Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00523 ATGTGGGATCTCAATGATTCTCCCGATCATGGCAGAACTGATGAATTTGAGATTCTTTCATCGATTGACGGCGATGAAGACAGAGCGAAATGGATAGGATCCATTAATTCTAACTCGAGCTCTTCGGTGGTGGTTATGGAGGATGGATCCGACGCCGATGAGGCTAGCGTCGGCGAGGACGAACCACTAGTCCAACGGAAAAACTTCTCGGTAACTCACCCGCCGGCGACTCGGCAGTTCTTTCCCATGGAGGATTCCGACGTGGGGGCTTCATCGGCCGCCGTCGGTGGTTCAGCTACGTTCCCTCGAGCTCGATGGGTCGGCGTGAAGTTTTGCCAAACAGAGCCTGTCGCTGCTGTGAGACCAATGGCAGTTCTACAGCCGATAAAGAAAAGCCGGCGAGGGCCTAGGTCGCGGAGTTCTCAATATCGCGGTGTCACGTTCTACCGGCGCACCGGCCGGTGGGAATCTCACATATGGGACTGTGGCAAACAAGTTTATCTGGGCGGATTTGATACTGCTCATGCGGCTGCTCGGGCCTACGACAGGGCAGCTATAAAGTTTCGAGGAACAGAGGCAGACATAAATTTCAGTATTGAAGACTACGAGGAGGATATGCAGCAGATGGGAAATTTGACTAAGGAAGAATTTGTGCATGTTCTTCGTAGACAAAGCACGGGTTATCCGAGAGGAAGCTCGAAATTTAGAGGTGTAACATTGCATAAATGTGGAAGATGGGAGGCTCGGATGGGCCAGTTTTTAGGCAAAAAGTACGTTTACTTGGGGTTGTTCGATTCCGAGATCGAAGCTGCAAGAGCTTATGATAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTTACAAACTTTGATCCCAGCATATATGAGGATGAGCTGAGTACAACTGAATCATCATCAGCCAAAGTCTTAGAACAGAATCTTGATTTGAGGTTGGGCAATTCAAGCTCAAAAAAACACACTCTTTCATTTGGGAATCATTGCCCAAATGTCACCCCAAATATTGATTTGCAAATTACTAATGAATCTAACCCTCAGGAATCAAATATATTTGAGAATGATAATGGTGGTTGCTGTACGTTCCTTCAGACAAAGATACTGCAGTTTCGTAGTGAAACGATCGTTCAATCTCCACCTCCACCGTCGGTCGAAATGACGAAACATGGGCGCTTGGAGACGCCCATGGAATTGCAGACTCTTCACAATCACTCTCCACACATCAATCAATCAAACTCTCAAATTCAGTTGTTGAGCAGCAGCAATGAAGGAGGAGGGTTAGGCAGTGATGAACTTTCACTGTGTTTGAATGAAGGCCACCACCAATGGCAGCAATCTGGTGGCTCTCAACAATTTGCAAATGCTGCAGCATCATCAGGATTCCCACAACTTCAAATTTCAACTTCCCAAAATTGGCTGCAGAAAAATAATGGATGCTTCTTCTTACAGAGACCCTCTTGA 1476 46.88 MWDLNDSPDHGRTDEFEILSSIDGDEDRAKWIGSINSNSSSSVVVMEDGSDADEASVGEDEPLVQRKNFSVTHPPATRQFFPMEDSDVGASSAAVGGSATFPRARWVGVKFCQTEPVAAVRPMAVLQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGTEADINFSIEDYEEDMQQMGNLTKEEFVHVLRRQSTGYPRGSSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKCNGKEAVTNFDPSIYEDELSTTESSSAKVLEQNLDLRLGNSSSKKHTLSFGNHCPNVTPNIDLQITNESNPQESNIFENDNGGCCTFLQTKILQFRSETIVQSPPPPSVEMTKHGRLETPMELQTLHNHSPHINQSNSQIQLLSSSNEGGGLGSDELSLCLNEGHHQWQQSGGSQQFANAAASSGFPQLQISTSQNWLQKNNGCFFLQRPS 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7461585 7465816 + Lsi10G005230.1 Lsi10g00523 672080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00523 491 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE3 1 468 - -
Lsi10g00523 491 SUPERFAMILY DNA-binding domain 233 293 IPR016177 GO:0003677
Lsi10g00523 491 ProSiteProfiles AP2/ERF domain profile. 234 291 IPR001471 GO:0003700|GO:0006355
Lsi10g00523 491 Gene3D AP2/ERF domain 141 200 IPR036955 GO:0003700|GO:0006355
Lsi10g00523 491 Gene3D AP2/ERF domain 233 292 IPR036955 GO:0003700|GO:0006355
Lsi10g00523 491 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 468 - -
Lsi10g00523 491 SUPERFAMILY DNA-binding domain 141 199 IPR016177 GO:0003677
Lsi10g00523 491 ProSiteProfiles AP2/ERF domain profile. 142 198 IPR001471 GO:0003700|GO:0006355
Lsi10g00523 491 CDD AP2 233 293 IPR001471 GO:0003700|GO:0006355
Lsi10g00523 491 Pfam AP2 domain 142 190 IPR001471 GO:0003700|GO:0006355
Lsi10g00523 491 Pfam AP2 domain 233 282 IPR001471 GO:0003700|GO:0006355
Lsi10g00523 491 PRINTS Ethylene responsive element binding protein signature 235 246 IPR001471 GO:0003700|GO:0006355
Lsi10g00523 491 PRINTS Ethylene responsive element binding protein signature 273 293 IPR001471 GO:0003700|GO:0006355
Lsi10g00523 491 CDD AP2 142 197 IPR001471 GO:0003700|GO:0006355
Lsi10g00523 491 SMART rav1_2 142 204 IPR001471 GO:0003700|GO:0006355
Lsi10g00523 491 SMART rav1_2 234 297 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00966 Lsi10g00523 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01365 Lsi-Chr1:11841693 Lsi10g00523 Lsi-Chr10:7461585 6.69E-60 dispersed
Lsi03g02059 Lsi-Chr3:31912674 Lsi10g00523 Lsi-Chr10:7461585 1.75E-90 dispersed
Lsi04g00819 Lsi-Chr4:7812200 Lsi10g00523 Lsi-Chr10:7461585 1.82E-10 dispersed
Lsi10g00523 Lsi-Chr10:7461585 Lsi10g01313 Lsi-Chr10:17329232 2.31E-101 dispersed
Lsi01g00966 Lsi-Chr1:7854085 Lsi10g00523 Lsi-Chr10:7461585 9.60E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26024 PF00847 AP2 2.00E-09 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00523 K09284 - csv:101208665 813.527