Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00520 ATGGAAAGTATATGCATTAAACTTGAAACTATGTTATCGGAAGAAAAAGAATTTAGGATCACCGTCCTACCACTGTTCGCCTCCGGCCACATAATTCCGATCGTGGACATGGCCAGGCTCTTTGCTCGCCATGGTGCCACTATCACCATCATCGCCACCGAGTCCAATGCCTGTATTTTCCAAAACAACATTGACCGTGACTTTGCCGTTGGATTCAAAATTCAGACCCATATTGTTACCTTCCCCGGAGCCGAGGTCGGCCTTGCTCCCGGCATCGAAAACTACAGCAATGTCTCTTCTCGCCACCTCCAATCCAAAATCTATCAAGCCTTTCTCATTCTCGACAAACTTATAGATCAGGAGATCATTCCGGCGACTCGACCAGACTGCATTCTAAGTGACCTGTCATATCCGTGGACGACAGATACTGCAGAGAGGCTCAAGGTGCCGCGACTGGTGTTCTCCGTGTCCAATTTCATGGCATACTCTGCAGAGCACTCTGTTATGCAAGATTCTCCTCACCAGAAAGTAGCCTCAGACATAGAGGCATTTGAAATCCCAGGATTACCCCACCACATCCAAATGACCAAATCCCAGCAGCCAGAATTTCTTATTCGACGAGACGGCTTCACAGCGTTGATAGAGAAGTACAAGGAAGCAGAGAGAAGAAGCTATGGAACTGTAATGAATACATTTTATGAGTTGGATGGGGTTTATTTAGAGCATTACAAAAAGATAATCGGAATCAAAGCCTGGGGATTAGGCCCAGTTTCATTGGCAGCAAATAAAGATATGAGAGAAAAAATCGAGAGGGGAAACAAAGGAATAGAGAATGAGGAATTATTGGAATGGTTGAATTCCAAGGAACCAAATTCTGTTTTGTATGTGAGTTTTGGGACTATGGCTAGGTTTATGCCACCGCAAATGGCTGAGATTGCACATGGGCTTGAAGATTCTAACATAAATTTCATATGGGTCATTCGAAAAAAGGACAAAAATGACGGCAAAGAGGCGGAGGAGGGGTTGCCGGAGGGGTTTGAACAGAGGATTAAGAATAAAAACAAGGGATTCATTGTTCGGATTTGGGTGCCACAACTTTTGATTTTGGAGCACCCATCGACGGGGGGTTTCTTGACGCACTGTGGGTGGAATTCGTCCATTGAAGGGATTAGCGCGGGTAAGCCAATGGTGACATGGCCAGTAAGCTCTGAGCAGTTTTATAATGAGAAGCTTCTGACGGAGGTGCTGCAAGTAGGGGTTCCAGTGGGGGCGCGGTGGTGGTGGAATATGAGCGATGAGATGAAGGAGATCGTGAGTAGAGAGAAAGTGGAGAAGAGTGTGAAGTTTCTAATGGGGATAACGGAGGAGGCAACAACGATTAGAAAGCGGGTCAAACATCTTGGGGCTGCAGCGAACAAGGCGGTTCAAAGCGGCGGCTCGATGCAGAGGAAGAAATTCATCGAAAATATATGCCTTAAATAA 1482 46.09 MESICIKLETMLSEEKEFRITVLPLFASGHIIPIVDMARLFARHGATITIIATESNACIFQNNIDRDFAVGFKIQTHIVTFPGAEVGLAPGIENYSNVSSRHLQSKIYQAFLILDKLIDQEIIPATRPDCILSDLSYPWTTDTAERLKVPRLVFSVSNFMAYSAEHSVMQDSPHQKVASDIEAFEIPGLPHHIQMTKSQQPEFLIRRDGFTALIEKYKEAERRSYGTVMNTFYELDGVYLEHYKKIIGIKAWGLGPVSLAANKDMREKIERGNKGIENEELLEWLNSKEPNSVLYVSFGTMARFMPPQMAEIAHGLEDSNINFIWVIRKKDKNDGKEAEEGLPEGFEQRIKNKNKGFIVRIWVPQLLILEHPSTGGFLTHCGWNSSIEGISAGKPMVTWPVSSEQFYNEKLLTEVLQVGVPVGARWWWNMSDEMKEIVSREKVEKSVKFLMGITEEATTIRKRVKHLGAAANKAVQSGGSMQRKKFIENICLK 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7405315 7407823 - Lsi10G005200.1 Lsi10g00520 672077

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00520 493 Gene3D Glycogen Phosphorylase B; 267 473 - -
Lsi10g00520 493 Gene3D Glycogen Phosphorylase B; 22 481 - -
Lsi10g00520 493 ProSitePatterns UDP-glycosyltransferases signature. 362 405 IPR035595 -
Lsi10g00520 493 CDD GT1_Gtf-like 19 490 IPR002213 GO:0008194
Lsi10g00520 493 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 14 488 - -
Lsi10g00520 493 PANTHER GLYCOSYLTRANSFERASE 15 489 - -
Lsi10g00520 493 PANTHER SOYASAPOGENOL B GLUCURONIDE GALACTOSYLTRANSFERASE-RELATED 15 489 - -
Lsi10g00520 493 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 249 413 IPR002213 GO:0008194
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00520 - - K23260 bhj:120087918 824.313
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00228 Lsi-Chr5:3038876 Lsi10g00520 Lsi-Chr10:7405315 8.52E-140 dispersed
Lsi10g00520 Lsi-Chr10:7405315 Lsi03g00507 Lsi-Chr3:5878184 5.77E-136 dispersed
Lsi10g00518 Lsi-Chr10:7385971 Lsi10g00520 Lsi-Chr10:7405315 6.51E-158 proximal
Lsi10g00520 Lsi-Chr10:7405315 Lsi10g00521 Lsi-Chr10:7424642 4.02E-71 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g381 . . . . . Bpe12g00051 . . Cmo19g00611 . . . . . . . . Bhi05g01080 . . . . . . Cla02g00617 . . . . . . . Cone8ag1119 . . Lsi10g00520 Csa07g00741 . Cme01g00064 Blo04g00477 Blo13g00583 Bda15g00041 . Bpe15g00905 . . Bma08g00809 . . . . Cma19g00593 . . . . . . . . . . . . . . . . . . . . Chy01g00069 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004448 0 2 0 0 0 2 0 2 2 0 2 2 1 1 1 1 2 0 0 2 3 1 2 2 6 3 2 2 1 0 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00520 Lsi_Chr10 FPKM 0.383985 0.592257 0.0 0.396908 0.411866 0.51109 0.779203 0.259903 0.267001 0.812216