Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00507 GAACAAGAAGAAGCTGTTGCTGCTGCTTTAGCTTTGGCCAACAAAGAAATGGGTTGTGTTGCCTCAAAGTTAGAGGAAGAAGAAGAAGTAGTTTCCATTTGTAGAGAAAGAAAACGCCAATTAAAGTTAGCTGTTGAGAGAAGGTATGCTCTTGCAGAGGCACATTGTAAATATTGTCAAGCTTTATATGCTGTTTCAGCTGCCATTAAGCTCTTTGTAGCTCGCCATTCTTCTCCTTCTCCTTTCCTTATTACATTCCCTCCTCCATGTTCTCCTTCTCCTCCCTCTTCAGAAAAAGTCATAACCAATCCAATGTTTCTTCAGCAAATGCCTTCTGATTCCACCCATGAAACCATACCTGCTTGCCCTTCATGTCTTTCTCCTTCTTCTTCTTCAACCTCTACAGAATCCTCCATGGAAGAAAGAGAAGAAGAATCAGTAGAGGAGGAGAGGATTGAACAAGTCCCTCCATATTTCTACATGCAAATGCCACCCCCAATGCCATCCCCTCAGAGGGAGTTTGGATGGGATTTCTTCAATCCATTCGACACAATGAGGACCGATGTCGTCGGCGAATATCGCGAGGACGAGCTCAGGATGGTGAGGGAGGAAGAAGGCATTCCAGAGCTGGAAGAGGCTGAGGTAGAGAAAGAAGAGCAAAACCAGAGAGTTGTGGCTGTTGTTGAGGAGGAAGATGTTGGAGCTTTTGAAGAGCAGAAGAATGGGGTTGAAATGGTTAAAGTTGGAGAGAAGGAAGATGAGGGTCAAATGAAGCAGAAAGGGCTAACAGTCATTGATACACCAGTGGAAGGAAGGGAACTTTTGGAAGCATTGCAAGATGTTGAGGATTATTTCATTAGGGCTTATGATTCTGGAATTGATGTTTCTAGGATGTTAGAGGCCAACAAAATTCAGCTTCAGTCTGGTTTAGAAGAAATAAAAGGTGGGCCATTCATATATCTTCATTTGCTTCATTCATTAACCTCTCAAAATTTGATTATTGTATCTGCTAATGTGAATTGTTCAAACCTTATAATGAATGTTCTCATCTTAAGCTCTGTGAGATTTGTAACAAGTACAGACATTCATGGCTTAAAGTTAATGATATCTCTCTTTAAACAAGCTCATTTTACTGCAGAGAACTCGACAAAGCTCATCCAAGCGATAACTTGGCACCGGTCTGCTTCAGGCAAGCCTTCATCATGTAAGAGTCTAGTGGCATCAAGTTCGAAAGGTTCTTCGGCATGGACAGAGTTTAAGAATGAGCTGTTTGATGATTACGACGTAATGGACTCAGGAAGCCATTCATCGACTCTCGGACGATTATATGCTTGGGAGAAGAAACTCTACGAAGAGGTCAAGGGCAAGATTATTAAACATGTTACAGTTAGGATAGAAAATAAGAACACATCATTTTCTACATTATGTCTTATTGAGACTCTTGTTAGTCCAGCCAAATTTGAAGATCATGTAGATTGTCTTATGGATTTATCTTCATCATGTGTTGGTAAATTGTCGACTTCAAACTTTGTGATTCTTCCTAATGTGCTGTGGGCTGGGGACAGCATGCGCAAACTGTACGAGAAAAGGTGTTCACGACTAAGAAACCAGGACGTTAAAGGGGACAGTGGAGTTACTACCGATAAAACTCGAGTTGCAGTAAAAGATTTATATGCCAGGATCTTGGTCGCCATTCGGAGTGCTGAATCGATCTCGATGAGAATTGAGAAATTAAGAGACGACGAGCTACAGCCTCAGATCGTTGAGCTATTAAAAGGCTTAACAAGAACATGGAAAATCATGTTGGAAGTTCATGAAACCCAGAAAAAGATTATCCTTGAAGTGAAAACTTATTCCTGCCATTCCTATCTGAAGTTCTGTAACGAATCTCATCGTCTTGCAACTCTTCAGCTTGGGGCCGAGCTTCAGAATTGGCGTTCGTGTTTTTCAAAATATGTTGAATCACAAAAGGCTTATGTTGAAGCTCTCCATGGATGGCTGACCAAGTTTGTAGTTCCTGAGGTTGAGTTCTATTCTCGGGGTCGAATGTCGGCTGTGCCTTATGGGCTGCATGGACCTCCATTGCTTTCAATCTGCCATGATTGGCTATCTTCCATGGAAAAGTTACCTGATAAACCAGTAGCCTTTGCATTGAAAAGCTTTGCAAAGGATATGAAAGCTCTATCAGATAAACAGATGGAGGAGCAGCACCAAAAGAGAAGAGTTGAAAGTCTCGGAAAGGAACTCGACCGAAGGATCCTGTCATTCCAGAAAACAGAGAACAAGTTCTTCGATTTCAACTTTACCGAGACGAAATCAGAGCTGGAAGTCGAAAATCAGAATGAGTACTTAACAGAAAAGAAAGATCAGCTGGACATGTTCAGGAAGAAGCTTGATTTGGAGAAGGAAAAACACAATAACTGCATTCAAGAAGCAGAAAGGATTACATTAAATGGAATCCAAACAGGGTTTTCTGCAGTTTTTGAATCCTTATCAGAATTCTCCAAAGCTTCCCAAAAAATGTATGACCACCTCGTGAATTACAGTGAGAATGCCAATAAATCTGAAAACATAAACTATATCGAGGGCTCCTCCCAAACTGAAGAAAATGTTAGCAGATAA 