Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00504 ATGGAGCAACAGGATTCTGTGGACAAGGAGTCTCTAATTGGTACTTGCAATAGAGATGATGTTTCTTCAAGTGAAAATATCCACATTACAACTACAAATAATGATGAAACTAGAAGAAAAAATGAGAACACAAGCGAAAAACCTAATATTCCACATATATACAGGCAAGATATTGTAAAAAGCAAAGGTAGTGGTATGATAGGGATAGTGACCGAAGTTGCTGGTGATGCTGATTCAGATAGTGACATTACCGATGATGAAGATGAAGATGATGATGGTGAGGATGGTGGGGATGATGATGGTTGTGATGATGATGGTGGTGATGGAGAGAAAGAAGGTCACAACAAGGAAAATTATGATGATGACAGTAATGCTAAAAATTCCAATGGAGATAATTATAAGAGCCAACCTCTTCCTGATGATGAAGTTCGAGTCCTTTGGATGGATGAAAGTGAGACAACTCAGAATGTTAATGATTTAACAGTTATCGATAGGGGATTTGTACATGGTGACTTTGTTGCTGCTGTTTCTGATCCGACCGGGCAAGCAGGTGTTGTGGTAGATGTTAATATCTCTGTTGATTTGTTGGTTCCCGATGGATCAATTATGAAAGATATATCATCTAAAGACTTGAAACGTGTGAGAGATTTTACGGTGGGAGATTATGTGGTCCTTGGTCCATGGTTGGGTAGAATTGATGATGTATTGGATAATGTGACTGTGATGTTTGATGATGGCTCCAAGTGTAAAGTCACAAAGGCAGAGCCATTGCGGCTCAAACCAGTTTCTAAGAATATCCTTGAAGATGCAAACTTTCCTTACTATCCTGGTCAGCGTGTAAGGGCGACTTCAACAGTTTTTAAGAATTCTAAATGGCTTTCTGGTTTATGGAAACCTAATCGCTTGGAAGGCACTGTTACTAAAGTTACAGTTGGTTCGGTGTTCATTTATTGGATAGCATCTGCTGGATATGGACCAGATTCTTCTACCACCCCAGCCGAAGAACAGACTCCAAAGAACTTAAGATTATTAACTTGTTTCTCACATGCAAATTGGCAGTTGGGTGACTGGTGTCTTCTTCCTCCATCATTCTCCACTGGCCTGACTAAGGACCCATCACAGACAGAACTTTCTGATTCAGTGACGAACACATTAGATTCTGCACAACCGGTGGGTGCGTGTGATCCAGAGGATGCTGTGCTAGATGAATTAAGTGGGATAACTGAATCCACCGATCTTGATTCCATTAGTGCATGCGATGGAAATTATAGGAATCCTGTGTATACTAGTTTGCCTGAATCTAGTAGTTCTAGAACTCTCAAGGAGACTACCCATGAGACTTGGCCTCTACATCGCAAAAAGATTCGTAAAGTTGTCGTCAGGAGAGATAAGAAGGCCAGAAAGAAAGAGGAAAACTTTGAGAGGGCCCTTCTAATTATCAATACTAAGACAAAAGTTGATGTTGCATGGCAGGATGGCCGGACAGAACTTGGACTGGATTCGACAAGCTTGATTCCAATTGATAATCCAGGTGATCATGAATTTGTTCCGGAACAGTATGTGGTTGAGAAGGCCTCCGATAATGATGATGATGTTAGCGAAAGCAGGCGAGTTGGAGTTGTGAGAAGTGTTCATGCAAAGGAGCGAACAGCCTGTGTGAGGTGGTTAAAACCAGTCTCCAGGGCGGAGGATCCACGAGAATTTGACAAAGAAGAAATTGTTAGTGTGTATGAGCTAGAGGGGCATCCAGATTATGACTACTGTTATGGTGATGTGGTTGTTCGATTGTCCCCTGTTTCTGCTTCTGCAGAGGCAATGCCTTTGGGAATTAATACAGAGGAATTAAAGCAGCAGAGTTCAACGGACGAGATGATGAGTTGTACAGAAAAGGCTTCAGGAAGCCAGAAAATAGAAGATCCATCATGTAGTGATGATTGCATCGACTTCTCAGATCTCTCTTGGGTTGGAAATATAACTGGTCTGAAGAATGGTGATATTGAAGTTACTTGGGCTAATGGCATGGTTTCAACGGTTGGCCCTCAAGCAATTTATGTTGTTGGTCGAGATGATGATGATGAATCAATAGCTGCTGGTAGTGAAGTAAGTAATGGTGCTGCAAGTTGGGAAACAGTTGATGATGATGAAATGGATTCTGTTGAGAATGCCAAGGAGGATATTGAACTTCAGGATACTGGTGCAAATTCTGAAGAGGAAGAAAGTGAGCAGTATAATTCAGGAAGAAATCTAGCTCTTTCTGTTCCACTTGCTGCACTTCGATTTGTTACGAGATTGGCTGCTGGAATATTTTCACGAGGACCAAGAGATCCAGATTCAATGGATTTGGATTCCCACAGTGAAAGTGAGACTCAATCCTTGGAAATTCAAGCTTCAGAGGAAAAAGATTCCGGGCTTCAGTCTTGCTCTCTTAAATCCAACTCTTTTGATGCTTCTGATATGAACTCTGATTGTGGAAAAGAAGAGGATAATGTTGCTTCAGAGCCATTAGAAGTGTTAGAATCGGCAAAAGCTTCAAGCAACCTGAGGACTGCAGAATCAGATGCTTCAGCGTGCCATGAGGATGGCACCAGCAGCTTCAAAGGCTTTGATATAGCCAAAGATCCTCTGGACCATTATTTTCTTGGTACAAATGGACAAACTAACAATGGAAGGAAATGGCTCAAGAAAATCCAGCAAGATTGGAGTATCCTCCAGAATAATTTGCCAGATGGGATATATGTTCGAGTCTACGAAGACCGTATGGACCTTTTAAGAGCAGTCATTGTTGGGGCTTACGGGACCCCTTACCAAGATGGCCTCTTCTTCTTCGATTTTCACCTCCCACCAGAGTATCCTGACGTTCCACCATCAGCATATTATCATTCAGGTGGGTGGCGGATAAATCCCAATCTTTATGAGGAAGGCAAAGTCTGCCTTAGCCTTTTAAATACTTGGACTGGCAGAGGAAATGAAGTGTGGGATCCAAAATCCTCTAGCATCCTTCAAGTGTTGGTCTCGCTTCAGGGATTAGTATTGAATTCTAAACCATATTTTAATGAAGCTGGATATGACAAGCAAGTTGGAACAGCAGAAGGAGAGAAAAATTCCTTGTCGTACAATGAAAACACTTTCTTATTAAACTGCAAGACAATAATGTATCTTATGAGGAAGCCTCCCAAGGACTTTGAAGAACTCGTTAAAGAACATTTCAGGAGGCGTGGATATTTCATCCTGAAGGCCTGTGATGCATACATGAAAGGTCACTTAATTGGCTCTCTCACAGAAGATGCTTCTATAAGAGAAGAAAGTGATCCCAACTCAACTTCTGTCGGATTTAAGCTTATGCTTGCTAAGATTATTCCGAAGCTCTTCTCATCGTTGAACGAAGTCGGAGCTGATTGTCAAGATTTTAAGCATTTTCAACAGTTGTAG 3429 41.59 MEQQDSVDKESLIGTCNRDDVSSSENIHITTTNNDETRRKNENTSEKPNIPHIYRQDIVKSKGSGMIGIVTEVAGDADSDSDITDDEDEDDDGEDGGDDDGCDDDGGDGEKEGHNKENYDDDSNAKNSNGDNYKSQPLPDDEVRVLWMDESETTQNVNDLTVIDRGFVHGDFVAAVSDPTGQAGVVVDVNISVDLLVPDGSIMKDISSKDLKRVRDFTVGDYVVLGPWLGRIDDVLDNVTVMFDDGSKCKVTKAEPLRLKPVSKNILEDANFPYYPGQRVRATSTVFKNSKWLSGLWKPNRLEGTVTKVTVGSVFIYWIASAGYGPDSSTTPAEEQTPKNLRLLTCFSHANWQLGDWCLLPPSFSTGLTKDPSQTELSDSVTNTLDSAQPVGACDPEDAVLDELSGITESTDLDSISACDGNYRNPVYTSLPESSSSRTLKETTHETWPLHRKKIRKVVVRRDKKARKKEENFERALLIINTKTKVDVAWQDGRTELGLDSTSLIPIDNPGDHEFVPEQYVVEKASDNDDDVSESRRVGVVRSVHAKERTACVRWLKPVSRAEDPREFDKEEIVSVYELEGHPDYDYCYGDVVVRLSPVSASAEAMPLGINTEELKQQSSTDEMMSCTEKASGSQKIEDPSCSDDCIDFSDLSWVGNITGLKNGDIEVTWANGMVSTVGPQAIYVVGRDDDDESIAAGSEVSNGAASWETVDDDEMDSVENAKEDIELQDTGANSEEEESEQYNSGRNLALSVPLAALRFVTRLAAGIFSRGPRDPDSMDLDSHSESETQSLEIQASEEKDSGLQSCSLKSNSFDASDMNSDCGKEEDNVASEPLEVLESAKASSNLRTAESDASACHEDGTSSFKGFDIAKDPLDHYFLGTNGQTNNGRKWLKKIQQDWSILQNNLPDGIYVRVYEDRMDLLRAVIVGAYGTPYQDGLFFFDFHLPPEYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQVGTAEGEKNSLSYNENTFLLNCKTIMYLMRKPPKDFEELVKEHFRRRGYFILKACDAYMKGHLIGSLTEDASIREESDPNSTSVGFKLMLAKIIPKLFSSLNEVGADCQDFKHFQQL 1142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7184770 7196277 - Lsi10G005040.1 Lsi10g00504 672061

