Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00532 ATGGAGTGGGTTCGAGGAGACCAACTCGGCCGTGGAAATTTTGCTACAATCAATTTAGCAAAATTGATAAAAGGGTTTGATCAGTTCCCGCCATTAATGGCCGTGAAATCCTCTGTTTCTTCTCTATCCTCTGTTTCGCTCAAGAACGAGAAGCAAATTCTGGATCGAATTGGGTTTTTCCCACAGATTGTTACTTGTTTTGGCGATGGATTCAGTGTTGAAAGTGATGGGGAGAAGTGTTATAATCTATTCTTGGAGTATGCCAATGGCGGAAGTCTTGCGGATGTTGTGAGAATCCATGGCGGTGGGTTGCCGGAATTCGATGTTCGAAAGTACACGAGAGCGATTCTTTGTGGACTCCGGCATGTTCATGGCAATGGATTTGTTCATTGTGATTTGAAACTTTCGAATGTTTTGGTTTTTGGGAATGGTGATGTTAAGATCGCTGATTTTGGGCTTGCTAAAGCGGCTGGAAAAATTGCAGCGGCCGAAACAGAGAATAAATTTGAGTGGAGAGGGACTCCGATGTATATGTCGCCGGAGACTGTTAACGGTGGTGAGTATGATCCGCCGTGTGATATTTGGGCGTTGGGTTGCGCCGTCGTGGAGATGGTGGCGGGAAAGCCGGCGTGGAGGGTTGGGCCGGAAACGGATATATTTGGGCTGATGATGAGGATTGGAGTCGGAGATAAAGTACCACAGATACCGGACAATTTATCGGCGGAGGGGAAAGATTTTATCCGGCGGTGTTTCGTCAAGGATCCGAGGAAGAGATGGACGGCGGAGATGCTTTTGAACCACCCATTCGTCGCCGGTGCCGATGATACTGTTACATTGAAGGAAGCAGAAGTGGCGACGGAGTCGCCGACGGGTCCTTTCGACTTCCCGGAATTCGTTTGTTCCGACCAAGGTTCTGAAGACTGGAGTTTCTGTTCTAATTCGTCGCCGGAGATTTTGAGTAGGGTCCGGCAGCTGGTGACGGGGAAGCCTTTGGATTGGTCTGTGATGGATAGTTGGGTCACAGTGAGGTGA 1032 48.74 MEWVRGDQLGRGNFATINLAKLIKGFDQFPPLMAVKSSVSSLSSVSLKNEKQILDRIGFFPQIVTCFGDGFSVESDGEKCYNLFLEYANGGSLADVVRIHGGGLPEFDVRKYTRAILCGLRHVHGNGFVHCDLKLSNVLVFGNGDVKIADFGLAKAAGKIAAAETENKFEWRGTPMYMSPETVNGGEYDPPCDIWALGCAVVEMVAGKPAWRVGPETDIFGLMMRIGVGDKVPQIPDNLSAEGKDFIRRCFVKDPRKRWTAEMLLNHPFVAGADDTVTLKEAEVATESPTGPFDFPEFVCSDQGSEDWSFCSNSSPEILSRVRQLVTGKPLDWSVMDSWVTVR 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7625178 7626209 + Lsi10G005320.1 Lsi10g00532 672089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00532 343 SUPERFAMILY Protein kinase-like (PK-like) 3 292 IPR011009 -
Lsi10g00532 343 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Lsi10g00532 343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Lsi10g00532 343 Gene3D Transferase(Phosphotransferase) domain 1 2 293 - -
Lsi10g00532 343 SMART serkin_6 3 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00532 343 CDD STKc_MAPKKK 2 270 - -
Lsi10g00532 343 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 317 - -
Lsi10g00532 343 Pfam Protein kinase domain 5 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00532 343 ProSiteProfiles Protein kinase domain profile. 3 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00532 343 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 317 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi01g00972 Lsi10g00532 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00987 Lsi-Chr6:19885569 Lsi10g00532 Lsi-Chr10:7625178 2.39E-48 dispersed
Lsi10g00114 Lsi-Chr10:1804629 Lsi10g00532 Lsi-Chr10:7625178 5.07E-54 dispersed
Lsi10g00532 Lsi-Chr10:7625178 Lsi01g01994 Lsi-Chr1:26696157 3.72E-64 dispersed
Lsi01g00972 Lsi-Chr1:7933161 Lsi10g00532 Lsi-Chr10:7625178 2.11E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83947 PF00069 Pkinase 2.40E-50 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00532 - - csv:101214756 622.083