Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00505 ATGACATTCTTCTGTAGAATAAACCAATCCAAGCTCAAGTACCTTTCGGATCAATTCAAGAGACATTATTTTCAATTCTCTTATCCTGCTTCGCTTGATTCCGGTCGTACTACGAAGCATGATTCTGGGTATCTAGGGCGGATAATTCCCCGCAGACCAGCTGATTTTGCCGATAATGTTAGGTTCTATGCTGCTCCGGTTCAGTTTCAAGGTAAGGCGAAGGAAGAGAAGGACACGAGTGGGCCGCGACTTAATGATCAAATTAAGGCTGATTTTGTGAGGCTTGTACATGATGATGGACATACAATTCTTTCGCTACATGAAGCTCTTGAACGTGCTCGTGATCTCAAGCTTGATTTGGTTGAGGTTCAACAAAAAGCCAATCCACCTGTGTGTAAAATTATGGACTTCCACAGAGAGAAGTACAAACAGCAAATAAGGGAAAAGGATCGTGTTAAAAGCAAGGAAAACCTGTTAGTAGTATCTGAAGTGAGTTTAAAAACGGGAGATCACAAAGAAGTCCGCTTCACTGGGAAAACTGAGGAGAAGGACTTAAGGATGAAAGCTGATATGGTAAAGCGATTGATGGAACGTGGGTACCGTGTGAAGTGTAGTGCCAAGGGTCGTGAGAATGAGGACTTGGGTGACTTGTTATCTCGTCTCTCTGCTTTGATTGAGGATGTGGCAGTGGTGGAAAGTGGACCAAGGGTGGATAAAGGGCAGGCATATGTTATAGTCAGGCATGTTAAATTTGGCCCCTTGAAGAAAGGGGGTGGCGGCAAAGCATTGAAAGTTGTTGAAAAAAAGAAACAGAAGGTTCAAAATGGCACCACCCCTCTGGTTTCAGCAGCCCGTTCTTCAAGCTCCGACGAAGTAGAAATGGGTCCTGAAGAATCAGAAACTGAAGATGATTTTGAGAGTTCTAAAAAGACTACCTGGTCATTTGTTGATGGTAATAAAGATTTTGACGAAGTGTTTGACTTGAAAGATGATGCCAATGGGATTCCCTCCACAGCCACTACCAAGAAAATGAATGTCGTTTCAGACAGGGATGTAAATGTCTCAGACCTTTCTAAATTAAGGCAGTTACAAGATTCTCCCATCACAGCCGATAATAGATACAAAAAGACTGCACCTACGAACCGTTTCCAACCATCAAATGTAGCAGACCGCAACAGCCGAGGTGCTAGAGATCCACTCCGATCAGAACCCGAGAATCGCGATCAGAGGAGGCACCCTCCTACAAACACAAACTTCTCACCCTCAATGAGAGAAGCCAGACGATATGATAATAATACTTCTGCATCAAGAAACAGTAATCATTCTTCAAATGAGACATCCAAGCCTGGTCCATTACAACATACCAATCCTGGTCCATCCAAAACTAGCTTTGGGATCTTCAGTTCTCTAAACTCCAATGCTCCAAGGAAGCAAGATGCACCAGCCACAAGTTATCAAGGCAATCGAGGGCCTCCATACACGCCATCGGCTAATCCTAATGCACCTGGAGCTGCAGGAAATACAAAGTTTTCGATAACGAACTCTGAAGACAATTTGAACAAGGGACAGAAAAGCTGGGGAATTTTCAGCAAGGGGAGTCCAAATGATAACCCAGACAGGATATCAAAATCTAACTAA 1638 43.59 MTFFCRINQSKLKYLSDQFKRHYFQFSYPASLDSGRTTKHDSGYLGRIIPRRPADFADNVRFYAAPVQFQGKAKEEKDTSGPRLNDQIKADFVRLVHDDGHTILSLHEALERARDLKLDLVEVQQKANPPVCKIMDFHREKYKQQIREKDRVKSKENLLVVSEVSLKTGDHKEVRFTGKTEEKDLRMKADMVKRLMERGYRVKCSAKGRENEDLGDLLSRLSALIEDVAVVESGPRVDKGQAYVIVRHVKFGPLKKGGGGKALKVVEKKKQKVQNGTTPLVSAARSSSSDEVEMGPEESETEDDFESSKKTTWSFVDGNKDFDEVFDLKDDANGIPSTATTKKMNVVSDRDVNVSDLSKLRQLQDSPITADNRYKKTAPTNRFQPSNVADRNSRGARDPLRSEPENRDQRRHPPTNTNFSPSMREARRYDNNTSASRNSNHSSNETSKPGPLQHTNPGPSKTSFGIFSSLNSNAPRKQDAPATSYQGNRGPPYTPSANPNAPGAAGNTKFSITNSEDNLNKGQKSWGIFSKGSPNDNPDRISKSN 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7199511 7205260 - Lsi10G005050.1 Lsi10g00505 672062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00505 545 SUPERFAMILY Translation initiation factor IF3, N-terminal domain 81 151 IPR036787 GO:0003743|GO:0006413
Lsi10g00505 545 TIGRFAM infC: translation initiation factor IF-3 84 245 IPR001288 GO:0003743|GO:0006413
Lsi10g00505 545 Coils Coil 106 126 - -
Lsi10g00505 545 Gene3D - 75 150 IPR036787 GO:0003743|GO:0006413
Lsi10g00505 545 PANTHER TRANSLATION INITIATION FACTOR IF-3 1 532 IPR001288 GO:0003743|GO:0006413
Lsi10g00505 545 Pfam Translation initiation factor IF-3, N-terminal domain 84 150 IPR019814 GO:0003743|GO:0006413
Lsi10g00505 545 MobiDBLite consensus disorder prediction 272 289 - -
Lsi10g00505 545 MobiDBLite consensus disorder prediction 363 545 - -
Lsi10g00505 545 Coils Coil 135 155 - -
Lsi10g00505 545 Gene3D - 164 251 IPR036788 GO:0006413
Lsi10g00505 545 MobiDBLite consensus disorder prediction 363 391 - -
Lsi10g00505 545 PANTHER TRANSLATION INITIATION FACTOR IF3-1, MITOCHONDRIAL 1 532 - -
Lsi10g00505 545 MobiDBLite consensus disorder prediction 413 545 - -
Lsi10g00505 545 MobiDBLite consensus disorder prediction 267 310 - -
Lsi10g00505 545 MobiDBLite consensus disorder prediction 394 412 - -
Lsi10g00505 545 SUPERFAMILY Translation initiation factor IF3, C-terminal domain 171 250 IPR036788 GO:0006413
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00505 K02520 infC, MTIF3; translation initiation factor IF-3 - csv:101207030 599.356
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g185 . . . . . . . . . . Cma02g00268 Cma20g00741 . Car20g00643 . . . . . . . . . . . . . . . . . . Cone8ag1299 . . Lsi10g00505 . Chy11g00245 . . . . . . . . . Sed01g0181 Cmo02g00265 Cmo20g00739 . . . . Cpe16g00324 Cpe05g01364 Bhi10g01827 Tan05g1113 Cmetu11g1096 . Hepe08g0306 . . Cla02g01179 Cam02g1258 Cec02g1267 Cco02g1307 Clacu02g1240 Cmu02g1207 Cre02g1522 . Csa02g01404 . Cme11g01081
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011500 0 1 0 0 0 1 2 1 1 0 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00505 Lsi_Chr10 FPKM 0.0 0.0 2.332165 0.910115 0.0 0.0 0.0 1.098176 1.320818 2.014889