Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00525 ATGGCTCCGGATTCCTCCAACTGCCGTTCTGGCCTTAAAGATATTTCCCAGGGCATCTACCCTACACTTCTTATTGACAAAGCTCGGTTGGAGAAAGATCTTGAGATTGCAAATGATAAACTTTCTGCAGCTCTCTCTGAGTGTAAGACAAAAGATGAACTTGTGAAGAAACTTACAAACATGGAACAAGAAGCCATTGCCAGATGGGAGAAGTCAAAATCTGAAGCAGCAGCCTTAAAGCAAGAACTAAATGATGCTGTACAGAAGAGGCTTGCTGGTGAAGAGAGAGTGATTCATCTAGATGCAGCGCTAAAGGAATGCATGCAGCAGCTACGTTTTGTTCGAGAAGAGCAGGAGCGAAGGATCCATGATGCCGTCTCAAAGACATCAAATGAATTTGAAAAGTCCCAAAAGATTTTGGAGGAGAAGTTGGCTGATACTGGTAAAAGGCTTTCAAAATTGGGGGGCGAGAACACTCAACTTAGCAAGGCGTTGTTGGTGAAGGAAAAGATGATTGAAGATGTAAATAGACAGTTGGCTGGCATGGAGGCAGATCTTAATGCATTGGTATCTAGATTAGAATCCACAGAGAAAGAAAATGGCACCCTAAAATATGAAGTTAGGGTGCTTGAGAAGGAGGTTGAGATTCGGAATGAGGAGAGAGAATTTAATCGACGGACTGCAGATGCATCACATAAGCAACACTTGGAGAGTGTGAAAAAAATTGCAAAACTTGAATCAGAGTGTCAAAGGCTGCGCCTCCTTGTCCGGAAGAGGTTGCCAGGTCCTGCAGCCTTAGTAAAGATGAAAAATGAAGTTGAAATGCTAGGAAGGGATTCATTTGAGATCAGAAGACGGCAGAAGAATTCAACAGGTTCATTGGACTCTTCACTAGAGAACTCTCCAGAGACTCCTAACAGACGTATTAGTGTTCTAACCTCCAGAGTGTCAGCTTTGGAAGAAGAGAACAGTGCCCTCAAAGAAGCTCTCAACAACATGAATAATGAACTTCAAGTTGCAAAAATCATGCACGCCCATGGGTCTCCAAAGCCGTTACAAGTTGAATCACCCCACAAATTATCTAATGGTCATAAAACCATGGAATCAGGAAAGAGTAGTCAGACATTACCTGATCTCCCTCACGCTTCAATGTCTGACACTGGGAGCGACGATAAGGTTAGCTCTGCTGAATCATGGGCTTCTGCATTGATTTCAGAATTGGAGCACTCCAAAAACGGTAAGCAGAAAGGGTCAACAACAACATGCAAAATAGTTGGATCTTCTGATTTGGATCTGATGGATGACTTTGTTGAAATGGAAAAATTGGCTATTGTCTCTGTTGACAAGTCTCCCGCAAATTCTCAGAGTCTTTCAAATGAAGTTAATGGAAAACCCAAGTCATTGGAAACTGAGCTAAATGGATGTTACCCTGAAGCAGTATCGAAGGAGACAGTCCCAAGGGCTTGTAGTGATTTGGGCTCCTGTTTAACATACCCCGATTGGGTTCAAAATATCTTGAAAATGGTCTTTGACCAGAGTAGTTTCTCCAAAAGAGCCCCTGAACAGATACTGGAGGATATTAGAGCAGCAATGAAAACCCAGGATCCTGGAAATTCTATTGATACAAAAAAGGATGGAAATCATTGTGGTGATATCGCTCGTAATAATGGCCACAAGTTGCAGAAACCGTTGGGGATAGATTCAGTGAGTGAAGCAAATGACACTGACATCACTTCAATGGAGAAGCATGACAAGCATGAGGTAGATCTACGTGGTTCAATATTGAGATTGATTGAGCTTGTAGAAGGGGTTAGTGTGACATCTTCAGATGATGATAACTCTTCCTCCAGAAAGGATGGTAGTTTCTATTCTGAAACACCTACAGGCTATATGGTTCGAGTTTTCCAATGGAAAACATCTGAACTAAACACTATTTTGAAGCAGTTTATACACAACTGCTATGATATGTTGAGTGGAAACGCAAATATTGGTAACTTTGTGCAAGAACTAAATTCCACTTTGGATTGGATTGTGAATCACTGTTTTTCACTTCAAGATGTTTCTAGCATGAGAGACTCCATAAAGAAGCATTTCAATTGGGATGAATCACGTAGTGACTGTGATCTGGAAACCGGGACAAATGTTCATGTTTCAGAAGTCGATAAATCACGTGTTCCCAGAGAACAGATTTCATGGTTGAAAAAGGATTCCATTTCAAATAACCATAATGCGCCAACTGGAGAGCTACAATCTACCTTGTCCGAAGAAAATAGTAAACTGGAAGAAGAGCCAACGAGTGTAGAATCTGCAAATAAACATCTTGAAGCAAAGTTTCAGTCTACTACTGGTGCAAGTGAAACGTTAACAAATCAACTTCAAGAATCTGAGAAGAAAATTGTTAACTTGCAGAAGGAGTTAGAAAGCCTTAAAGAATTGAAGGGAACAATTGAAAGTCAAATTGTCAATCAGCGCTTAGTGAATCAAGATCTAGACACACAGCTTACGGCTGCTAGAAATGAACTAAATGAGAGTCGCAAAAACTTTGCAGCTCTAGAAGTTGAATTGGACAATAAAAACAATTGCTTTGAAGAATTGGAGGCCACATGTCTTGAACTGCAACTTCAGCTGGAAAGCACACGGAAACAAACCCCATGCACAGATCCCGGTCAGGAAGAGAAGCAACTACGCACGGAATGGGAGATAACAACTGCTTCTGAAAAATTAGCAGAGTGCCAAGAGACGATTCTTAACCTTGGGAAGCAGTTGAAGGCTCTGGCTACACCCAAGGAAGCTGCACTTTTAGACAAAGTCGTCCCCACTCCAAATGACGAAACGCAAACGTCTACCGTCTCCACCACCACAACTACTCCGGTGACAGACACAACCTCGACCCCAACTGCTTCCAGTACCAAGACGACAAATAACCGGTTCTCTCTGCTAGATCAGATGCTAGCAGAGGACGATGCCTTCCCTAGAGATCATAAAACTTCAAAGCCTGTAGAAGTCGACACCATCCACACTTCGACATCAGATCTCGATAAGTCAGTTGATCCACACAAAGCAATCCTCATATGGAGTGGACATAAAAATGGACTGAACAGAGATACCGTTAATAATTTAGCTATTGTGCCGAGCAGGAAGCGGGGAGACGGTGCATTGTGGAGAAAACTCTTATGGAGAAAGAAGAAAGTCAGGAGCCAGAAAAAGACCCTTCTATTTGCAGCATGA 3228 42.13 MAPDSSNCRSGLKDISQGIYPTLLIDKARLEKDLEIANDKLSAALSECKTKDELVKKLTNMEQEAIARWEKSKSEAAALKQELNDAVQKRLAGEERVIHLDAALKECMQQLRFVREEQERRIHDAVSKTSNEFEKSQKILEEKLADTGKRLSKLGGENTQLSKALLVKEKMIEDVNRQLAGMEADLNALVSRLESTEKENGTLKYEVRVLEKEVEIRNEEREFNRRTADASHKQHLESVKKIAKLESECQRLRLLVRKRLPGPAALVKMKNEVEMLGRDSFEIRRRQKNSTGSLDSSLENSPETPNRRISVLTSRVSALEEENSALKEALNNMNNELQVAKIMHAHGSPKPLQVESPHKLSNGHKTMESGKSSQTLPDLPHASMSDTGSDDKVSSAESWASALISELEHSKNGKQKGSTTTCKIVGSSDLDLMDDFVEMEKLAIVSVDKSPANSQSLSNEVNGKPKSLETELNGCYPEAVSKETVPRACSDLGSCLTYPDWVQNILKMVFDQSSFSKRAPEQILEDIRAAMKTQDPGNSIDTKKDGNHCGDIARNNGHKLQKPLGIDSVSEANDTDITSMEKHDKHEVDLRGSILRLIELVEGVSVTSSDDDNSSSRKDGSFYSETPTGYMVRVFQWKTSELNTILKQFIHNCYDMLSGNANIGNFVQELNSTLDWIVNHCFSLQDVSSMRDSIKKHFNWDESRSDCDLETGTNVHVSEVDKSRVPREQISWLKKDSISNNHNAPTGELQSTLSEENSKLEEEPTSVESANKHLEAKFQSTTGASETLTNQLQESEKKIVNLQKELESLKELKGTIESQIVNQRLVNQDLDTQLTAARNELNESRKNFAALEVELDNKNNCFEELEATCLELQLQLESTRKQTPCTDPGQEEKQLRTEWEITTASEKLAECQETILNLGKQLKALATPKEAALLDKVVPTPNDETQTSTVSTTTTTPVTDTTSTPTASSTKTTNNRFSLLDQMLAEDDAFPRDHKTSKPVEVDTIHTSTSDLDKSVDPHKAILIWSGHKNGLNRDTVNNLAIVPSRKRGDGALWRKLLWRKKKVRSQKKTLLFAA 1075
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7503788 7508410 + Lsi10G005250.1 Lsi10g00525 672082

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00525 1075 MobiDBLite consensus disorder prediction 366 397 - -
