Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00501 ATGGCTGGTAAAGGGAATGGAGGTTTGGCTTGTACACATGCTTCTAATCCCTACCATGTTTGCTCTGAACACTGTTTCGGAAAGAAGGGTGAAAGCAAGAAGCAGATAGTTAGAAAGGATTCAGACGATGGTGCTCCAAAGTATAGTGGTGAACGCAAAAAGACAGTTCGTTCAGATTGCAGAAGTGGATCTAATCCTTACCATAACTGTGATGAATTCTGCTCCGACATAACCACTCAATCTGGTCGGCCAAAAGCAGAAAGGGATTCAGCTGTAGGTTCAGGTGGAGCAAGGAAGGATTCCCTGCCAAAATCGTCCCAAAAACTTAACGTTCCTTTGGCAAGTGCTGTTTCATCTAAACCCCTACGTGTTCCTCCAGGGGAAAAAACTTGCTTCGTTGAAGACTCTTTGACGATTGAGGAGCAAAATAAGTTCTCTAAGTTGATTCTAGTTTCTGCAAATGCCCTGAAGGTTGAGGCTGATAATCTCCAAAAGCTCCACAAAACTGACACTTCCTCAATTACTTCTGTGAAATTAAAAGAAGACATTAATTCAAGGCCTGAAATTTCTGAAATAGTTCATGATGAGGAAGAAGGTGATCATAAAACTACTTCGCCCAATATCACTAGCTTTCCTTTCCCCACCATGGCTCCTAATCATAAAGGAAATGATGAGGAAGAGGTTAAATCTGTATCATCTGAACCCTCTGTACCTGTGGGGAAGTACTACGTTAAAGCAAGTTTAGCTCCCATTCTGCAATCAATCTTCAATAAGCATGGAGACATAGCGGCTTCATGTAAATTGGAATCGATTTCGATTCGTTCTTATTATTTGGAGTGTGTGTGCTATATCATTCATGAGTTGCAGTGCACACAATTCTCTCAAAAGGTGTCTAAGTCCAAAGTTAGAGAACTCTTAGCCATCCTCAGCGATGTAGTGTCTTCAGGAATGAATGTTGGTTGGCTGCATAGTATACTCAATGATATTGCAGAAACTGTTGAATCCAGCGGCCAAAAATGGACTCTGGAGGTGGCAAAGGCAAATTGCGACCACGAGTTGGAGCTGATCAAGAAAGAACTTGAATCTCGAATGCAGGATTTGACACGAAAAGAAAAGGAAATGAACGATGCGAAGGCAAAAGTTGCCGATACCAGAGCTCGCTTGAGTGAACTCGAGTCCAAATATTTTCAGTTGAACGAGGAGATTTCATCTCTGCAGTTCAAGTGTGTTATTGGAGTAAGAGGATTTGTTGCAGAGATGTCAGATGAAGGAAGAGTACACCCTGATTGTAGAAATGCTTATAATCCTTATCATGAATGTAGCGAGTACTGCTTTAAAGTAATAGCTGAAGTCAAAGCCCGGAAGCAGAAAAATGAACCAGGTTTTTTGGCATGCTACAATTTCTTTGCAATTACCTTGAGCATCATGACTTTCTCTAATTTTCCCAATTTATCAGAAGCTGTTCAAGCTAGTCAAAGTGGTGGTTCTTCCAGTTTTGTGCCTCCTGATGAGTATGAAGATCTTCATGATGAGAAGCCTGACGAAGAAGGGCACAGTGATGGTGATATTGACAAATTTAGTGGCGAGGAGAATGTGGAAGGAGACTTCACAAAACTCACGGGGAGGAAAAAGAAATTGTTTGAAATTAGGCTTAAGATGAATGAGGCCCGAAAAGCCAATCAAACAGCAATCGCTGCTGAAAAAAAGAAAATGGAACCTCCATCAGAATCAAGAGGCATTTCTAAACAAAAGTGGCTTGAGGATCGAAAGAAGAAAATTGGGAAGCTTTTGGATGCAAATGGTTTGGATATGACAAAAGCATATATGTTAGATACACAAGAGGCAGCAGAGTCCAAATATAAGAAATGGGAGAAGGATCCAGCTCCCTATGGATGGGATGCTGCACCTTTGTTTCCCTGTGACATAAAATTATCCTATGCTGATTTTAGCTTGTGTAAAACATTGTATAATGCATACAAAAAGAGGACGAAGAATGTAAATGTGGACCTTGAGGAATATAATAAAATGAAAGAATCTGATCCTGAGTTCTACCGTGAGGCTTCAAGTCTTCAGTATGGAAAGGCACCTAAGATTTCAGAGGATAAGATTGACAATATGGTGAAAGAACTCAAGGACCGGGACGAGAAGCGAAAGTCGTTTAGCCGTAGGAGGAAGTTCCACGAAGACAAGGATATCGATTCTATCAATGACCGCAATGAGCATTTCAACAAAAAGATTGAGCGGGCCTTTGGTAGATACACTCTGGAGATCAAAAACAATCTTGAGCGAGGAACTGCCTTACCTGATTAA 2310 41.08 