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00504 1142 CDD UBCc 894 1044 IPR000608 -
Lsi10g00504 1142 MobiDBLite consensus disorder prediction 788 819 - -
Lsi10g00504 1142 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 39 1141 - -
Lsi10g00504 1142 MobiDBLite consensus disorder prediction 769 830 - -
Lsi10g00504 1142 MobiDBLite consensus disorder prediction 1 15 - -
Lsi10g00504 1142 SUPERFAMILY UBC-like 875 1058 IPR016135 -
Lsi10g00504 1142 MobiDBLite consensus disorder prediction 1 139 - -
Lsi10g00504 1142 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 891 1051 IPR000608 -
Lsi10g00504 1142 MobiDBLite consensus disorder prediction 32 46 - -
Lsi10g00504 1142 MobiDBLite consensus disorder prediction 16 31 - -
Lsi10g00504 1142 SMART ubc_7 894 1051 - -
Lsi10g00504 1142 MobiDBLite consensus disorder prediction 78 106 - -
Lsi10g00504 1142 MobiDBLite consensus disorder prediction 725 746 - -
Lsi10g00504 1142 Gene3D Ubiquitin Conjugating Enzyme 856 1124 IPR016135 -
Lsi10g00504 1142 MobiDBLite consensus disorder prediction 107 124 - -
Lsi10g00504 1142 Pfam Ubiquitin-conjugating enzyme 896 1040 IPR000608 -
Lsi10g00504 1142 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 23-RELATED 39 1141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00504 K10581 UBE2O; ubiquitin-conjugating enzyme E2 O [EC:2.3.2.24] - csv:101220698 2031.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01499 Lsi-Chr9:23009989 Lsi10g00504 Lsi-Chr10:7184770 2.93E-77 dispersed
Lsi10g00504 Lsi-Chr10:7184770 Lsi04g00447 Lsi-Chr4:4299707 7.12E-10 dispersed
Lsi10g00504 Lsi-Chr10:7184770 Lsi04g01334 Lsi-Chr4:21111087 2.98E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g177 . . . . . . . . . . Cma02g00267 Cma20g00742 . Car20g00644 . . . . . . . . . . . . . . . . . Cone12ag1239 Cone8ag1294 . . Lsi10g00504 . . . . . . . . . . . . Cmo02g00263 Cmo20g00740 . . . . . Cpe05g01365 Bhi10g01829 . . . Hepe08g0305 . . Cla02g01178 Cam02g1257 Cec02g1266 Cco02g1305 Clacu02g1239 Cmu02g1206 Cre02g1521 . Csa02g01403 . Cme11g00370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005071 2 3 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00504 Lsi_Chr10 FPKM 3.75641 5.855877 25.467464 24.097385 5.038814 2.913337 2.386972 10.834185 11.510354 11.005502