Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00522 ATGAAAGAGAAAAATGAAGAGAGAAAATTAAAGCAATTCAAAGGGATAAGGATGAGGAAATGGGGAAAATGGGTTGCTGAAATTCGAGAGCCTAATAAACGCTCTCGAATTTGGCTCGGTTCTTATTCCTCTCCCGTCGCCGCCGCCCGTGCCTACGACGCCGCCGTCTTCCACCTCCGTGGCCCTTCCGCCCGCCTTAATTTTCCTGACTTTTTCACCACCGTTGACCGCTCCTTCCCTCTCTCCGCCGCTGCCGTCCGCAAGATCGCCTCTGAGGTCGGCGCCCATGTCGACGCCCTCGAGTCCTCTCTCCGCCACCACTTTGTCCATTCCTCCGACCAAAGTCTGAACCCCACGAAGCTTCGTTCTTCCTCCAGTGGGTTTTCCGATCGGAAATTTATTTTCATATACAATCTA 417 52.52 MKEKNEERKLKQFKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDAAVFHLRGPSARLNFPDFFTTVDRSFPLSAAAVRKIASEVGAHVDALESSLRHHFVHSSDQSLNPTKLRSSSSGFSDRKFIFIYNL 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7432528 7437297 + Lsi10G005220.1 Lsi10g00522 672079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00522 139 CDD AP2 11 70 IPR001471 GO:0003700|GO:0006355
Lsi10g00522 139 Gene3D AP2/ERF domain 11 70 IPR036955 GO:0003700|GO:0006355
Lsi10g00522 139 Pfam AP2 domain 12 61 IPR001471 GO:0003700|GO:0006355
Lsi10g00522 139 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 6 130 - -
Lsi10g00522 139 SMART rav1_2 12 75 IPR001471 GO:0003700|GO:0006355
Lsi10g00522 139 ProSiteProfiles AP2/ERF domain profile. 12 69 IPR001471 GO:0003700|GO:0006355
Lsi10g00522 139 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 6 130 - -
Lsi10g00522 139 SUPERFAMILY DNA-binding domain 12 70 IPR016177 GO:0003677
Lsi10g00522 139 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Lsi10g00522 139 PRINTS Ethylene responsive element binding protein signature 51 71 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00965 Lsi10g00522 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01534 Lsi-Chr4:22965083 Lsi10g00522 Lsi-Chr10:7432528 1.85E-41 dispersed
Lsi08g01490 Lsi-Chr8:23067211 Lsi10g00522 Lsi-Chr10:7432528 1.12E-35 dispersed
Lsi10g00522 Lsi-Chr10:7432528 Lsi08g00823 Lsi-Chr8:16615372 2.96E-26 dispersed
Lsi01g00965 Lsi-Chr1:7834851 Lsi10g00522 Lsi-Chr10:7432528 3.38E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26023 PF00847 AP2 2.40E-11 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00522 K09286 - csv:101209150 198.364