Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00502 ATGCTTTTTGTTGGAATTTCTCTGTGTGAAGTCTTTCTTGTTGGAGATGAAGATGGCTGGAATTCTGGCATCAATTTTGCTACATGGTCTCAATCTCACAATTTCACCAAAGGAGATTTTCTAGTTTTCAATTACTTAAAGAATGAACACAATGTGTATGAAGTTATTGAGGAGACATACAGATCATGCGATGGAAGTAATGGAGTATTGGGTGAATATGATAGTGGAAATGACAAAATTGAACTCAAAGAAGCAAGAAATTATTGGTTCATTTGTAATGTTGCTGATATTAAAACGGTGAAGTTTGAGATTCGAACTTTTGACTTAAGATTACTAATGTCTTAA 345 33.33 MLFVGISLCEVFLVGDEDGWNSGINFATWSQSHNFTKGDFLVFNYLKNEHNVYEVIEETYRSCDGSNGVLGEYDSGNDKIELKEARNYWFICNVADIKTVKFEIRTFDLRLLMS 114
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7177540 7181325 - Lsi10G005020.1 Lsi10g00502 672059

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00502 114 ProSiteProfiles Phytocyanin domain profile. 10 114 IPR003245 GO:0009055
Lsi10g00502 114 Pfam Plastocyanin-like domain 20 95 IPR003245 GO:0009055
Lsi10g00502 114 PANTHER BLUE COPPER BINDING PROTEIN-LIKE 8 103 - -
Lsi10g00502 114 CDD Phytocyanin 11 94 - -
Lsi10g00502 114 Gene3D - 9 106 IPR008972 -
Lsi10g00502 114 SUPERFAMILY Cupredoxins 10 95 IPR008972 -
Lsi10g00502 114 PANTHER BLUE COPPER PROTEIN 8 103 IPR039391 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00502 - - - csv:101221400 186.422
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00502 Lsi-Chr10:7177540 Lsi10g00159 Lsi-Chr10:2565306 5.41E-16 dispersed
Lsi10g00502 Lsi-Chr10:7177540 Lsi08g00986 Lsi-Chr8:18327551 3.30E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g175 . . . . . . . . . . . Cma20g00745 . Car20g00647 . . . . . . . . . . . . . . . . . . Cone8ag1293 . . Lsi10g00502 . Chy11g00247 . . . . Bda14g00622 Bpe15g00805 . . . Sed01g0184 . Cmo20g00742 . . . . Cpe16g00322 . Bhi10g01832 Tan05g1117 Cmetu11g1432 . Hepe08g0303 . . Cla02g01176 Cam02g1255 Cec02g1264 Cco02g1303 Clacu02g1237 Cmu02g1204 Cre02g1519 . Csa02g01401 . Cme11g00372
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013153 1 1 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00502 Lsi_Chr10 FPKM 1.744275 2.145592 0.0 0.65766 4.734176 4.981988 5.213096 3.064156 3.260563 3.193122