2622 41.19 EQEEAVAAALALANKEMGCVASKLEEEEEVVSICRERKRQLKLAVERRYALAEAHCKYCQALYAVSAAIKLFVARHSSPSPFLITFPPPCSPSPPSSEKVITNPMFLQQMPSDSTHETIPACPSCLSPSSSSTSTESSMEEREEESVEEERIEQVPPYFYMQMPPPMPSPQREFGWDFFNPFDTMRTDVVGEYREDELRMVREEEGIPELEEAEVEKEEQNQRVVAVVEEEDVGAFEEQKNGVEMVKVGEKEDEGQMKQKGLTVIDTPVEGRELLEALQDVEDYFIRAYDSGIDVSRMLEANKIQLQSGLEEIKGGPFIYLHLLHSLTSQNLIIVSANVNCSNLIMNVLILSSVRFVTSTDIHGLKLMISLFKQAHFTAENSTKLIQAITWHRSASGKPSSCKSLVASSSKGSSAWTEFKNELFDDYDVMDSGSHSSTLGRLYAWEKKLYEEVKGKIIKHVTVRIENKNTSFSTLCLIETLVSPAKFEDHVDCLMDLSSSCVGKLSTSNFVILPNVLWAGDSMRKLYEKRCSRLRNQDVKGDSGVTTDKTRVAVKDLYARILVAIRSAESISMRIEKLRDDELQPQIVELLKGLTRTWKIMLEVHETQKKIILEVKTYSCHSYLKFCNESHRLATLQLGAELQNWRSCFSKYVESQKAYVEALHGWLTKFVVPEVEFYSRGRMSAVPYGLHGPPLLSICHDWLSSMEKLPDKPVAFALKSFAKDMKALSDKQMEEQHQKRRVESLGKELDRRILSFQKTENKFFDFNFTETKSELEVENQNEYLTEKKDQLDMFRKKLDLEKEKHNNCIQEAERITLNGIQTGFSAVFESLSEFSKASQKMYDHLVNYSENANKSENINYIEGSSQTEENVSR 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7246929 7250240 + Lsi10G005070.1 Lsi10g00507 672064

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00507 873 Pfam Protein of unknown function (DUF632) 274 726 IPR006867 -
Lsi10g00507 873 Coils Coil 210 230 - -
Lsi10g00507 873 MobiDBLite consensus disorder prediction 111 136 - -
Lsi10g00507 873 PANTHER UNCHARACTERIZED 519 857 - -
Lsi10g00507 873 PANTHER UNCHARACTERIZED 17 462 - -
Lsi10g00507 873 Pfam Protein of unknown function (DUF630) 17 76 IPR006868 -
Lsi10g00507 873 MobiDBLite consensus disorder prediction 111 151 - -
Lsi10g00507 873 Coils Coil 784 815 - -
Lsi10g00507 873 PANTHER OS09G0542500 PROTEIN 519 857 - -
Lsi10g00507 873 PANTHER OS09G0542500 PROTEIN 17 462 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00507 - - - mcha:111011119 915.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00507 Lsi-Chr10:7246929 Lsi11g00777 Lsi-Chr11:8914729 1.23E-12 dispersed
Lsi10g00507 Lsi-Chr10:7246929 Lsi02g02785 Lsi-Chr2:34100079 1.46E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g188 . . Bda06g00474 Bda08g00983 . . . . . . Cma02g00270 Cma20g00739 . Car20g00641 . . . . . . . . . . . . . . . . . . . . . Lsi10g00507 . Chy11g00243 . . . . . . . . . . Cmo02g00267 Cmo20g00736 . . . . Cpe16g00326 Cpe05g01362 . . . . . . . Cla02g01182 Cam02g1259 Cec02g1270 Cco02g1308 Clacu02g1241 Cmu02g1208 Cre02g1523 . Csa02g01406 . Cme11g00366
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007141 2 2 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00507 Lsi_Chr10 FPKM 10.741506 12.201175 10.971305 11.750324 14.561676 16.217192 14.831886 11.395576 12.662722 12.593884