Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi10g00533 | ATGGCGGACGAACAGCCCTCAGCCGCTAATCGGCGGAGGAGCCGAGGATCTGAGGCCGCTGCCCGACTTACGGCTCTCGAACGTCTCAAAGCCATCCGCAGCGGTGGCCGTCGATCGGAAGCTGGTGCTTTCCAAGTGAAGTTAGAAAACCCTATCTACGATACGATTCCGGAGGATGAGTATGATGCTCTCGTTGCAAAGCGTCGCGAAGAAGCCCGAGGGTTTATTGTTGATGACGACGGTCTTGGATATGGAGATGAAGGTGAGGAAGAGGATTGGTCGAAAGCTGGCGTTTGTTCCTCTGATGAGTCTGACGGTGAGCTCGATAAACCTAAGAAGAGGAAAGTGGAGAAGAAAGACGCGCAACCGAAGAAGCCCTCTTCTTCTTCTCTATCGGCGGCGGCAGCGATGATGGGGAAACAAAAACTTTCTTCGATGTTTACTTCATCGATCTTCAGGAAAACGGCTAAAGACGATAAGGCTAAAGGATTGGCGAGTGATAGTATTGTGGATGATGTGATTGCGGAATTTGCGCCAGATGAGACTGATAGAGAGAGGCGTAGAAAGGGGCAAATTGGAGCTATACCGATTTCGAGGACTGTTCCGCCTGTTCCTGCTGTGAAGTCCGAGGGATTAACTTCTCAGAGTCTTAATTTGACTGGCGGGTCTGAATTGATTAAGGATACTGAAAATGGGAACTCTGGAATGACCAAGGTTGTTACAAACAGTGACTTGGAACCTGTTAGAGCTGGTGTAGAGGTCCAGGGAAATGGTGAAACTAAGGAATTTGATGCGAAGGAGGACTTGAATTCTCAAATCAACCTGGATCCGGTTGGGCAATCACCTAATTCTTCGATCAAGGAAGATGTAACTGCAGATAGTATGCCAATTATGGTTGAAACGAAGGCAGAACCGTTAGTGAAGAAGGAGCCGGTGAGTACTTTGAATGCTAAGATTAGCAATGAAAGAGACCCAGCTTTGAGTGCTACTGCGGGATGGCAAGCAGTAAGAAGTGAAGGGAGTGGAAGTGTTAATTCTGCAGCAGAAATTGCTGAAGAGAAATCCGATTTTGACATTGACGCTGATGGCTCTCTTCCTTTCTATATCGTCAAAGCTGGGGATACGTTCCACAGTTGTTGTGTGGTTGTGAAAAATATGCAAAGATGCATATATGCCATTCCAAGTGCTGCTTTTTTTCATTCGGATGAGATGTTGGAGCTTCAGAAGGATGCTGAACAGTCTCAGCTTTCTCCTGCAGATCTGCGTGCCAAATTGCAAGAAGTGACTGCAGGATTAAAAAATGAAATGGCTAAGCAGTTGCTAGATCTCAATGTTTCAACATTTAGCATGACACCGGTTAAGAGGAAATATGCATTTGAGCGTCAAGACATACCTGCGGGGGAAAATTATGCGCTTAAGATTAATTACCCATTTAAGTACCCCCCACTTCCCGCTGATCTAAAAGGAGAATCGTTCTGTGCTCTTTTAGGAACACATCGCAGTGCCTTAGAGCTTCTCCTCATTAAAAGGAAAATTAAGGGCCCTTCCTGGTTGTCAATTTCAAAATTTTCCTCCTGTCCTGCTTCTCAACGAGTGAGCTGGTGCAAGTTTGAGGTGATAGTTGACTCTCCAAAAGATGTTCAAACTTCAACTTCATCAAGCAAAACCTTGGAGATTCCTCCTATGATTGTCACTGCAATACACATAAAGACCATCATTAATGAAAGACAGAATGCCAACGAAATTGTGTCTGCATCTGTTATATGCTGTCAAAGAGCGAAGATTGACGGTCCCATGTTGGCCACAGAATGGAAAAAGCCTGGTATGCTTAGGCATTTTACCATCATCCGTAAGCTTGATGGAGGCATATTTCCTATGGGATTTGCTAAAGAGTCCGCAGATAGAAATTTGAAGGCTGGATCAAATGTTCTAATCTGCGAGGGCAATGAAAGGGCATTGTTGAATCGGTTAATGATTGAATTATTCAAATTGGATAGTGATGTGCTGGTTGGGCACAATATCTCTGGGTTTGACCTAGATGTTCTTCTCCATCGAGCCCAGGGGGAAACTAAACTTCCCCCCTCAGCGCTCACACACCCCAAAGAAAAAGGAGAAGAAGAATATGGCTACCATGATCCATTAAGTAGATACAAAACATTAGATCCTCCTTCCCGAAGAACTCATTTGCCTTCAAACTTCCAATTTTGCCGAGTACCAAGCAGCATGTGGTCCAAAATAGGTCGCCTTAAGCGGTCTGTTATGCCTAAACTTGGAAAAGGAGGGAGCATTTTTGGGTCTGGGGCAAGTCCAGGACTCATGTCTTGCATTGCTGGTCGACTCTTATGTGATACATATTTGTCTTCCCGTGACCTATTGAAGGAGATAAGTTATTCTTTGACAGAGCTGGCAAAGACTCAACTTAATAAGGACCGCAAGGAAGTCACTCCTCATAAAATTCCAAAAATGTATCAAGCATCAGAGTCTCTCTTGAACCTGATTGAATATGGTGAGACAGATGCATGGTTGTCATTGGAACTCATGTTTCATTTAAGTGTTCTTCCCCTTACTCGACAATTAACTAATATCAGTGGTAATCTCTGGGGAAGAAGCCTACAGGGTGCTAGGGCCCAGAGAGTAGAGTATCTCTTACTTCATGCATTCCATGCCAAAAAATATATTGTCCCCGACAAGACTTCATCTTATGTGAAGGAAAAAAAGATGGTAAAAAAGAGAACGAATCATAGTTCTGAGGAAAAAAATGTTGATGAATTTGATTTAGATGATGCAAATGTAGAAGCTCCCAATACTGAAAGTGGAAAAGGCAAAAAGGGATCCTCCTATTCAGGTGGGCTAGTCTTGGAGCCAAAGCGAGGTTTATATGATAAGTATGTATTGCTCCTGGACTTCAACAGTCTGTACCCTTCCATCATTCAGGAATATAATATTTGCTTCACCACTGTTGAAAGATCTCCAGATGGTGTTGTTCCTCTACTGCCATCTAGTAAAGTGACTGGAGTTCTTCCTGAGTCACCAGAGTTGCCCTCACGAATGATTGGTTCATGTCAGGCGACTTATGTCCATGTTTTACTAACTTGGTTGCTAAAAAATCTGGTTCAGAGAAGAAGAATGGTGAAGTCATGGATGAAGAATGCAACTGGTCTCAAGCTTCAGCAACTTGACATTCAGCAGCAGGCACTAAAGCTCACTGCCAACAGTATGTATGGATGTCTAGGGTTTTCTAATTCAAGGTTTTATGCAAAACCACTAGCAGAGCTTATTACTTCACAAGGAAGAGAAATACTGCAGAGCACTGTTGATCTTGTCAAGAATAATCTGAACCTGGAGGTAATTTATGGCGATACAGATTCAATAATGATTCATAGTGGACTGGATGATGTTGGCAAAGTGAAAGCAATTGCAGGAAAAGTTATACAAGAGTTTCCAGTCTGTTCCTTTATGTATCATGTACACAAATTTAATGTAACAAAGAAAAGGGGAAAAAAAGAAAAGAAATTTAACTCTATCCATGTTTTGATAATTTCCATTGAAAAAAGCTCGAAAATATGTAGCTTAAGACAACAGAAATTTTCCTTTGCAAATCTTTCCACTCGTTATACCAAGTCTCCATGTGAGTTATTCTTTCACGTTAACAAAAAGTACAAGTGCTTAGAAATCGATCTCGATGGTTTGTATAAGAGAATGTTGCTTCTCAAAAAAAAGAAATATGCTGCTGTAAAGTTGCAGTTTAAGGACGGAATGCCATATGAGGTTATTGAGCGTAAGGGTCTTGATATGGTTCGTCGTGACTGGAGCTTATTGTCAAAGGAATTAGGTGATTTCTGCTTGAATCAAATATTGTCTGGAGGGTCGTGCGAGGATGTCATTGAATCAATACATGACTCACTTATGAAGATACAAGAGGATATGAGAAAAGGGCAAGTTGCACTTGAGAAATATATCATCACGAAGACATTGACTAAGCCACCTGAAGCTTATCCTGATGCCAGAAACCAACCACATGTTCAAGTTTGTGGTAGTGGTTTGATATTTACTCCGAGATATGATGCTAGAACCATGGTTGGGTCTACTTCTGGTGGTTCTACAAGCATTGCTCAGCGGGCTAGACATCCTGATGAATTGAAAAAAGAGGATGGAAAATGGATGATTGACATCGAATACTACCTTTCACAGCAGATTCACCCTGTGGTTTCTCGTCTATGTGCCTCAATTCAGGGCACCAGCCCAGAACGCTTGGCTGACTGTCTGGGGCTTGATTCATCAAAGGTTTCCTCAGTTTCTAATATTGTATTTGCACTGACGTACTGTGCACTTAATTATGTCCAGTTCCAGATCAGATCAAGTGAAGTTTCCCGAAGCGATGTCTCCACTTCCCTCCTGTGTTCTGTAAATGATGAAGAAAGGTATCAGGGATGCATACCACTGACATTAACTTGCCCCAGCTGTTTTGGTACTTTTACTTGTCCTGCTATCTTTAGTTCTATATACAAATCTACAGATGGAAAGCAAGAAAAGCCAGTTGATGAACCTACAAGCAAATTTTGGAATAATTTGAATTGTCCAAAATGTCATGATGAAGCTAATGCGGGTAGAATGACTCCTGGAATGATTGCCAACCAGGTAAAAAGGCAAGCAGATAGGTTCATTTCAATGTATTATAATGGCTTAATGATGTGTGATGATGAAACCTGCAAATATTCCACACGTGCCGTCAATCTTCGAGTTATGGGCGACTCCGAGAAAGGAACCATCTGCCCAAACTATCCCCACTGCAATGGGCATCTAGTAAGGAAGGTATTACATCATCCAACTTTGAAGTACTTTAAGCCTACATATTTTGATCTCTCCTTAAGAGTTATGGTTCTAATCATGAATGTTCTTGTATATCAGTACACAGAAGCTGATTTGTACAAGCAGCTTTCGTATTTTAGTCACATTTTGGATACCGAACGATGTATGGAAAAGTTGGAGGTTCATGCAAGGGTAACATTAGAGAAAGAAATGGCGAAAATTCGGCCAATAGTCGAGTTAGCTGCATCGACAATTCAAAGCATTCGGGATCGCAGTGCATATGGTTGGATGCAGTTGCAAAGTTTTGTGGTAACATTTTGA | 5130 | 42.12 | MADEQPSAANRRRSRGSEAAARLTALERLKAIRSGGRRSEAGAFQVKLENPIYDTIPEDEYDALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGVCSSDESDGELDKPKKRKVEKKDAQPKKPSSSSLSAAAAMMGKQKLSSMFTSSIFRKTAKDDKAKGLASDSIVDDVIAEFAPDETDRERRRKGQIGAIPISRTVPPVPAVKSEGLTSQSLNLTGGSELIKDTENGNSGMTKVVTNSDLEPVRAGVEVQGNGETKEFDAKEDLNSQINLDPVGQSPNSSIKEDVTADSMPIMVETKAEPLVKKEPVSTLNAKISNERDPALSATAGWQAVRSEGSGSVNSAAEIAEEKSDFDIDADGSLPFYIVKAGDTFHSCCVVVKNMQRCIYAIPSAAFFHSDEMLELQKDAEQSQLSPADLRAKLQEVTAGLKNEMAKQLLDLNVSTFSMTPVKRKYAFERQDIPAGENYALKINYPFKYPPLPADLKGESFCALLGTHRSALELLLIKRKIKGPSWLSISKFSSCPASQRVSWCKFEVIVDSPKDVQTSTSSSKTLEIPPMIVTAIHIKTIINERQNANEIVSASVICCQRAKIDGPMLATEWKKPGMLRHFTIIRKLDGGIFPMGFAKESADRNLKAGSNVLICEGNERALLNRLMIELFKLDSDVLVGHNISGFDLDVLLHRAQGETKLPPSALTHPKEKGEEEYGYHDPLSRYKTLDPPSRRTHLPSNFQFCRVPSSMWSKIGRLKRSVMPKLGKGGSIFGSGASPGLMSCIAGRLLCDTYLSSRDLLKEISYSLTELAKTQLNKDRKEVTPHKIPKMYQASESLLNLIEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAKKYIVPDKTSSYVKEKKMVKKRTNHSSEEKNVDEFDLDDANVEAPNTESGKGKKGSSYSGGLVLEPKRGLYDKYVLLLDFNSLYPSIIQEYNICFTTVERSPDGVVPLLPSSKVTGVLPESPELPSRMIGSCQATYVHVLLTWLLKNLVQRRRMVKSWMKNATGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVKNNLNLEVIYGDTDSIMIHSGLDDVGKVKAIAGKVIQEFPVCSFMYHVHKFNVTKKRGKKEKKFNSIHVLIISIEKSSKICSLRQQKFSFANLSTRYTKSPCELFFHVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGMPYEVIERKGLDMVRRDWSLLSKELGDFCLNQILSGGSCEDVIESIHDSLMKIQEDMRKGQVALEKYIITKTLTKPPEAYPDARNQPHVQVCGSGLIFTPRYDARTMVGSTSGGSTSIAQRARHPDELKKEDGKWMIDIEYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKVSSVSNIVFALTYCALNYVQFQIRSSEVSRSDVSTSLLCSVNDEERYQGCIPLTLTCPSCFGTFTCPAIFSSIYKSTDGKQEKPVDEPTSKFWNNLNCPKCHDEANAGRMTPGMIANQVKRQADRFISMYYNGLMMCDDETCKYSTRAVNLRVMGDSEKGTICPNYPHCNGHLVRKVLHHPTLKYFKPTYFDLSLRVMVLIMNVLVYQYTEADLYKQLSYFSHILDTERCMEKLEVHARVTLEKEMAKIRPIVELAASTIQSIRDRSAYGWMQLQSFVVTF | 1709 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 7632866 | 7644989 | + | Lsi10G005330.1 | Lsi10g00533 | 672090 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi10g00533 | 1709 | MobiDBLite | consensus disorder prediction | 76 | 136 | - | - | |
Lsi10g00533 | 1709 | MobiDBLite | consensus disorder prediction | 907 | 947 | - | - | |
Lsi10g00533 | 1709 | Pfam | DNA polymerase alpha subunit p180 N terminal | 26 | 93 | IPR024647 | - | |
Lsi10g00533 | 1709 | Gene3D | - | 370 | 546 | - | - | |
Lsi10g00533 | 1709 | SUPERFAMILY | Ribonuclease H-like | 446 | 888 | IPR012337 | - | |
Lsi10g00533 | 1709 | PANTHER | DNA POLYMERASE ALPHA CATALYTIC SUBUNIT | 1215 | 1708 | - | - | |
Lsi10g00533 | 1709 | PANTHER | DNA POLYMERASE ALPHA CATALYTIC SUBUNIT | 733 | 1146 | - | - | |
Lsi10g00533 | 1709 | PANTHER | DNA POLYMERASE ALPHA CATALYTIC SUBUNIT | 13 | 687 | - | - | |
Lsi10g00533 | 1709 | Gene3D | - | 731 | 923 | IPR036397 | GO:0003676 | |
Lsi10g00533 | 1709 | Gene3D | - | 560 | 703 | IPR036397 | GO:0003676 | |
Lsi10g00533 | 1709 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Lsi10g00533 | 1709 | Pfam | DNA Polymerase alpha zinc finger | 1469 | 1705 | IPR015088 | GO:0003887|GO:0006260 | |
Lsi10g00533 | 1709 | MobiDBLite | consensus disorder prediction | 907 | 921 | - | - | |
Lsi10g00533 | 1709 | Gene3D | Helix hairpin bin | 1028 | 1077 | - | - | |
Lsi10g00533 | 1709 | Gene3D | Palm domain of DNA polymerase | 933 | 1160 | IPR023211 | - | |
