTATATTATGA 672 43.3 MSVSRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENVAKKWIPELRHYAPGVPVILVGTKLGYILHYLSSFQVLHLKLAFFSHLFADLREDKQYLIEHPGIVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKRKKRKKRKAQKACSIL 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7102355 7105853 + Lsi10G004940.1 Lsi10g00494 672051

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00494 223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 203 IPR027417 -
Lsi10g00494 223 SMART rab_sub_5 7 205 - -
Lsi10g00494 223 PANTHER RAC-LIKE GTP-BINDING PROTEIN 5 146 223 - -
Lsi10g00494 223 PANTHER RAC-LIKE GTP-BINDING PROTEIN 5 1 121 - -
Lsi10g00494 223 PANTHER RHO FAMILY GTPASE 1 121 IPR003578 GO:0005525|GO:0007264
Lsi10g00494 223 PANTHER RHO FAMILY GTPASE 146 223 IPR003578 GO:0005525|GO:0007264
Lsi10g00494 223 Gene3D - 5 217 IPR027417 -
Lsi10g00494 223 ProSiteProfiles small GTPase Rho family profile. 1 202 - -
Lsi10g00494 223 SMART ras_sub_4 4 205 - -
Lsi10g00494 223 SMART rho_sub_3 9 205 IPR001806 GO:0003924|GO:0005525
Lsi10g00494 223 TIGRFAM small_GTP: small GTP-binding protein domain 7 120 IPR005225 GO:0005525
Lsi10g00494 223 PRINTS Transforming protein P21 ras signature 180 202 - -
Lsi10g00494 223 PRINTS Transforming protein P21 ras signature 30 46 - -
Lsi10g00494 223 PRINTS Transforming protein P21 ras signature 109 122 - -
Lsi10g00494 223 PRINTS Transforming protein P21 ras signature 7 28 - -
Lsi10g00494 223 PRINTS Transforming protein P21 ras signature 47 69 - -
Lsi10g00494 223 ProSiteProfiles small GTPase Rab1 family profile. 2 223 - -
Lsi10g00494 223 Pfam Ras family 8 203 IPR001806 GO:0003924|GO:0005525
Lsi10g00494 223 ProSiteProfiles small GTPase Ras family profile. 2 223 IPR001806 GO:0003924|GO:0005525
Lsi10g00494 223 CDD Rop_like 6 203 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00494 K04392 RAC1; Ras-related C3 botulinum toxin substrate 1 - csv:101219263 354.369
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01872 Lsi-Chr5:25941087 Lsi10g00494 Lsi-Chr10:7102355 7.78E-62 dispersed
Lsi06g01534 Lsi-Chr6:25717515 Lsi10g00494 Lsi-Chr10:7102355 5.96E-94 dispersed
Lsi08g01305 Lsi-Chr8:21409246 Lsi10g00494 Lsi-Chr10:7102355 2.23E-107 dispersed
Lsi10g00092 Lsi-Chr10:1501452 Lsi10g00494 Lsi-Chr10:7102355 7.38E-84 dispersed
Lsi10g00494 Lsi-Chr10:7102355 Lsi11g00250 Lsi-Chr11:2550722 5.96E-87 dispersed
Lsi10g00494 Lsi-Chr10:7102355 Lsi06g00853 Lsi-Chr6:17968953 2.11E-99 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g158 . . . . . . Bma05g00366 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00494 . Chy11g00256 . . . . . . Bpe05g00288 . . Sed01g0196 Cmo02g00254 . . . . . . Cpe05g01373 Bhi10g01852 Tan05g1137 Cmetu11g1470 . Hepe08g0292 . . Cla02g01166 Cam02g1244 Cec02g1253 Cco02g1294 Clacu02g1226 Cmu02g1193 Cre02g1505 . Csa02g01391 . Cme11g00381
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000081 8 10 6 8 9 9 12 9 9 8 7 9 10 9 9 11 9 16 12 7 8 8 9 9 4 5 6 16 12 8 272
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00494 Lsi_Chr10 FPKM 83.294228 96.067337 59.26717 54.844673 18.46438 22.300549 14.820127 102.154335 108.759834 89.253708