Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g00496 | ATGGAAGATGGGGAGCTTGAATCCTCGAACCCAGAAGTGTTTTCGAGTTCGAATGCAGTTGAGCTTCCAAGCAGTTGCTCAATGGATAGCTTCTTTGATGAAATTCTGAAGGACACTCATGCTTGCACACACGCTCATACTTGCAACCCTCCTGGTCCTGATTATTCACATACACACACCTGTTTTCATGTCCATACGAAAATTGTCTCTTCCCCCACTGAAGAAAAGGTTTCCACTGATGACACAGCGGAGTCTGTGGATAAAAAGAATAAGAAGCGCCCGCTTGGTAATCGTGAAGCAGTTCGTAAATACCGGGAGAAGAAAAAGGCAAGGGCTGCATCATTGGAAGATGAAGTTGTGAGATTGAGGGCCCTGAATCAGCAGCTGTTGAAGAGATTGCAAGGTCAGGCTGCATTGGAGGCTGAGATTTCCAGGCTCAAATGTTTGCTTGTGGATATTAGGGGAAGAATTGAAGGGGAAATTGGAACCTTTCCATATCAGAAACCAGCCAATTCAAATCTGCCCAATCAAAATGTGCCTGGTAGTTACATGATAAATCCATGTAATGTGCAATGCAATGATCAAGCATATTGCCTTCATCCAGGGGATGATGGAAAAAGTGGAGAGAGCGGTTCGTTGAATGGGCAAAGTTTTAGTGTGTGTGACTTTGAAAATCTTCAGTGCTTGGCAAATCAAAACACAGGAGCAAAGGAACTTCCTGACTGTGGACTAGGGAACACAATTTCTAATGTTAATTGCTCAGAAATAAATCCGAAGAAAGTATCATGTAGATGTTGTAAAGATCTTCTTGTTGAGTTAACTGGTGCACGGTTCTGTTTTATGTTGGGATGCATAGAACTAGGAAATGGTGGGATTTCAGGACCTGAGCCATGTCAAAACACCTCAAGGAAACTTAGATCTGCCATTCAATGTGCAAGAGAACTTTGA | 948 | 42.93 | MEDGELESSNPEVFSSSNAVELPSSCSMDSFFDEILKDTHACTHAHTCNPPGPDYSHTHTCFHVHTKIVSSPTEEKVSTDDTAESVDKKNKKRPLGNREAVRKYREKKKARAASLEDEVVRLRALNQQLLKRLQGQAALEAEISRLKCLLVDIRGRIEGEIGTFPYQKPANSNLPNQNVPGSYMINPCNVQCNDQAYCLHPGDDGKSGESGSLNGQSFSVCDFENLQCLANQNTGAKELPDCGLGNTISNVNCSEINPKKVSCRCCKDLLVELTGARFCFMLGCIELGNGGISGPEPCQNTSRKLRSAIQCAREL | 315 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 7120987 | 7124254 | + | Lsi10G004960.1 | Lsi10g00496 | 672053 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g00496 | 315 | Coils | Coil | 98 | 132 | - | - | |
Lsi10g00496 | 315 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 87 | 134 | IPR004827 | GO:0003700|GO:0006355 | |
Lsi10g00496 | 315 | PANTHER | BASIC LEUCINE ZIPPER 23 | 1 | 240 | - | - | |
Lsi10g00496 | 315 | SUPERFAMILY | Leucine zipper domain | 89 | 135 | IPR046347 | GO:0003700|GO:0006355 | |
Lsi10g00496 | 315 | SMART | brlzneu | 84 | 152 | IPR004827 | GO:0003700|GO:0006355 | |
Lsi10g00496 | 315 | Pfam | Basic region leucine zipper | 87 | 142 | IPR004827 | GO:0003700|GO:0006355 | |
Lsi10g00496 | 315 | MobiDBLite | consensus disorder prediction | 77 | 96 | - | - | |
Lsi10g00496 | 315 | MobiDBLite | consensus disorder prediction | 72 | 96 | - | - | |
Lsi10g00496 | 315 | Gene3D | - | 75 | 153 | - | - | |
Lsi10g00496 | 315 | PANTHER | CCAAT/ENHANCER BINDING PROTEIN | 1 | 240 | - | - | |
Lsi10g00496 | 315 | CDD | bZIP | 91 | 144 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi10g00496 | Lsi11g01199 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi10g00496 | Lsi-Chr10:7120987 | Lsi07g00243 | Lsi-Chr7:2655897 | 3.59E-06 | dispersed | |
Lsi10g00496 | Lsi-Chr10:7120987 | Lsi11g01199 | Lsi-Chr11:20487647 | 4.25E-136 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26022 | PF07716 | bZIP_2 | 6.20E-15 | CL0018 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g00496 | K25785 | - | csv:101219501 | 504.212 |