Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi10g00514 | ATGAGAGCTCATCGTTTGAGCTTCTTCATTTCGTTTCTATCTATATTCGCTACATTCATCACAGCCACAGGGTTAACGCTTCTCAACGATTCCGGCATTTCCTACAGGAGAATTCTGCATCAGCCCCTCTTTCCGGTAGCCTCTGAGCCGCCGCCTGACATTGACTTGTCTCCACCGCCGCCACCACCGCCGGATTCTCCGTCTGATGATCAGCCGTTTTTCCATGAGCTGCCGACGAGTCCAGATCAGAGTCAACCATCTCCTACGTCATCTAATGGAACTATGCCAATCCCGGCCTCTACGGCGCAACCGTCCAAGCCTACCAAGACTGTCGCGATTGCCATTTCGGTTGGGATTGTGACTTTGGGGATGCTTTCAGCTCTTGCTTTCTTTTTGTATCGTCACCGCGCGAAGCATCCGGGGGAGTCACAGAAGCTTGTTGGAGGGAATAATCCGGAGAGATTTGTGGAGGATTCGAGAGCGCCGCCCTCGAGTTTTTTCTATATCGGAACTGTTGAGCCGACTCAGAGCTCTATTGTGGAGCAGAATGGTGCTAATGGTGCTAACAGTTCGCCTTATCGCAAGCTGAATTCGATTAAGAGGTCGGATCGGTACCGTCCTAGTCCAGAGCTGCAGCCACTGCCGCCTCTGCCAAAGCCGCCGGTGGCTATGTCGCCTCCGGCTTTGTCGTCTTCCGATGAGGAAAGCCAGGACACGGCATTTCATACTCCGCAATGCTCGTCGATTGTCAGTCACGATGAAGGCTATTTCTCACCGGCGTCTCGTCGGAGTAATTCGGTTAAGAGCTGTTCAACGGCAAGTTTCAAGAATGACCATATGAATTCCAATCCTCCTCCCATTCCTCATTCCAAAAGAACCTCTCCTAAATCGAGATTTTCGGTTTCTTCGACGAAGCGGACTTCGTCTCAGCCTCAGCCACCGCCGCCGCCGCCTCCTCCACCGCGTCCGTTTGATGAATTTCGTGAAACTCCGAATTCGAAAGAAACAATGCCTTTCTCTTCCACGAGACCTAAATTTTCGAAGCCTCCGCCTCCGCCGAATTTGGCGCTTCTTCAAACAATTAGCAATTCAACCACATTTCCTCAAGTTCCGCAACCTGCTGTAGCTCCACCTCCACCTCCGCCGCCCCCACCTCCACCTCCACGGCCACCGGCGCGCCCGGCCTCCTATTCAACGCCACAAAAACTAGGGTTATCAGAAACCAGAATGTCGGCAGTCACTCCACCAGATTCCTCTAAGTCACAATCCTACTCAACAGCGAGATCAAACTCTTCTCCGAAATCCACACCGAGTTCTGCGACAACAAATTCTGCTAAAGAAGACGTTGTCCCGAGGATTAATTCTATGGAGAGGCTCGAAGCAGAGGACGCAGAAGGTGCAAAACCGAGATTGAAGCCCTTGCACTGGGACAAAGTACGAGCAACCTCAGACCGAGCTACAGTTTGGGATCAACTTAAATCAAGCTCATTCCAATTAAACGAGGACATGATGGAGACCCTTTTCGGCTTCAATTCTGCAAATTCTGTTCCCAAAGAGGCCACGAGAAAGTCTGTTCTTCCCCCCGTTGAGAAGGAAAACAGGGTGTTGGATCCAAAAAAGTCGCAGAACATAGCAATACTTCTAAGAGCACTTAATGTCACGCGCGATGAGGTGATCGAAGCTCTTCAAGATGGTAACCCAGAAGGCTTTGGTACTGAGCTCTTAGAAACTCTTGTAAAGATGGCTCCAACCAAAGAGGAAGAGATAAAACTCAGAGAGTACAGTGGTGATGTTTCAAAATTAGGGACTGCAGAAAGGTTTCTTAAGGCAGTGCTTGAAGTTCCATTTGCCTTTAGAAGAGTTGAGGCAATGCTGTACAGAGCCAATTTTGATTCAGAAGTAAAGTACCTAAGGAAATCATTTCAAACCCTTGAGGGTGCAAGTGAAGAATTAAAGAACAGTAGACTTTTTCTTAAACTCCTTGAAGCAGTTCTTAAGACAGGAAATAGGATGAATGTTGGTACCAATCGTGGTGATGCTAAAGCCTTTAAGCTTGAAACCCTCTTAAAATTAGTTGACATAAAGGGAACGGATGGAAAGACAACATTGCTTCATTTTGTTGTTCAAGAAATCATCAGATCAGAAGGTGGTGCTGACTCAACTAATGACAACCTTCAACCCCGTACGCAAGCCAAAATCGAGGATGAATTCAGAAAGCAGGGCTTGCAAGTTGTGGCTGGACTAAGCAGAGACCTCGCCAATGTAAAAAAAGCGGCAGGGATGGACTCAGACGTCTTGAGCAGTTATGTCACAAAGCTCGAGATGGGGCTCGAAAAAGTAAGGTTGGTTTTGCAATTCGAAAAACCAGGAATGCAGGGAAGATTCTTCAACTCAATGAAAACATTCTTGAAAGAGGCAGAAGAGGAAATAGTCAAGATTAAGGCTGACGAAAAACAAGCTTTATCGCTTGTTAAAGCAGTTACAGAGTATTTCCATGGTGATACTGCCAAGGAGGAAGCACATCCCTTCCGAATATTCATGATCGTTCGTGATTTCCTAACTGTACTGGATCAAGTATGCAAAGAAGTCGGGCGAATGCAGGACGGGGTAATGGTCGGTGCAGCTAGATCCTTTCGGATATCCGCTACAGCTTCACTCCCAGTCCTTAGCAGGTATAATGTCAGACACGACCGAAGCTCCGACGAGGATAGCTCATCTCCATGA | 2724 | 47.94 | MRAHRLSFFISFLSIFATFITATGLTLLNDSGISYRRILHQPLFPVASEPPPDIDLSPPPPPPPDSPSDDQPFFHELPTSPDQSQPSPTSSNGTMPIPASTAQPSKPTKTVAIAISVGIVTLGMLSALAFFLYRHRAKHPGESQKLVGGNNPERFVEDSRAPPSSFFYIGTVEPTQSSIVEQNGANGANSSPYRKLNSIKRSDRYRPSPELQPLPPLPKPPVAMSPPALSSSDEESQDTAFHTPQCSSIVSHDEGYFSPASRRSNSVKSCSTASFKNDHMNSNPPPIPHSKRTSPKSRFSVSSTKRTSSQPQPPPPPPPPPRPFDEFRETPNSKETMPFSSTRPKFSKPPPPPNLALLQTISNSTTFPQVPQPAVAPPPPPPPPPPPPRPPARPASYSTPQKLGLSETRMSAVTPPDSSKSQSYSTARSNSSPKSTPSSATTNSAKEDVVPRINSMERLEAEDAEGAKPRLKPLHWDKVRATSDRATVWDQLKSSSFQLNEDMMETLFGFNSANSVPKEATRKSVLPPVEKENRVLDPKKSQNIAILLRALNVTRDEVIEALQDGNPEGFGTELLETLVKMAPTKEEEIKLREYSGDVSKLGTAERFLKAVLEVPFAFRRVEAMLYRANFDSEVKYLRKSFQTLEGASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGGADSTNDNLQPRTQAKIEDEFRKQGLQVVAGLSRDLANVKKAAGMDSDVLSSYVTKLEMGLEKVRLVLQFEKPGMQGRFFNSMKTFLKEAEEEIVKIKADEKQALSLVKAVTEYFHGDTAKEEAHPFRIFMIVRDFLTVLDQVCKEVGRMQDGVMVGAARSFRISATASLPVLSRYNVRHDRSSDEDSSSP | 907 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 7336609 | 7341463 | + | Lsi10G005140.1 | Lsi10g00514 | 672071 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi10g00514 | 907 | MobiDBLite | consensus disorder prediction | 209 | 225 | - | - | |
| Lsi10g00514 | 907 | MobiDBLite | consensus disorder prediction | 371 | 395 | - | - | |
| Lsi10g00514 | 907 | PANTHER | FORMIN-RELATED | 11 | 907 | IPR027643 | GO:0003779|GO:0030036|GO:0045010|GO:0051015 | |
| Lsi10g00514 | 907 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 378 | 867 | - | - | |
