Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g00523 | ATGTGGGATCTCAATGATTCTCCCGATCATGGCAGAACTGATGAATTTGAGATTCTTTCATCGATTGACGGCGATGAAGACAGAGCGAAATGGATAGGATCCATTAATTCTAACTCGAGCTCTTCGGTGGTGGTTATGGAGGATGGATCCGACGCCGATGAGGCTAGCGTCGGCGAGGACGAACCACTAGTCCAACGGAAAAACTTCTCGGTAACTCACCCGCCGGCGACTCGGCAGTTCTTTCCCATGGAGGATTCCGACGTGGGGGCTTCATCGGCCGCCGTCGGTGGTTCAGCTACGTTCCCTCGAGCTCGATGGGTCGGCGTGAAGTTTTGCCAAACAGAGCCTGTCGCTGCTGTGAGACCAATGGCAGTTCTACAGCCGATAAAGAAAAGCCGGCGAGGGCCTAGGTCGCGGAGTTCTCAATATCGCGGTGTCACGTTCTACCGGCGCACCGGCCGGTGGGAATCTCACATATGGGACTGTGGCAAACAAGTTTATCTGGGCGGATTTGATACTGCTCATGCGGCTGCTCGGGCCTACGACAGGGCAGCTATAAAGTTTCGAGGAACAGAGGCAGACATAAATTTCAGTATTGAAGACTACGAGGAGGATATGCAGCAGATGGGAAATTTGACTAAGGAAGAATTTGTGCATGTTCTTCGTAGACAAAGCACGGGTTATCCGAGAGGAAGCTCGAAATTTAGAGGTGTAACATTGCATAAATGTGGAAGATGGGAGGCTCGGATGGGCCAGTTTTTAGGCAAAAAGTACGTTTACTTGGGGTTGTTCGATTCCGAGATCGAAGCTGCAAGAGCTTATGATAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTTACAAACTTTGATCCCAGCATATATGAGGATGAGCTGAGTACAACTGAATCATCATCAGCCAAAGTCTTAGAACAGAATCTTGATTTGAGGTTGGGCAATTCAAGCTCAAAAAAACACACTCTTTCATTTGGGAATCATTGCCCAAATGTCACCCCAAATATTGATTTGCAAATTACTAATGAATCTAACCCTCAGGAATCAAATATATTTGAGAATGATAATGGTGGTTGCTGTACGTTCCTTCAGACAAAGATACTGCAGTTTCGTAGTGAAACGATCGTTCAATCTCCACCTCCACCGTCGGTCGAAATGACGAAACATGGGCGCTTGGAGACGCCCATGGAATTGCAGACTCTTCACAATCACTCTCCACACATCAATCAATCAAACTCTCAAATTCAGTTGTTGAGCAGCAGCAATGAAGGAGGAGGGTTAGGCAGTGATGAACTTTCACTGTGTTTGAATGAAGGCCACCACCAATGGCAGCAATCTGGTGGCTCTCAACAATTTGCAAATGCTGCAGCATCATCAGGATTCCCACAACTTCAAATTTCAACTTCCCAAAATTGGCTGCAGAAAAATAATGGATGCTTCTTCTTACAGAGACCCTCTTGA | 1476 | 46.88 | MWDLNDSPDHGRTDEFEILSSIDGDEDRAKWIGSINSNSSSSVVVMEDGSDADEASVGEDEPLVQRKNFSVTHPPATRQFFPMEDSDVGASSAAVGGSATFPRARWVGVKFCQTEPVAAVRPMAVLQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGTEADINFSIEDYEEDMQQMGNLTKEEFVHVLRRQSTGYPRGSSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKCNGKEAVTNFDPSIYEDELSTTESSSAKVLEQNLDLRLGNSSSKKHTLSFGNHCPNVTPNIDLQITNESNPQESNIFENDNGGCCTFLQTKILQFRSETIVQSPPPPSVEMTKHGRLETPMELQTLHNHSPHINQSNSQIQLLSSSNEGGGLGSDELSLCLNEGHHQWQQSGGSQQFANAAASSGFPQLQISTSQNWLQKNNGCFFLQRPS | 491 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 7461585 | 7465816 | + | Lsi10G005230.1 | Lsi10g00523 | 672080 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g00523 | 491 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE3 | 1 | 468 | - | - | |
Lsi10g00523 | 491 | SUPERFAMILY | DNA-binding domain | 233 | 293 | IPR016177 | GO:0003677 | |
Lsi10g00523 | 491 | ProSiteProfiles | AP2/ERF domain profile. | 234 | 291 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi10g00523 | 491 | Gene3D | AP2/ERF domain | 141 | 200 | IPR036955 | GO:0003700|GO:0006355 | |
Lsi10g00523 | 491 | Gene3D | AP2/ERF domain | 233 | 292 | IPR036955 | GO:0003700|GO:0006355 | |
Lsi10g00523 | 491 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 468 | - | - | |
Lsi10g00523 | 491 | SUPERFAMILY | DNA-binding domain | 141 | 199 | IPR016177 | GO:0003677 | |
Lsi10g00523 | 491 | ProSiteProfiles | AP2/ERF domain profile. | 142 | 198 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi10g00523 | 491 | CDD | AP2 | 233 | 293 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi10g00523 | 491 | Pfam | AP2 domain | 142 | 190 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi10g00523 | 491 | Pfam | AP2 domain | 233 | 282 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi10g00523 | 491 | PRINTS | Ethylene responsive element binding protein signature | 235 | 246 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi10g00523 | 491 | PRINTS | Ethylene responsive element binding protein signature | 273 | 293 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi10g00523 | 491 | CDD | AP2 | 142 | 197 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi10g00523 | 491 | SMART | rav1_2 | 142 | 204 | IPR001471 | GO:0003700|GO:0006355 | |
Lsi10g00523 | 491 | SMART | rav1_2 | 234 | 297 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi01g00966 | Lsi10g00523 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01365 | Lsi-Chr1:11841693 | Lsi10g00523 | Lsi-Chr10:7461585 | 6.69E-60 | dispersed | |
Lsi03g02059 | Lsi-Chr3:31912674 | Lsi10g00523 | Lsi-Chr10:7461585 | 1.75E-90 | dispersed | |
Lsi04g00819 | Lsi-Chr4:7812200 | Lsi10g00523 | Lsi-Chr10:7461585 | 1.82E-10 | dispersed | |
Lsi10g00523 | Lsi-Chr10:7461585 | Lsi10g01313 | Lsi-Chr10:17329232 | 2.31E-101 | dispersed | |
Lsi01g00966 | Lsi-Chr1:7854085 | Lsi10g00523 | Lsi-Chr10:7461585 | 9.60E-121 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
26024 | PF00847 | AP2 | 2.00E-09 | CL0081 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g00523 | K09284 | - | csv:101208665 | 813.527 |