Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00533 ATGGCGGACGAACAGCCCTCAGCCGCTAATCGGCGGAGGAGCCGAGGATCTGAGGCCGCTGCCCGACTTACGGCTCTCGAACGTCTCAAAGCCATCCGCAGCGGTGGCCGTCGATCGGAAGCTGGTGCTTTCCAAGTGAAGTTAGAAAACCCTATCTACGATACGATTCCGGAGGATGAGTATGATGCTCTCGTTGCAAAGCGTCGCGAAGAAGCCCGAGGGTTTATTGTTGATGACGACGGTCTTGGATATGGAGATGAAGGTGAGGAAGAGGATTGGTCGAAAGCTGGCGTTTGTTCCTCTGATGAGTCTGACGGTGAGCTCGATAAACCTAAGAAGAGGAAAGTGGAGAAGAAAGACGCGCAACCGAAGAAGCCCTCTTCTTCTTCTCTATCGGCGGCGGCAGCGATGATGGGGAAACAAAAACTTTCTTCGATGTTTACTTCATCGATCTTCAGGAAAACGGCTAAAGACGATAAGGCTAAAGGATTGGCGAGTGATAGTATTGTGGATGATGTGATTGCGGAATTTGCGCCAGATGAGACTGATAGAGAGAGGCGTAGAAAGGGGCAAATTGGAGCTATACCGATTTCGAGGACTGTTCCGCCTGTTCCTGCTGTGAAGTCCGAGGGATTAACTTCTCAGAGTCTTAATTTGACTGGCGGGTCTGAATTGATTAAGGATACTGAAAATGGGAACTCTGGAATGACCAAGGTTGTTACAAACAGTGACTTGGAACCTGTTAGAGCTGGTGTAGAGGTCCAGGGAAATGGTGAAACTAAGGAATTTGATGCGAAGGAGGACTTGAATTCTCAAATCAACCTGGATCCGGTTGGGCAATCACCTAATTCTTCGATCAAGGAAGATGTAACTGCAGATAGTATGCCAATTATGGTTGAAACGAAGGCAGAACCGTTAGTGAAGAAGGAGCCGGTGAGTACTTTGAATGCTAAGATTAGCAATGAAAGAGACCCAGCTTTGAGTGCTACTGCGGGATGGCAAGCAGTAAGAAGTGAAGGGAGTGGAAGTGTTAATTCTGCAGCAGAAATTGCTGAAGAGAAATCCGATTTTGACATTGACGCTGATGGCTCTCTTCCTTTCTATATCGTCAAAGCTGGGGATACGTTCCACAGTTGTTGTGTGGTTGTGAAAAATATGCAAAGATGCATATATGCCATTCCAAGTGCTGCTTTTTTTCATTCGGATGAGATGTTGGAGCTTCAGAAGGATGCTGAACAGTCTCAGCTTTCTCCTGCAGATCTGCGTGCCAAATTGCAAGAAGTGACTGCAGGATTAAAAAATGAAATGGCTAAGCAGTTGCTAGATCTCAATGTTTCAACATTTAGCATGACACCGGTTAAGAGGAAATATGCATTTGAGCGTCAAGACATACCTGCGGGGGAAAATTATGCGCTTAAGATTAATTACCCATTTAAGTACCCCCCACTTCCCGCTGATCTAAAAGGAGAATCGTTCTGTGCTCTTTTAGGAACACATCGCAGTGCCTTAGAGCTTCTCCTCATTAAAAGGAAAATTAAGGGCCCTTCCTGGTTGTCAATTTCAAAATTTTCCTCCTGTCCTGCTTCTCAACGAGTGAGCTGGTGCAAGTTTGAGGTGATAGTTGACTCTCCAAAAGATGTTCAAACTTCAACTTCATCAAGCAAAACCTTGGAGATTCCTCCTATGATTGTCACTGCAATACACATAAAGACCATCATTAATGAAAGACAGAATGCCAACGAAATTGTGTCTGCATCTGTTATATGCTGTCAAAGAGCGAAGATTGACGGTCCCATGTTGGCCACAGAATGGAAAAAGCCTGGTATGCTTAGGCATTTTACCATCATCCGTAAGCTTGATGGAGGCATATTTCCTATGGGATTTGCTAAAGAGTCCGCAGATAGAAATTTGAAGGCTGGATCAAATGTTCTAATCTGCGAGGGCAATGAAAGGGCATTGTTGAATCGGTTAATGATTGAATTATTCAAATTGGATAGTGATGTGCTGGTTGGGCACAATATCTCTGGGTTTGACCTAGATGTTCTTCTCCATCGAGCCCAGGGGGAAACTAAACTTCCCCCCTCAGCGCTCACACACCCCAAAGAAAAAGGAGAAGAAGAATATGGCTACCATGATCCATTAAGTAGATACAAAACATTAGATCCTCCTTCCCGAAGAACTCATTTGCCTTCAAACTTCCAATTTTGCCGAGTACCAAGCAGCATGTGGTCCAAAATAGGTCGCCTTAAGCGGTCTGTTATGCCTAAACTTGGAAAAGGAGGGAGCATTTTTGGGTCTGGGGCAAGTCCAGGACTCATGTCTTGCATTGCTGGTCGACTCTTATGTGATACATATTTGTCTTCCCGTGACCTATTGAAGGAGATAAGTTATTCTTTGACAGAGCTGGCAAAGACTCAACTTAATAAGGACCGCAAGGAAGTCACTCCTCATAAAATTCCAAAAATGTATCAAGCATCAGAGTCTCTCTTGAACCTGATTGAATATGGTGAGACAGATGCATGGTTGTCATTGGAACTCATGTTTCATTTAAGTGTTCTTCCCCTTACTCGACAATTAACTAATATCAGTGGTAATCTCTGGGGAAGAAGCCTACAGGGTGCTAGGGCCCAGAGAGTAGAGTATCTCTTACTTCATGCATTCCATGCCAAAAAATATATTGTCCCCGACAAGACTTCATCTTATGTGAAGGAAAAAAAGATGGTAAAAAAGAGAACGAATCATAGTTCTGAGGAAAAAAATGTTGATGAATTTGATTTAGATGATGCAAATGTAGAAGCTCCCAATACTGAAAGTGGAAAAGGCAAAAAGGGATCCTCCTATTCAGGTGGGCTAGTCTTGGAGCCAAAGCGAGGTTTATATGATAAGTATGTATTGCTCCTGGACTTCAACAGTCTGTACCCTTCCATCATTCAGGAATATAATATTTGCTTCACCACTGTTGAAAGATCTCCAGATGGTGTTGTTCCTCTACTGCCATCTAGTAAAGTGACTGGAGTTCTTCCTGAGTCACCAGAGTTGCCCTCACGAATGATTGGTTCATGTCAGGCGACTTATGTCCATGTTTTACTAACTTGGTTGCTAAAAAATCTGGTTCAGAGAAGAAGAATGGTGAAGTCATGGATGAAGAATGCAACTGGTCTCAAGCTTCAGCAACTTGACATTCAGCAGCAGGCACTAAAGCTCACTGCCAACAGTATGTATGGATGTCTAGGGTTTTCTAATTCAAGGTTTTATGCAAAACCACTAGCAGAGCTTATTACTTCACAAGGAAGAGAAATACTGCAGAGCACTGTTGATCTTGTCAAGAATAATCTGAACCTGGAGGTAATTTATGGCGATACAGATTCAATAATGATTCATAGTGGACTGGATGATGTTGGCAAAGTGAAAGCAATTGCAGGAAAAGTTATACAAGAGTTTCCAGTCTGTTCCTTTATGTATCATGTACACAAATTTAATGTAACAAAGAAAAGGGGAAAAAAAGAAAAGAAATTTAACTCTATCCATGTTTTGATAATTTCCATTGAAAAAAGCTCGAAAATATGTAGCTTAAGACAACAGAAATTTTCCTTTGCAAATCTTTCCACTCGTTATACCAAGTCTCCATGTGAGTTATTCTTTCACGTTAACAAAAAGTACAAGTGCTTAGAAATCGATCTCGATGGTTTGTATAAGAGAATGTTGCTTCTCAAAAAAAAGAAATATGCTGCTGTAAAGTTGCAGTTTAAGGACGGAATGCCATATGAGGTTATTGAGCGTAAGGGTCTTGATATGGTTCGTCGTGACTGGAGCTTATTGTCAAAGGAATTAGGTGATTTCTGCTTGAATCAAATATTGTCTGGAGGGTCGTGCGAGGATGTCATTGAATCAATACATGACTCACTTATGAAGATACAAGAGGATATGAGAAAAGGGCAAGTTGCACTTGAGAAATATATCATCACGAAGACATTGACTAAGCCACCTGAAGCTTATCCTGATGCCAGAAACCAACCACATGTTCAAGTTTGTGGTAGTGGTTTGATATTTACTCCGAGATATGATGCTAGAACCATGGTTGGGTCTACTTCTGGTGGTTCTACAAGCATTGCTCAGCGGGCTAGACATCCTGATGAATTGAAAAAAGAGGATGGAAAATGGATGATTGACATCGAATACTACCTTTCACAGCAGATTCACCCTGTGGTTTCTCGTCTATGTGCCTCAATTCAGGGCACCAGCCCAGAACGCTTGGCTGACTGTCTGGGGCTTGATTCATCAAAGGTTTCCTCAGTTTCTAATATTGTATTTGCACTGACGTACTGTGCACTTAATTATGTCCAGTTCCAGATCAGATCAAGTGAAGTTTCCCGAAGCGATGTCTCCACTTCCCTCCTGTGTTCTGTAAATGATGAAGAAAGGTATCAGGGATGCATACCACTGACATTAACTTGCCCCAGCTGTTTTGGTACTTTTACTTGTCCTGCTATCTTTAGTTCTATATACAAATCTACAGATGGAAAGCAAGAAAAGCCAGTTGATGAACCTACAAGCAAATTTTGGAATAATTTGAATTGTCCAAAATGTCATGATGAAGCTAATGCGGGTAGAATGACTCCTGGAATGATTGCCAACCAGGTAAAAAGGCAAGCAGATAGGTTCATTTCAATGTATTATAATGGCTTAATGATGTGTGATGATGAAACCTGCAAATATTCCACACGTGCCGTCAATCTTCGAGTTATGGGCGACTCCGAGAAAGGAACCATCTGCCCAAACTATCCCCACTGCAATGGGCATCTAGTAAGGAAGGTATTACATCATCCAACTTTGAAGTACTTTAAGCCTACATATTTTGATCTCTCCTTAAGAGTTATGGTTCTAATCATGAATGTTCTTGTATATCAGTACACAGAAGCTGATTTGTACAAGCAGCTTTCGTATTTTAGTCACATTTTGGATACCGAACGATGTATGGAAAAGTTGGAGGTTCATGCAAGGGTAACATTAGAGAAAGAAATGGCGAAAATTCGGCCAATAGTCGAGTTAGCTGCATCGACAATTCAAAGCATTCGGGATCGCAGTGCATATGGTTGGATGCAGTTGCAAAGTTTTGTGGTAACATTTTGA 