Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00528 ATGTTATCGAGCAGTTTATGGGAACTTCCCTCTTCCTCTGCCATTTTGTACATCTTTCTGACGCTATTCTCATTCCTTATCTCCATTTCAGTCGCTTGCTTTAATGGAAATTGCCAGGTTCTGGAAGCTTGTACGGCTGCCACGGATTGTGGGTCAGGTCTCTACTGTGGGAATTGCCCTGCTTCTGGCAAGAATCAACCTGTTTGTACTAGAGGCCAAGCAACCGTTCCCACTTCTGTTATTAATGGTTTGCCATTCAACAAGTACACTTGGTTGGTGACTCATAACTCGTTCAGTATTGTTGATGCTCCGGCTTTGGATGGAGTTCAGAGATTGACATTTTACAATCAAGAGGATACTGTAACTAATCAATTAAGAAATGGAGTGAGGGGACTGATGCTGGATATGTATGATTTCGGAAACGATATCTGGCTCTGCCATTCATTCAGGGGACAATGTTTCAACTTCACTGCTTTTGTAATCAATCTTCTTCTTCCATCTTCCACTTTTTTCCAATTTATGATGTTGAAAATGTTGTTTGGCCTTTTTGGTTCTGTAAGCAAGATTGTGACTATTGACATTTGGTGTTCTCAGCAACCAGCAATTAACACATTAAGAGAAGTGGAAGCATTCTTAACTGAGAACCCAACTGAAATTGTGACCATTATAATTGAAGATTATGTGCATACTCCAAAGGGGTTGACAAATCTTTTCACTAGTGCTGGGCTGGACAAATACTGGTTTCCAGTATCCAACATGCCAAAGAAGGGAGAAGATTGGCCTACAGTCACTAACATGGTGCAACAGAATCACCGGCTTCTTGTTTTCACATCCATCGCATCGAAGGAAGCCGAGGAAGGAATTGCTTACCAGTGGAAGTACATGTTGGAAAATGAACCTGGTGATCCTGGAGTTGTACCTGGTTCATGCCCGAATCGAAGAGAATCAAAATCACTGAGATCAAGAAGCTCTTCTCTATTCCTCCAGAATTACTTCCCAACATATCCAGTGGAAGCTGAGGCTTGCAAGGAGCATTCAGCTCCACTTTTTAATATGATCTCCACATGCTATAAAGCATCTGGGAATATCTTGCCAAACTTCTTGGCTGTTAACTTTTACATGAGAAGTGAAGGCGGAGGTGTCTTTGACGCTTTAGATAAGATAAACGGCCAGACGCTATGTGGGTGTAGCACACTTGCTGCCTGCCAGGCGGGAGCTCCTCCTGGTACTTGCAAGAGTATTCCAGCACCTAACACTGGCTCAATGAGCAGTACCTCTGGTAGCTTTACTGGGTCTGTTCAATTCTCGAAATCATCAGCTATGACAGTCCATTTGCCGAATCATTTGGTTCTCTGGTTTTTCTACTTACCATTGTTGGCATTCTTAAAAACTACAATCAACACTCATCTAATTGGATTTTGA 1422 42.48 MLSSSLWELPSSSAILYIFLTLFSFLISISVACFNGNCQVLEACTAATDCGSGLYCGNCPASGKNQPVCTRGQATVPTSVINGLPFNKYTWLVTHNSFSIVDAPALDGVQRLTFYNQEDTVTNQLRNGVRGLMLDMYDFGNDIWLCHSFRGQCFNFTAFVINLLLPSSTFFQFMMLKMLFGLFGSVSKIVTIDIWCSQQPAINTLREVEAFLTENPTEIVTIIIEDYVHTPKGLTNLFTSAGLDKYWFPVSNMPKKGEDWPTVTNMVQQNHRLLVFTSIASKEAEEGIAYQWKYMLENEPGDPGVVPGSCPNRRESKSLRSRSSSLFLQNYFPTYPVEAEACKEHSAPLFNMISTCYKASGNILPNFLAVNFYMRSEGGGVFDALDKINGQTLCGCSTLAACQAGAPPGTCKSIPAPNTGSMSSTSGSFTGSVQFSKSSAMTVHLPNHLVLWFFYLPLLAFLKTTINTHLIGF 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7549052 7553953 + Lsi10G005280.1 Lsi10g00528 672085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00528 473 PANTHER UNCHARACTERIZED 18 160 - -
Lsi10g00528 473 Gene3D Phosphatidylinositol (PI) phosphodiesterase 76 376 IPR017946 GO:0006629|GO:0008081
Lsi10g00528 473 PANTHER PI-PLC X DOMAIN PLANT-LIKE PROTEIN 197 428 - -
Lsi10g00528 473 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 85 149 - -
Lsi10g00528 473 SUPERFAMILY PLC-like phosphodiesterases 77 393 IPR017946 GO:0006629|GO:0008081
Lsi10g00528 473 PANTHER UNCHARACTERIZED 197 428 - -
Lsi10g00528 473 CDD PI-PLCc_At5g67130_like 77 389 - -
Lsi10g00528 473 PANTHER PI-PLC X DOMAIN PLANT-LIKE PROTEIN 18 160 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00528 - - - bhj:120088734 827.009
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi01g00750 Lsi10g00528 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00216 Lsi-Chr5:2946003 Lsi10g00528 Lsi-Chr10:7549052 2.21E-120 dispersed
Lsi01g00970 Lsi-Chr1:7912330 Lsi10g00528 Lsi-Chr10:7549052 1.06E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g394 . Blo15g00750 Bda06g01073 . Bpe07g00375 . . Bma12g00441 . . Cma02g00450 . Car02g00306 . . . . . . . . . . . . . . . . . . Cone12ag1084 . Cone3ag1181 Cone10ag0992 Lsi10g00528 . . . . . . . . . . . . Cmo02g00459 . . . . . Cpe14g00291 Cpe01g00437 . . . . . . . . . . . . . . . . . Cme11g00541
Vvi7g1044 . . Bda04g00244 . Bpe06g00194 Bpe15g00332 . Bma15g01052 Cmo03g00834 . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0135 Cone12ag0130 Lsi01g00750 . Chy11g00223 . Blo05g00628 . . . . . . . Sed05g3457 . . . . Car03g00732 . . . Bhi10g01778 Tan05g1623 Cmetu11g0358 . Hepe10g1436 . . Cla02g01206 Cam02g1284 Cec02g1299 Cco02g1331 Clacu02g1269 Cmu02g1232 Cre02g1546 Lsi10g00528 Csa02g01429 Chy02g00709 Cme11g00340
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012105 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 3 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00528 Lsi_Chr10 FPKM 79.616997 90.475204 348.139435 349.182007 177.065338 176.340393 166.711792 17.185911 15.112836 15.144462