Lsi10g00525 1075 Coils Coil 66 89 - -
Lsi10g00525 1075 Coils Coil 309 343 - -
Lsi10g00525 1075 MobiDBLite consensus disorder prediction 284 307 - -
Lsi10g00525 1075 Coils Coil 172 213 - -
Lsi10g00525 1075 MobiDBLite consensus disorder prediction 534 565 - -
Lsi10g00525 1075 MobiDBLite consensus disorder prediction 348 397 - -
Lsi10g00525 1075 MobiDBLite consensus disorder prediction 940 972 - -
Lsi10g00525 1075 MobiDBLite consensus disorder prediction 538 552 - -
Lsi10g00525 1075 MobiDBLite consensus disorder prediction 735 769 - -
Lsi10g00525 1075 Coils Coil 27 47 - -
Lsi10g00525 1075 MobiDBLite consensus disorder prediction 735 754 - -
Lsi10g00525 1075 MobiDBLite consensus disorder prediction 755 769 - -
Lsi10g00525 1075 Coils Coil 785 819 - -
Lsi10g00525 1075 PANTHER FILAMENT-LIKE PLANT PROTEIN 7 29 1068 - -
Lsi10g00525 1075 Coils Coil 827 882 - -
Lsi10g00525 1075 MobiDBLite consensus disorder prediction 290 307 - -
Lsi10g00525 1075 Pfam Filament-like plant protein, long coiled-coil 51 932 IPR008587 -
Lsi10g00525 1075 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 29 1068 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00525 - - - csv:101209560 1771.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01729 Lsi-Chr4:24643241 Lsi10g00525 Lsi-Chr10:7503788 1.20E-76 dispersed
Lsi08g00434 Lsi-Chr8:11879529 Lsi10g00525 Lsi-Chr10:7503788 4.80E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g386 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag1122 . . Lsi10g00525 . . . Blo04g00480 . . Bda14g00510 Bpe15g00902 . Bma03g00512 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi7g1036 Blo04g01055 . . . . . . . . . Cma02g00610 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g00227 . . . . . . . . . . . . . . . . . . Bhi10g01786 Tan05g1629 . . . . . Cla02g01203 Cam02g1279 Cec02g1295 Cco02g1328 Clacu02g1266 Cmu02g1229 Cre02g1543 Lsi10g00525 Csa02g01425 . Cme11g00344
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003264 2 4 2 1 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 3 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00525 Lsi_Chr10 FPKM 44.917969 46.018036 0.809629 0.680244 1493.206299 1105.126099 1314.614014 0.906009 0.302363 0.566656