5130 42.12 MADEQPSAANRRRSRGSEAAARLTALERLKAIRSGGRRSEAGAFQVKLENPIYDTIPEDEYDALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGVCSSDESDGELDKPKKRKVEKKDAQPKKPSSSSLSAAAAMMGKQKLSSMFTSSIFRKTAKDDKAKGLASDSIVDDVIAEFAPDETDRERRRKGQIGAIPISRTVPPVPAVKSEGLTSQSLNLTGGSELIKDTENGNSGMTKVVTNSDLEPVRAGVEVQGNGETKEFDAKEDLNSQINLDPVGQSPNSSIKEDVTADSMPIMVETKAEPLVKKEPVSTLNAKISNERDPALSATAGWQAVRSEGSGSVNSAAEIAEEKSDFDIDADGSLPFYIVKAGDTFHSCCVVVKNMQRCIYAIPSAAFFHSDEMLELQKDAEQSQLSPADLRAKLQEVTAGLKNEMAKQLLDLNVSTFSMTPVKRKYAFERQDIPAGENYALKINYPFKYPPLPADLKGESFCALLGTHRSALELLLIKRKIKGPSWLSISKFSSCPASQRVSWCKFEVIVDSPKDVQTSTSSSKTLEIPPMIVTAIHIKTIINERQNANEIVSASVICCQRAKIDGPMLATEWKKPGMLRHFTIIRKLDGGIFPMGFAKESADRNLKAGSNVLICEGNERALLNRLMIELFKLDSDVLVGHNISGFDLDVLLHRAQGETKLPPSALTHPKEKGEEEYGYHDPLSRYKTLDPPSRRTHLPSNFQFCRVPSSMWSKIGRLKRSVMPKLGKGGSIFGSGASPGLMSCIAGRLLCDTYLSSRDLLKEISYSLTELAKTQLNKDRKEVTPHKIPKMYQASESLLNLIEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAKKYIVPDKTSSYVKEKKMVKKRTNHSSEEKNVDEFDLDDANVEAPNTESGKGKKGSSYSGGLVLEPKRGLYDKYVLLLDFNSLYPSIIQEYNICFTTVERSPDGVVPLLPSSKVTGVLPESPELPSRMIGSCQATYVHVLLTWLLKNLVQRRRMVKSWMKNATGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVKNNLNLEVIYGDTDSIMIHSGLDDVGKVKAIAGKVIQEFPVCSFMYHVHKFNVTKKRGKKEKKFNSIHVLIISIEKSSKICSLRQQKFSFANLSTRYTKSPCELFFHVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGMPYEVIERKGLDMVRRDWSLLSKELGDFCLNQILSGGSCEDVIESIHDSLMKIQEDMRKGQVALEKYIITKTLTKPPEAYPDARNQPHVQVCGSGLIFTPRYDARTMVGSTSGGSTSIAQRARHPDELKKEDGKWMIDIEYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKVSSVSNIVFALTYCALNYVQFQIRSSEVSRSDVSTSLLCSVNDEERYQGCIPLTLTCPSCFGTFTCPAIFSSIYKSTDGKQEKPVDEPTSKFWNNLNCPKCHDEANAGRMTPGMIANQVKRQADRFISMYYNGLMMCDDETCKYSTRAVNLRVMGDSEKGTICPNYPHCNGHLVRKVLHHPTLKYFKPTYFDLSLRVMVLIMNVLVYQYTEADLYKQLSYFSHILDTERCMEKLEVHARVTLEKEMAKIRPIVELAASTIQSIRDRSAYGWMQLQSFVVTF 1709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7632866 7644989 + Lsi10G005330.1 Lsi10g00533 672090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00533 1709 MobiDBLite consensus disorder prediction 76 136 - -
Lsi10g00533 1709 MobiDBLite consensus disorder prediction 907 947 - -
Lsi10g00533 1709 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Lsi10g00533 1709 Gene3D - 370 546 - -
Lsi10g00533 1709 SUPERFAMILY Ribonuclease H-like 446 888 IPR012337 -
