Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00526 ATGAAAATTGGTGGTGGAGTGGTCTGTGGAAGTCCACGCGCCGCCGCTCTCCCTTCACTGCTTCTCCGCCGCCGTGGAGTCCCAGTTCGCTGCTCTACGTCTTCCTCTACTTCCGACCATGTATCATTCATCAAAGATATTGCTGCTACTGAGCCTCCTCAGCATCTGTTTCATTTGCTGAAAATGCTGAAGACTAGAGGTGCATCCATAATTTCTCCTGGAGCAAAGCAAGGGATTATTCCTCTCGTCATTCCACTGGCAAAAAACGGATCTGGTACTACAACTGCACTGCTGCGCTGGCCTACAGCACCCGCTGGACTTCTAGTTGAAGAAGATGCTAGAGGAAGTGGAGATCAAAATGATGAGCTATTTCTTGCAGCAGCTGATGCTGGGCAGAAACTTTATGGAAGGGGTGATTTTTCTGAATCTCGGATCACAAACTTAGATGGATATCTGCTGAAAAAGTTTGTTCTGACAATCTTTCAATCTCAGGTTGGGTTGTTTCCAGATGTCATAGAACGTAAAATATTGCGCCATTTTGAGGAAGGTGACCTTGTTTCAGCTCTGGTAACCGGAGAATTCTATACTAAAAAGGAGCACTTCCCAGGATTTGCACGACCATATGTATTCAATGCAGAGGTTCTGCTAAAGGTGGGACGTAAAACTGAAGCTAAGGATGCTGCGAGGGGAGCCTTAAAATCACCATGGTGGACCCTAGGCTGTAAGTATGAGGAAGTTGCTAATATTGCACAATGGGAAGATGAGCAAATTGAATATTTCAAAGAAAAGGTCACCGAAGAAGGAAAGCTAGAGGATCTCAAGAAGGGAAAGGCTCCTGCGCAGGTTGCCTTGGACCAAGCTGCCTTTCTATTGGATCTAGCTTCTATTGATGGGACTTGGGACAACTCTGTGGAGCGTATTGCTCAATGTTATGAAGAGGCAAGCCTGCATGAAATTGCACGATTCGTACTTTACAGAGACTGA 984 45.93 MKIGGGVVCGSPRAAALPSLLLRRRGVPVRCSTSSSTSDHVSFIKDIAATEPPQHLFHLLKMLKTRGASIISPGAKQGIIPLVIPLAKNGSGTTTALLRWPTAPAGLLVEEDARGSGDQNDELFLAAADAGQKLYGRGDFSESRITNLDGYLLKKFVLTIFQSQVGLFPDVIERKILRHFEEGDLVSALVTGEFYTKKEHFPGFARPYVFNAEVLLKVGRKTEAKDAARGALKSPWWTLGCKYEEVANIAQWEDEQIEYFKEKVTEEGKLEDLKKGKAPAQVALDQAAFLLDLASIDGTWDNSVERIAQCYEEASLHEIARFVLYRD 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7509978 7514571 - Lsi10G005260.1 Lsi10g00526 672083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00526 327 PANTHER PROTEIN IN CHLOROPLAST ATPASE BIOGENESIS, CHLOROPLASTIC 107 327 - -
Lsi10g00526 327 PANTHER CYCLIN DELTA-3 7 107 IPR045287 -
Lsi10g00526 327 PANTHER CYCLIN DELTA-3 107 327 IPR045287 -
Lsi10g00526 327 PANTHER PROTEIN IN CHLOROPLAST ATPASE BIOGENESIS, CHLOROPLASTIC 7 107 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00526 - - - csv:101209805 560.836
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g387 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00526 . . . . . . . . . . . . Cmo02g00532 . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi7g1037 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0137 . . Chy11g00226 . . . . . . . . Bma06g00378 Sed05g3459 . . . . . . . . Bhi10g01784 Tan05g1627 Cmetu11g1875 . Hepe10g1433 . . Cla02g01204 Cam02g1280 Cec02g1296 Cco02g1329 Clacu02g1267 Cmu02g1230 Cre02g1544 Lsi10g00526 Csa02g01426 . Cme11g00343
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010267 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00526 Lsi_Chr10 FPKM 8.436121 10.24554 8.115273 9.932941 8.920036 8.545583 8.815606 10.551646 9.490382 10.638631