Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00510 ATGGCGGCGAGTGCATCTTGGCATCCCCAGGAAAATGGGTTCAACGAGATCTGTGGTTTGCTGGAGCAGCAAATTTCTCCTTCTTCGAATCCTGATAAGTCCCAGATTTGGCAGCAACTTCAGCAATACTCTCAGTTCCCTGACTTCAATAATTACCTCGCTTTTATTCTTGCACGAGCCGAGGGTAAATCAGTTGAGGTTCGACAAGCTGCTGGCTTGCTTTTAAAAAACAACCTTAGAACTGCATACAAGTCGATGACTCCTGCCTTTCAGCAATATATTAAATCTGAATTGTTGCCATGTATGGGAGCTGCAGACAGACATATTAGGTCTACAGTCGGGACCATCATCAGTGTCGTTGTTCAACTAGGAGGAATATTGGGGTGGCCTGAGTTGTTGCAAGCACTTGTAAGATGCTTAGACAGTAAAGACCAGAATCACATGGAAGGAGCTATGGATGCTTTGTCCAAGATTTGTGAAGATATACCTCAAGTGCTTGACTCAGATGTACCTGGATTGTCTGAACGCCCAATCAACATATTTTTTCCTAGATTATTTCAGTTTTTTCAGTCGCCACATGCTACATTGAGAAAACTTTCTTTGAGTTCTGTGAATCAATACATTATGCTGATGCCCACTGCGCTATATATATCCATGGACCAGTATCTTCAAGGTTTATTTGTTCTTGCTAATGACTCTACGTCAGAAGTGCGAAAGCTGCCACACCTGCGGAATGTGATTGAATACATGTTGCAAGTCAATAAGGATGCCGACGAAGAAGTTTCACTTGAAGCCTGTGAATTTTGGTCTGCATATTGTGATGCCCAATTACCTCCTGAGAACTTAAGAGAGTTCTTGCCACGTTTAATTCCAGCATTATTGTCAAATATGGTTTATGCTGATGACGACGAATCACTTCTTGAGGCTGAGGAAGATGGATCTCTTCCAGACCGAGAGCAGGATCTAAAACCCCGTTTCCATTCATCAAGGTTACATGGGTCAGATAATGCAGAAGATGATGATGATGACATTGTAAATATATGGAACTTGCGGAAATGCAGTGCTGCAGCTCTTGATATTCTCTCAAATGTGTTTGGGGATGAAATTCTTCCTATGTTGATGCCCATTGTTCAGGTCAATTTGTCTGCTAATGGTGATGAAGCCTGGAAAGAAAGGGAAGCTGCTGTATTGGCTCTTGGTGCTATAGCTGAAGGTTGCATTAGTGGACTTTATCCTCATCTGCCTGAGATTGTTACATTTCTCATTCCTCTTTTAGACGACAAATTTCCTCTAATAAGGAGTATATCTTGTTGGACACTTTCTCGTTTCAGCAAGTTCATTGTGCAGGGCATTGGAAATCAGAAAGGTTATGAACAATTTGATAAGGTTCTCATGGGACTTCTACGAAGATTATTGGACAACAACAAGAGGGTGCAAGAAGCTGCTTGTTCTGCTTTTGCAACGCTGGAGGAGGAAGCTGCCGAGGAGTTGGCGCCACATTTGAAAAATATATTACAGCACCTAATATGTGCTTTTGGAAAATATCAGAGACGGAATCTACGTATAGTGTATGATGCTATTGGAACCTTAGCAGATGCTGTTGGAGGGGAGCTAAATCAGCCTGTTTATCTTGATATTCTCATGCCACCATTAATTGCCAAATGGCAACAACTTTCGAACTCAGACAAAGATCTTTTCCCACTGTTGGAGTGCTTCACATCTATAGCACAGGCTTTGGGGACTGGATTTGCCCAATTTGCTCAGCCTGTGTATCAGAGATGCATAAGCATCATCCAGACCCAACAAATGGCAAAGGTGGTTAAGCTTTATCTCATATTTGCGCTTGGGGTTGATCCTGTTTCTGCTGGGGTTCAGTATGATAAAGAGTTCATTGTGTGCTGTCTTGATCTTCTTTCAGGACTCGCAGAAGGTCTTGGCAGTGGAATTGAAAGCTTGGTTTCTCAAAGCAATCTGAGGGACTTGCTCTTGCAATGTTGCATGGATGAAGCTTCTGATGTCCGACAGAGTGCCTTTGCATTGCTTGGGGATCTTGGAAGAGTATGCCACGTCCATTTGCAACCGCGTTTATCAGAATTTCTTACCGCTGCAGCAAAGCAATTGGATACTCCTAAGCTGAAGGAAATTGTTTCTGTGGCAAACAATGCCTGCTGGGCAATTGGAGAATTAGCTGTTAAGGTACACCAAGAAATTTCTCCTGTCGTTATGACAGTGATTTCAAGCTTGGTCCCGATTCTTCAACATGCACAGGAGCTAAATAAATCTCTGGTAGAAAACAGTGCAATTACACTTGGAAGGATTGCATGGGTGTGTCCTCAGCTAGTGTCACCACATATGGAACATTTCATGCAACCATGGTGCACTGCTTTATCCATGATACGTGATGATGTAGAAAAAGAGGATGCTTTCCGAGGTCTTTGTGCTCTGGCTAAATCAAATCCATCAGGGGCACTAAATTCACTTGCTTATATGTGCAAAGCTATTGCCAGTTGGCATGAAATAAGGAGTCAAGATCTTCATAATGAAGTATGCCAGGTTCTGCATGGTTATAAGCAGGTTGACTTGGTTGAGACAGCACTTGAAATGCAGCCAGCTGAATCTGGATTCATTCGTTATATCGATTTTGGGGTGACGGTTTGCCTTACAGAAGTCATATAG 2676 42.64 