Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00496 ATGGAAGATGGGGAGCTTGAATCCTCGAACCCAGAAGTGTTTTCGAGTTCGAATGCAGTTGAGCTTCCAAGCAGTTGCTCAATGGATAGCTTCTTTGATGAAATTCTGAAGGACACTCATGCTTGCACACACGCTCATACTTGCAACCCTCCTGGTCCTGATTATTCACATACACACACCTGTTTTCATGTCCATACGAAAATTGTCTCTTCCCCCACTGAAGAAAAGGTTTCCACTGATGACACAGCGGAGTCTGTGGATAAAAAGAATAAGAAGCGCCCGCTTGGTAATCGTGAAGCAGTTCGTAAATACCGGGAGAAGAAAAAGGCAAGGGCTGCATCATTGGAAGATGAAGTTGTGAGATTGAGGGCCCTGAATCAGCAGCTGTTGAAGAGATTGCAAGGTCAGGCTGCATTGGAGGCTGAGATTTCCAGGCTCAAATGTTTGCTTGTGGATATTAGGGGAAGAATTGAAGGGGAAATTGGAACCTTTCCATATCAGAAACCAGCCAATTCAAATCTGCCCAATCAAAATGTGCCTGGTAGTTACATGATAAATCCATGTAATGTGCAATGCAATGATCAAGCATATTGCCTTCATCCAGGGGATGATGGAAAAAGTGGAGAGAGCGGTTCGTTGAATGGGCAAAGTTTTAGTGTGTGTGACTTTGAAAATCTTCAGTGCTTGGCAAATCAAAACACAGGAGCAAAGGAACTTCCTGACTGTGGACTAGGGAACACAATTTCTAATGTTAATTGCTCAGAAATAAATCCGAAGAAAGTATCATGTAGATGTTGTAAAGATCTTCTTGTTGAGTTAACTGGTGCACGGTTCTGTTTTATGTTGGGATGCATAGAACTAGGAAATGGTGGGATTTCAGGACCTGAGCCATGTCAAAACACCTCAAGGAAACTTAGATCTGCCATTCAATGTGCAAGAGAACTTTGA 948 42.93 MEDGELESSNPEVFSSSNAVELPSSCSMDSFFDEILKDTHACTHAHTCNPPGPDYSHTHTCFHVHTKIVSSPTEEKVSTDDTAESVDKKNKKRPLGNREAVRKYREKKKARAASLEDEVVRLRALNQQLLKRLQGQAALEAEISRLKCLLVDIRGRIEGEIGTFPYQKPANSNLPNQNVPGSYMINPCNVQCNDQAYCLHPGDDGKSGESGSLNGQSFSVCDFENLQCLANQNTGAKELPDCGLGNTISNVNCSEINPKKVSCRCCKDLLVELTGARFCFMLGCIELGNGGISGPEPCQNTSRKLRSAIQCAREL 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7120987 7124254 + Lsi10G004960.1 Lsi10g00496 672053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00496 315 Coils Coil 98 132 - -
Lsi10g00496 315 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700|GO:0006355
Lsi10g00496 315 PANTHER BASIC LEUCINE ZIPPER 23 1 240 - -
Lsi10g00496 315 SUPERFAMILY Leucine zipper domain 89 135 IPR046347 GO:0003700|GO:0006355
Lsi10g00496 315 SMART brlzneu 84 152 IPR004827 GO:0003700|GO:0006355
Lsi10g00496 315 Pfam Basic region leucine zipper 87 142 IPR004827 GO:0003700|GO:0006355
Lsi10g00496 315 MobiDBLite consensus disorder prediction 77 96 - -
Lsi10g00496 315 MobiDBLite consensus disorder prediction 72 96 - -
Lsi10g00496 315 Gene3D - 75 153 - -
Lsi10g00496 315 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 240 - -
Lsi10g00496 315 CDD bZIP 91 144 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi10g00496 Lsi11g01199 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00496 Lsi-Chr10:7120987 Lsi07g00243 Lsi-Chr7:2655897 3.59E-06 dispersed
Lsi10g00496 Lsi-Chr10:7120987 Lsi11g01199 Lsi-Chr11:20487647 4.25E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26022 PF07716 bZIP_2 6.20E-15 CL0018 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00496 K25785 - csv:101219501 504.212