Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi10g00506 | ATGTTCTCAGAGTTGATGAACTTTCTGAGAGCTTGTTTTCGACCGAGGTCGGATCGACATGTGCACAAAGGTTCCGATGCTGGTGGTCGACAGGATGGTCTCCTATGGTACAAAGATAGTGGGCAGCATGCCAATGGTGAGTTTTCAATGGCTGTAGTTCAGGCTAACAATTTACTTGAGGATCAAAGTCAGATGGAGTCAGGCAATTTGAGCTTGCATGAGGCCGGGCCATATGGTACCTTTGTTGGGGTGTATGATGGGCATGGAGGGCCCGAGACATCTCGTTATGTAAATGATCACCTTTTCCAGCATCTTAAAAGGTTTACTTCAGAGCAACAATCTATGTCAGTGGATGTCATACGAAAGGCATTTCAAGCCACCGAAGAGGGGGTCATTGCTCAAGTTTCGAAGCAATGGTCAATGAGGCCACAAATTGCAGCTGTTGGTTCTTGCTGCCTTGTCGGTGTAATTTGTGGTGGAACCCTTTACATTGCTAACCTTGGTGATTCACGAGCTGTTTTAGGGAGACTTGTAAAGGCAACAGGGGAAGTTTTGTCTGTTCAGTTATCGGCTGAGCATAATGCATCTATAGAGTCTGTGAGGCAGGAGCTCCGTGCCCTGCATCCTGATGATCCACATATTGTAGTCTTGAAGCATAATGTATGGCGCGTGAAGGGCCTTATACAGGTTTCTCGATCTATTGGTGATGTCTATTTAAAGAGAGCTGAGTTCAACCGAGAGCCTCTTTATGCTAAGTTCCGCCTTCGTGAACCTATCAAAAAGCCCATACTGAGCGCCGAACCATCTATTTCTGTGCTCCAATTGCAGCCACAGGATCAATTTATTATATTTGCTTCAGATGGGCTCTGGGAACACCTTAGCAATCAGGAAGCTGTTGATATTGTCCAAAACCATCCACGTAATGGAAGTGCAAGGAGGCTGGTGAAAGCAGCACTGCAAGAGGCAGCAAAGAAGAGAGAAATGAGGTACTCTGATTTGAAGAAGATTGACCGTGGCGTACGGCGACATTTCCACGATGACATCACAGTGATTGTTGTGTTTCTCGACTCAAACCTCGTGAGCCGGGCTAGCTCTACAAAATGTGCAAGCCTATCCGTGCGAGGGGGTGGAGTTAACTTACGTCCAAACTCATTGGCCCCTTGCACCACACCATCAGACACTGGCATGGCCTGA | 1194 | 47.07 | MFSELMNFLRACFRPRSDRHVHKGSDAGGRQDGLLWYKDSGQHANGEFSMAVVQANNLLEDQSQMESGNLSLHEAGPYGTFVGVYDGHGGPETSRYVNDHLFQHLKRFTSEQQSMSVDVIRKAFQATEEGVIAQVSKQWSMRPQIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRLVKATGEVLSVQLSAEHNASIESVRQELRALHPDDPHIVVLKHNVWRVKGLIQVSRSIGDVYLKRAEFNREPLYAKFRLREPIKKPILSAEPSISVLQLQPQDQFIIFASDGLWEHLSNQEAVDIVQNHPRNGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNLVSRASSTKCASLSVRGGGVNLRPNSLAPCTTPSDTGMA | 397 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 7237062 | 7243302 | + | Lsi10G005060.1 | Lsi10g00506 | 672063 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi10g00506 | 397 | ProSitePatterns | PPM-type phosphatase domain signature. | 81 | 89 | IPR000222 | GO:0043169 | |
| Lsi10g00506 | 397 | SMART | PP2C_4 | 39 | 353 | IPR001932 | - | |
| Lsi10g00506 | 397 | PANTHER | PROTEIN PHOSPHATASE 2C FAMILY PROTEIN | 5 | 387 | - | - | |
| Lsi10g00506 | 397 | Pfam | Protein phosphatase 2C | 79 | 324 | IPR001932 | - | |
| Lsi10g00506 | 397 | Gene3D | - | 36 | 367 | IPR036457 | - | |
| Lsi10g00506 | 397 | CDD | PP2Cc | 48 | 355 | IPR001932 | - | |
| Lsi10g00506 | 397 | ProSiteProfiles | PPM-type phosphatase domain profile. | 47 | 355 | IPR001932 | - | |
| Lsi10g00506 | 397 | SUPERFAMILY | PP2C-like | 59 | 356 | IPR036457 | - | |
| Lsi10g00506 | 397 | PANTHER | ALPHABET, ISOFORM E-RELATED | 5 | 387 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Lsi10g00506 | Lsi11g01215 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi03g02069 | Lsi-Chr3:32001668 | Lsi10g00506 | Lsi-Chr10:7237062 | 0 | dispersed | |
| Lsi04g00830 | Lsi-Chr4:8009578 | Lsi10g00506 | Lsi-Chr10:7237062 | 0 | dispersed | |
| Lsi07g01082 | Lsi-Chr7:16190074 | Lsi10g00506 | Lsi-Chr10:7237062 | 0 | dispersed | |
| Lsi03g00563 | Lsi-Chr3:6806984 | Lsi10g00506 | Lsi-Chr10:7237062 | 1.11E-143 | transposed | |
| Lsi03g01736 | Lsi-Chr3:28745448 | Lsi10g00506 | Lsi-Chr10:7237062 | 4.83E-57 | transposed | |
| Lsi09g01500 | Lsi-Chr9:23028473 | Lsi10g00506 | Lsi-Chr10:7237062 | 6.81E-159 | transposed | |
| Lsi01g00567 | Lsi-Chr1:4537651 | Lsi10g00506 | Lsi-Chr10:7237062 | 0 | wgd | |
| Lsi10g00506 | Lsi-Chr10:7237062 | Lsi11g01215 | Lsi-Chr11:20727281 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi10g00506 | - | K01102 | csv:101221640 | 789.645 |