MAGKGNGGLACTHASNPYHVCSEHCFGKKGESKKQIVRKDSDDGAPKYSGERKKTVRSDCRSGSNPYHNCDEFCSDITTQSGRPKAERDSAVGSGGARKDSLPKSSQKLNVPLASAVSSKPLRVPPGEKTCFVEDSLTIEEQNKFSKLILVSANALKVEADNLQKLHKTDTSSITSVKLKEDINSRPEISEIVHDEEEGDHKTTSPNITSFPFPTMAPNHKGNDEEEVKSVSSEPSVPVGKYYVKASLAPILQSIFNKHGDIAASCKLESISIRSYYLECVCYIIHELQCTQFSQKVSKSKVRELLAILSDVVSSGMNVGWLHSILNDIAETVESSGQKWTLEVAKANCDHELELIKKELESRMQDLTRKEKEMNDAKAKVADTRARLSELESKYFQLNEEISSLQFKCVIGVRGFVAEMSDEGRVHPDCRNAYNPYHECSEYCFKVIAEVKARKQKNEPGFLACYNFFAITLSIMTFSNFPNLSEAVQASQSGGSSSFVPPDEYEDLHDEKPDEEGHSDGDIDKFSGEENVEGDFTKLTGRKKKLFEIRLKMNEARKANQTAIAAEKKKMEPPSESRGISKQKWLEDRKKKIGKLLDANGLDMTKAYMLDTQEAAESKYKKWEKDPAPYGWDAAPLFPCDIKLSYADFSLCKTLYNAYKKRTKNVNVDLEEYNKMKESDPEFYREASSLQYGKAPKISEDKIDNMVKELKDRDEKRKSFSRRRKFHEDKDIDSINDRNEHFNKKIERAFGRYTLEIKNNLERGTALPD 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7163006 7171668 - Lsi10G005010.1 Lsi10g00501 672058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00501 769 MobiDBLite consensus disorder prediction 28 59 - -
Lsi10g00501 769 Pfam SYF2 splicing factor 653 762 IPR013260 -
Lsi10g00501 769 Coils Coil 350 408 - -
Lsi10g00501 769 MobiDBLite consensus disorder prediction 492 529 - -
Lsi10g00501 769 PANTHER PRE-MRNA-SPLICING FACTOR SYF2 420 769 - -
Lsi10g00501 769 Pfam Arabidopsis phospholipase-like protein (PEARLI 4) 190 408 IPR007942 -
Lsi10g00501 769 MobiDBLite consensus disorder prediction 60 85 - -
Lsi10g00501 769 PANTHER GCIP-INTERACTING PROTEIN P29 420 769 IPR013260 -
Lsi10g00501 769 MobiDBLite consensus disorder prediction 28 111 - -
Lsi10g00501 769 MobiDBLite consensus disorder prediction 503 529 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00501 K12868 SYF2; pre-mRNA-splicing factor SYF2 - bhj:120089496 685.641
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00501 Lsi-Chr10:7163006 Lsi11g01208 Lsi-Chr11:20605364 4.98E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g173 . . . . . . . . . . Cma02g00265 Cma20g00746 . Car20g00648 . . . . . . . . . . . . . . . . . . . . . Lsi10g00501 . Chy11g00249 . . . . . . . . . Sed01g0188 Cmo02g00261 Cmo20g00743 . . . . Cpe16g00321 Cpe05g01367 Bhi10g01837 Tan05g1122 Cmetu11g0186 . Hepe08g0301 . . Cla02g01175 Cam02g1254 . Cco02g1302 Clacu02g1236 Cmu02g1203 Cre02g1518 . Csa02g01399 . Cme11g00374
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005153 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00501 Lsi_Chr10 FPKM 3.604358 3.874259 13.572882 14.703294 32.770039 37.448982 34.3111 13.404277 13.237575 15.33864