Lsi10g00533 | 1709 | TIGRFAM | pol2: DNA polymerase (pol2) | 734 | 1146 | - | - | |
Lsi10g00533 | 1709 | Gene3D | Palm domain of DNA polymerase | 1199 | 1253 | IPR023211 | - | |
Lsi10g00533 | 1709 | PRINTS | DNA-directed DNA-polymerase family B signature | 1116 | 1124 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Lsi10g00533 | 1709 | PRINTS | DNA-directed DNA-polymerase family B signature | 964 | 977 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Lsi10g00533 | 1709 | PRINTS | DNA-directed DNA-polymerase family B signature | 1063 | 1075 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Lsi10g00533 | 1709 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Lsi10g00533 | 1709 | SUPERFAMILY | DNA/RNA polymerases | 891 | 1425 | IPR043502 | - | |
Lsi10g00533 | 1709 | MobiDBLite | consensus disorder prediction | 88 | 124 | - | - | |
Lsi10g00533 | 1709 | Gene3D | - | 387 | 513 | - | - | |
Lsi10g00533 | 1709 | CDD | DNA_polB_alpha_exo | 560 | 858 | - | - | |
Lsi10g00533 | 1709 | Gene3D | - | 1263 | 1435 | IPR042087 | - | |
Lsi10g00533 | 1709 | SMART | polmehr3 | 560 | 1130 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Lsi10g00533 | 1709 | Pfam | DNA polymerase family B, exonuclease domain | 375 | 687 | IPR006133 | - | |
Lsi10g00533 | 1709 | Pfam | DNA polymerase family B | 1215 | 1409 | IPR006134 | GO:0000166|GO:0003677 | |
Lsi10g00533 | 1709 | Pfam | DNA polymerase family B | 867 | 1145 | IPR006134 | GO:0000166|GO:0003677 | |
Lsi10g00533 | 1709 | CDD | POLBc_alpha | 940 | 1425 | IPR045846 | GO:0003887|GO:1902975 | |
Lsi10g00533 | 1709 | Gene3D | DNA Polymerase alpha, zinc finger | 1627 | 1694 | IPR038256 | - | |
Lsi10g00533 | 1709 | Gene3D | DNA Polymerase alpha, zinc finger | 1468 | 1622 | IPR038256 | - | |
Lsi10g00533 | 1709 | ProSitePatterns | DNA polymerase family B signature. | 1118 | 1126 | IPR017964 | GO:0000166|GO:0003676 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi10g00533 | Lsi-Chr10:7632866 | Lsi11g00572 | Lsi-Chr11:6055992 | 9.19E-25 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi10g00533 | K02320 | - | zju:107424534 | 1996.48 |