MAASASWHPQENGFNEICGLLEQQISPSSNPDKSQIWQQLQQYSQFPDFNNYLAFILARAEGKSVEVRQAAGLLLKNNLRTAYKSMTPAFQQYIKSELLPCMGAADRHIRSTVGTIISVVVQLGGILGWPELLQALVRCLDSKDQNHMEGAMDALSKICEDIPQVLDSDVPGLSERPINIFFPRLFQFFQSPHATLRKLSLSSVNQYIMLMPTALYISMDQYLQGLFVLANDSTSEVRKLPHLRNVIEYMLQVNKDADEEVSLEACEFWSAYCDAQLPPENLREFLPRLIPALLSNMVYADDDESLLEAEEDGSLPDREQDLKPRFHSSRLHGSDNAEDDDDDIVNIWNLRKCSAAALDILSNVFGDEILPMLMPIVQVNLSANGDEAWKEREAAVLALGAIAEGCISGLYPHLPEIVTFLIPLLDDKFPLIRSISCWTLSRFSKFIVQGIGNQKGYEQFDKVLMGLLRRLLDNNKRVQEAACSAFATLEEEAAEELAPHLKNILQHLICAFGKYQRRNLRIVYDAIGTLADAVGGELNQPVYLDILMPPLIAKWQQLSNSDKDLFPLLECFTSIAQALGTGFAQFAQPVYQRCISIIQTQQMAKVVKLYLIFALGVDPVSAGVQYDKEFIVCCLDLLSGLAEGLGSGIESLVSQSNLRDLLLQCCMDEASDVRQSAFALLGDLGRVCHVHLQPRLSEFLTAAAKQLDTPKLKEIVSVANNACWAIGELAVKVHQEISPVVMTVISSLVPILQHAQELNKSLVENSAITLGRIAWVCPQLVSPHMEHFMQPWCTALSMIRDDVEKEDAFRGLCALAKSNPSGALNSLAYMCKAIASWHEIRSQDLHNEVCQVLHGYKQVDLVETALEMQPAESGFIRYIDFGVTVCLTEVI 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7271485 7287975 + Lsi10G005100.1 Lsi10g00510 672067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00510 891 Pfam Importin-beta N-terminal domain 37 103 IPR001494 GO:0006886|GO:0031267
Lsi10g00510 891 ProSiteProfiles Importin-beta N-terminal domain profile. 36 104 IPR001494 GO:0006886|GO:0031267
Lsi10g00510 891 SUPERFAMILY ARM repeat 7 858 IPR016024 -
Lsi10g00510 891 MobiDBLite consensus disorder prediction 309 337 - -
Lsi10g00510 891 MobiDBLite consensus disorder prediction 311 337 - -
Lsi10g00510 891 Pfam HEAT repeat 660 688 IPR000357 GO:0005515
Lsi10g00510 891 Pfam HEAT-like repeat 389 442 - -
Lsi10g00510 891 SMART IBN_N_2 36 104 IPR001494 GO:0006886|GO:0031267
Lsi10g00510 891 PANTHER TRANSPORTIN 1 ISOFORM 1 7 859 - -
Lsi10g00510 891 PANTHER IMPORTIN BETA 7 859 IPR040122 GO:0006606
Lsi10g00510 891 Gene3D - 3 869 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00510 K18752 TNPO1, IPO2, KPNB2; transportin-1 - csv:101222100 1586.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00014 Lsi-Chr9:120350 Lsi10g00510 Lsi-Chr10:7271485 5.85E-22 dispersed
Lsi09g00016 Lsi-Chr9:136983 Lsi10g00510 Lsi-Chr10:7271485 1.84E-23 dispersed
Lsi10g00510 Lsi-Chr10:7271485 Lsi10g00925 Lsi-Chr10:13712587 1.61E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g205 . Blo15g00387 Bda06g00473 Bda08g00980 Bpe07g00709 . . . . . Cma02g00273 Cma20g00736 . Car20g00638 . . . . . . . . . . . . . . . . . . . Cone3ag0971 Cone10ag1175 Lsi10g00510 . Chy11g00239 . . . . . . Bpe05g00300 . . . Cmo02g00270 Cmo20g00733 . . . . Cpe16g00330 Cpe05g01359 Bhi10g01809 . . . . . . Cla02g01185 Cam02g1263 Cec02g1274 Cco02g1311 Clacu02g1246 Cmu02g1212 Cre02g1527 . Csa02g01409 . Cme11g00361
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005972 1 2 3 0 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 2 1 1 0 1 1 1 2 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00510 Lsi_Chr10 FPKM 1.958684 1.592812 50.546993 49.246834 0.667616 0.783017 1.052839 1.801692 1.250149 0.520727