| Lsi10g00514 | 907 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 461 | 882 | IPR015425 | - | |
| Lsi10g00514 | 907 | Pfam | Formin Homology 2 Domain | 466 | 856 | IPR015425 | - | |
| Lsi10g00514 | 907 | Gene3D | Formin, FH2 domain | 455 | 867 | IPR042201 | - | |
| Lsi10g00514 | 907 | SMART | it6_source | 461 | 871 | IPR015425 | - | |
| Lsi10g00514 | 907 | Coils | Coil | 803 | 823 | - | - | |
| Lsi10g00514 | 907 | MobiDBLite | consensus disorder prediction | 399 | 449 | - | - | |
| Lsi10g00514 | 907 | PANTHER | FORMIN-LIKE PROTEIN 6 | 11 | 907 | - | - | |
| Lsi10g00514 | 907 | MobiDBLite | consensus disorder prediction | 229 | 308 | - | - | |
| Lsi10g00514 | 907 | MobiDBLite | consensus disorder prediction | 309 | 326 | - | - | |
| Lsi10g00514 | 907 | MobiDBLite | consensus disorder prediction | 49 | 69 | - | - | |
| Lsi10g00514 | 907 | MobiDBLite | consensus disorder prediction | 77 | 107 | - | - | |
| Lsi10g00514 | 907 | MobiDBLite | consensus disorder prediction | 49 | 107 | - | - | |
| Lsi10g00514 | 907 | MobiDBLite | consensus disorder prediction | 199 | 453 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi02g00091 | Lsi-Chr2:754442 | Lsi10g00514 | Lsi-Chr10:7336609 | 1.04E-27 | dispersed | |
| Lsi06g01445 | Lsi-Chr6:25001154 | Lsi10g00514 | Lsi-Chr10:7336609 | 8.98E-20 | dispersed | |
| Lsi04g00506 | Lsi-Chr4:4693950 | Lsi10g00514 | Lsi-Chr10:7336609 | 1.52E-95 | transposed | |
| Lsi04g01249 | Lsi-Chr4:19469447 | Lsi10g00514 | Lsi-Chr10:7336609 | 2.60E-124 | transposed | |
| Lsi05g01149 | Lsi-Chr5:19328641 | Lsi10g00514 | Lsi-Chr10:7336609 | 1.79E-177 | transposed | |
| Lsi06g00120 | Lsi-Chr6:1169294 | Lsi10g00514 | Lsi-Chr10:7336609 | 9.08E-129 | transposed | |
| Lsi08g00735 | Lsi-Chr8:15695699 | Lsi10g00514 | Lsi-Chr10:7336609 | 2.81E-97 | transposed | |
| Lsi10g00161 | Lsi-Chr10:2592284 | Lsi10g00514 | Lsi-Chr10:7336609 | 3.06E-125 | transposed | |
| Lsi11g00020 | Lsi-Chr11:225806 | Lsi10g00514 | Lsi-Chr10:7336609 | 2.25E-173 | transposed | |
| Lsi01g00902 | Lsi-Chr1:7266130 | Lsi10g00514 | Lsi-Chr10:7336609 | 4.34E-29 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi10g00514 | - | - | csv:101208011 | 1427.15 |