Lsi10g00533 1709 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 1215 1708 - -
Lsi10g00533 1709 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 733 1146 - -
Lsi10g00533 1709 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 13 687 - -
Lsi10g00533 1709 Gene3D - 731 923 IPR036397 GO:0003676
Lsi10g00533 1709 Gene3D - 560 703 IPR036397 GO:0003676
Lsi10g00533 1709 MobiDBLite consensus disorder prediction 1 18 - -
Lsi10g00533 1709 Pfam DNA Polymerase alpha zinc finger 1469 1705 IPR015088 GO:0003887|GO:0006260
Lsi10g00533 1709 MobiDBLite consensus disorder prediction 907 921 - -
Lsi10g00533 1709 Gene3D Helix hairpin bin 1028 1077 - -
Lsi10g00533 1709 Gene3D Palm domain of DNA polymerase 933 1160 IPR023211 -
Lsi10g00533 1709 TIGRFAM pol2: DNA polymerase (pol2) 734 1146 - -
Lsi10g00533 1709 Gene3D Palm domain of DNA polymerase 1199 1253 IPR023211 -
Lsi10g00533 1709 PRINTS DNA-directed DNA-polymerase family B signature 1116 1124 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lsi10g00533 1709 PRINTS DNA-directed DNA-polymerase family B signature 964 977 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lsi10g00533 1709 PRINTS DNA-directed DNA-polymerase family B signature 1063 1075 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lsi10g00533 1709 MobiDBLite consensus disorder prediction 1 20 - -
Lsi10g00533 1709 SUPERFAMILY DNA/RNA polymerases 891 1425 IPR043502 -
Lsi10g00533 1709 MobiDBLite consensus disorder prediction 88 124 - -
Lsi10g00533 1709 Gene3D - 387 513 - -
Lsi10g00533 1709 CDD DNA_polB_alpha_exo 560 858 - -
Lsi10g00533 1709 Gene3D - 1263 1435 IPR042087 -
Lsi10g00533 1709 SMART polmehr3 560 1130 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lsi10g00533 1709 Pfam DNA polymerase family B, exonuclease domain 375 687 IPR006133 -
Lsi10g00533 1709 Pfam DNA polymerase family B 1215 1409 IPR006134 GO:0000166|GO:0003677
Lsi10g00533 1709 Pfam DNA polymerase family B 867 1145 IPR006134 GO:0000166|GO:0003677
Lsi10g00533 1709 CDD POLBc_alpha 940 1425 IPR045846 GO:0003887|GO:1902975
Lsi10g00533 1709 Gene3D DNA Polymerase alpha, zinc finger 1627 1694 IPR038256 -
Lsi10g00533 1709 Gene3D DNA Polymerase alpha, zinc finger 1468 1622 IPR038256 -
Lsi10g00533 1709 ProSitePatterns DNA polymerase family B signature. 1118 1126 IPR017964 GO:0000166|GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00533 Lsi-Chr10:7632866 Lsi11g00572 Lsi-Chr11:6055992 9.19E-25 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00533 K02320 - zju:107424534 1996.48