Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00540 ATGGTGATGGTTTCATCTATGTCATTTGAGTGGGCATCAAAGAAGGAGAAGCCAACGCCGCAGCCTCCCTTTCATCTTCTTTCTCTCTCTACTTCACGCGCTGAACCCGCCCTCGTTTTCGTTTTCCTCTTCACGCCAAACCGGCCAAGACCCACCTCCGAGCTCCACGCCGCTGTCGCTCACTTCGTTCTCCTTAACGCCGCCGTCGCCCTCAGCTTCGCGCCGATCGCTGCTGATCAGCGCGGCCGCTCGTGGTGCCCGCCGCCATTGGGTGTCGCCGAGTCGTCGGTCAGCGTTCAATTGGAATTTCTACTATACTGCTTTGATTTTATTATGTCCGGCGGATTGTCCCGTGAGATTAATCGAGATGCCATAAGGAATCAAGTAGATGGCATTGCTCCCAGCTCAGATGTTTTGGTGAAACTTGCGGATTCCCTAAGTTTGAGATCAAATCAGGAGATCTTAATTGAGGCTGTGGCGCTTGAAAAGTTGAAAGAGAGTGCAGAACAAGCTGAAAATACTGGAGAAGCCGAGGACATTGATCAAATGATCGCTCTTGTAACCCGTATGCATGAACGACTTATTGTGATAAAGCAGTCCCAAAGTTCTAGTCCTGTATCAATACCTGCTGATTTCTGCTGTCCTCTATCTCTCGAGCTAATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTATGAGAGAGGACTCAATGTTTGCCCGAAGACTAGACAGACATTGGTCCACACGAATCTTATACCTAATTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGACACAAACAATGTGAAATTGTCTGATCCGACAAAGTCGGTGAACTTAAACCAGCTTTCACCCCTTCTGGTTGGGAGCTTTGAGTCTGATACCCCTCGAGAACCCCGTTTTCCTCATTCCCCTGGCTACCAACCGATGTCTCCTCAGTCAACCAGGTCTGCAGGTTCAGGAAAGAACTTAAACTCACTTGGTGGAACCCATCGAGATGGAAGTTCTTCTTTGCTCTCCCACTCTCTCTCTGAGGATTCCTTGTCAAATGATGCTGGAGATGAACGAGGGATTGATGTTAGTAGATTATTGCTTTCAAGTTCAGAAGATCAAATGGCCAAATTGGAAGAAAATGGTTGCGATTCAGTTGCTAAACCATCTACGTCACCATCTGGAACCAATGTTCCAAATACCAGTGGTGAGGATGAACCGTCTCACAGTCATAACAGGACTTCCTCCACCTCTAGTGCAGTCTCAAATGCTAATCACTCTCGAGGAACTTCAGGGGAAGCCAATGAAGCTACACATTTGTCAACCAATTTGACAGGTTATGGCAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTGCTTCCTCGACTACCAACCACAGAGAACCAGAGCGAGAGCATCCACCTAGACTAGCTGACCCTAGGTCTCGAGGTAATACGATGTGGCTCCGGCCATCAGAGAGGTTTGCCTCTAGGATAATTACATCATCTGCTAATGAGACAAGGCCGGATCTTTCTGCTATTGAAGCACAAGTTCAGAAGGTGGTAGAGGAATTAAAGAGCAGTTCACTGGACACTTTAAGAAGTGCCACAGCTGAATTGCGGCTGCTGGCTAAACATAATATGGATAACCGGATAGTGATTGCTCAATGTGGGGCCATTGAATATTTGGTTGATTTGCTCCTCTCTGCAGACTCGAAGATCCAGGAGAATGCTGTGACAGCACTTCTAAACTTATCCATTAATGATAATAACAAAAGTGCCATTGCTCAGGCTAATGCCATTGAACCTTTGATTCATGTTCTTAAAACTGGGAGCCCAGAAGCAAAGGAGAACTCAGCAGCAACTCTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGATCTGGAGCAATAGGACCTCTGGTTGAATTATTGGGCAATGGAACTCCAAGGGGAAAGAAGGATGCAGCTACAGCTCTGTTTAATTTGTCAATATTTCATGAGAACAAAGCTAGAATTGTACAAGCTGGAGCTGTGAGGCATCTTGTGGAGTTGATGGACCCAGCAGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTTGCTACTATTCCCGAGGGTAGGTCTGCAATTGGCCAGGAAGGTGGAATTCCGGTTCTGGTTGAGGTCGTCGAGTTGGGTTCTGCGAGAGGAAAGGAAAATGCGGCAGCAGCATTGTTGCAGCTTTGCACAACAAGCAATAGGCATTGCAGTATGGTGCTCCAAGAAGGAGCCGTGCCACCATTAGTGGCATTGTCTCAATCTGGCACCGCTAGAGCCAAAGAAAAGAAATTTTTACCAAAACTAACCATACGGCTAATCACAGGCCCAAGCACTTCTAAGCCATTTCAGAAGCCAGAGACATGGCAATTCAGGAAGAGGATTGCTTCGCATATGAAACTTGGGGAATGTAAGCAGAGTAATCTCTGCAAAGCGCACGAGCAGTTACATTCGGAGGCTTCGTCGTTTCTTCTCTTTAGTCTTCAATGGAAAGACTTGGAGTCGCACTTCGATTTCACTCTAGAGATGATTCAGACTCAGTACGAGGAACTTGAGGGACGGGAGAAGGCGATTGCGTTGAAGGAAGAGCGATTGGATGATGTGAAGAAATCTATTGATGAATGCTCGAAAGAGCTTGAGTTGAAGAAGAATGAACTGAGCGAGTTGAATCGTTTGATTGTGAAATATGACGGTGCGGTTAAACTGAAGGAGGCGGAATTGGATTTAGCCCAAGAGAGGCTAGGAGTTTTGTCGAAGGATATTAAATTGAAAGAAGACGAGGTTAATAAAGCATGCATGAGATTTTTGGAACTTGAGAAGGAGTTTGAGGAGAAGGAGAAGGTTTTTGATATGGTTCGAAAGAGGATTGATGATTGTGAGCATGTGATGGAATTAAAAGAACAAAAATTAAATAGCATAATGCTGTTAATTGAAGAGCGATCATTGGAATGTGAGTCCAAGGGGAAGAGTGTTGCGTCGATAAGAGCTTTGATTCAAGAACATGGAGAAGAGCTTGCAATCAAGGAGAAGCAGTATGATGCAATTCAGATGGCAATTAAAGAGAGCAATGGAGAACTCAAACTGAAAGAAAAGGAGCTCGAGACAATTCAAAATATGATTGCCACTAGGTGGAAAGAGAAAAGATTAGACAAGATAGAAAAGACTATAAAAGTGCGGACTGAAGAGCTTGATCTTAAAGAGAAGGAGTTTGGTGTAATGCAGAGCAAGTTGAAGGCTCTTTCTGAAGACTTGTTATCAAAGGAATCAGAATTAGAATCCATCAAAACTTGTATAAAGGAACATAGCAAAGAACTTGATGTGCAGGAAAAGCAACTTGACAGCACCCAACAATCTGTTCGAGATTGCCAAAATGCTGTTATACTGCTTACAAATTATGTTAGTACGATAGAAAAGGCTATCATCGAATGCTCAAAGGAATGGGACTTGAAGGAGAACCACCTTGATTCACTGCAAGAATCAGTGGATGACTACTTTAACGAGTTGCCATCAGTGGTGAAACAACACGATTCCATTTCTTTGACAGTCGGTAAATGCCTTGAAGGCTTAAAAGCTCAAAAAGAGCATTTCAATGTGTTGAGGAAATCAATAGAAGAGCGCTCAAAGAATCTCAAGAACGAAGAAAACAATTTTGAAAGACGGGTAGAAGAGCTCAACAAGAAAGATGAGAAAGTGAGCATGTATCTAAAAGAGATTGAATCTCTGAAAGCAGACATGGCTTCACAGATAATATTGCTGGAAAAAGGCCGTGAAGAACTAAGATTAAAAGAAATACAACATAAGGTGCTGGCTGAGCAACTTGAATCAAAAGAAAAAGATATGAGTCTAGTCAGAGTTTTGATGGAAAAATGTAATGACAAGGTAAAATTGATAGATGATCCAAACAATTTTCATATGAAAGTAAAAACTGAGGATTCTGGCTGCACGGACAGTTCTAATACTTTGAATTTTCATACTGGATCAGCCTTAGATGGAAAGCTTTTGTTAGCTCTCTTATGTGAGCATCTAAAACTGCATGATTTGGTACGCACGGAACTGATTATTACCCTTCAAGCATCTCCTGATCCTGCTAAGTTGGTTCTAGATGCTTTGAGATGGTTCTACCCTCCACATACAGTGTCTGAAGATGCAAAAGTCGATTTGCATAATGTCAAGAGGGGATGCATTTTGCTGTCTGAACTATTATTGAACATCTCACCAAAAATCTCGCCTCCACTGAAAGAAGAAGCTCTAAAGCTGGCAGGCCAGTGGAAGGCTAAGATATTGATGCCAGTTGAGAATCATGTGGAGGTGGTGGCATTCTTGCTACTTGTTGCTAATTTTCGGTTGGCCTCAGATTTTAATGCAGAAGAACTACAGATTCTTCTGAATTCTATTTCACAATATAAACAAGCATTTGAGCTATCCCGAGCACTTGGTATTGGAGATAAATCTTCTGAGGGCAGTGCAACTCCTAGTTTTGTTAAACTGGAGCAACATGAATCTTTGCCAGCCAACCAAGTGCTGGACTCTTCCTTAAAAAATGAGCAGCTTAGCATGGATCCAAAAGAGAAGAGATTATTTCTACTTCTGAACAAGAAGTTGACTGGACCGAAATTGATACCAAGTGTAATCTTATCGATTCTTAAAGGGTCATCAGACCCTGCAAAACTTGTCTTGGATCTTATTCAAGGTTCTTTTCACCAACAATTGAAGAAAGAACAGTTAGGCTTTGAAGAAAGTTTCTTGAGGTGGTCCACACTTCTTTTAAAACAGTTAAAGCAAATCTCACCAATTATTGGTCCAAAGGAAAGAGAAGATGCAATGAAGCTTGCAGTTGACTGGAAATTGAACATGAGAAGTGATACAAATGGGTCTATGGATGCTGTTGGCTTCTTGCAACTTCTAGGGTCATATGGATTGACAACTTCATTCAGCGGGGATGAGATTTTGAAGCTCTTTGAGAACATAGTGCTTCATGATCAGGCATCGGAATTGTGCCTGATGTTCGGGAACAAGTACCAAAAGCTTTTGTTTAGAAAAGAAGATAACAAGAAACTCAAACATTACCAAATTGTACAAAATCTTATTGGAACAAAGCAATTTGTCAAGGCTGTCAGGTTTATATGTGGATACAAGTTGGAATGCTTTCGACCTGTACAGATCTTGAACGAATATTTGCGAGATGCAAGGAATGCCACTGTAAAAGCCAGCAAGAAGAAGAATACAGGTCAGGAAGATGTACGTGCTGCCATGGATGAAGCCATAGATAAAGAGATAGAGGCTGTGAAGTTGGTAATTACATGCGTCACAGATTGTAACCTTTGTTCTGAAATCTCAACTCAAGGCCTTGAAAACCGTGTTCTTTCGCTCGCAGAGATGAGAAGGTTGAAATGCAACAGCCGTGGTCAACCAACAAGTTTAACCACTCAACAGCCACATACCACCATTGTTCAACCACAACCACCTAAGGCTAATTTCAAAGCACAACGTAATCCGACTAAGGGTGAAGTGAAACCACCGCAATCGGAGAAGTCCGACATGCAACAACTGCACCCAAACCACAATCAACCACGACAGCAACATCCTCCTCCTACCCATCAACCCCATCACCAACAGGCGCGGAAGAAACGCAAGTTCCAAAATGGTTCAATGAAATACCCTCGAAAGCCTCCTCCATCCACTAGACCTATGTTCTCAAGTTCATCTCCAAGACTACACGATGAAACGTCAACGTTTCAGCAGTACAATTCAGGATTTACTGGAATGCATAGGCTATTTGGTCTCGATGAGGGTGGTCATGAATATACTGAACATGAAAATCATTATACACGCCCGACCAGGCCTAGACCATAA 5916 43.14 MVMVSSMSFEWASKKEKPTPQPPFHLLSLSTSRAEPALVFVFLFTPNRPRPTSELHAAVAHFVLLNAAVALSFAPIAADQRGRSWCPPPLGVAESSVSVQLEFLLYCFDFIMSGGLSREINRDAIRNQVDGIAPSSDVLVKLADSLSLRSNQEILIEAVALEKLKESAEQAENTGEAEDIDQMIALVTRMHERLIVIKQSQSSSPVSIPADFCCPLSLELMTDPVIVASGQTYERGLNVCPKTRQTLVHTNLIPNYTVKALIANWCDTNNVKLSDPTKSVNLNQLSPLLVGSFESDTPREPRFPHSPGYQPMSPQSTRSAGSGKNLNSLGGTHRDGSSSLLSHSLSEDSLSNDAGDERGIDVSRLLLSSSEDQMAKLEENGCDSVAKPSTSPSGTNVPNTSGEDEPSHSHNRTSSTSSAVSNANHSRGTSGEANEATHLSTNLTGYGSDAAGESKSEPLAAASSTTNHREPEREHPPRLADPRSRGNTMWLRPSERFASRIITSSANETRPDLSAIEAQVQKVVEELKSSSLDTLRSATAELRLLAKHNMDNRIVIAQCGAIEYLVDLLLSADSKIQENAVTALLNLSINDNNKSAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSNRHCSMVLQEGAVPPLVALSQSGTARAKEKKFLPKLTIRLITGPSTSKPFQKPETWQFRKRIASHMKLGECKQSNLCKAHEQLHSEASSFLLFSLQWKDLESHFDFTLEMIQTQYEELEGREKAIALKEERLDDVKKSIDECSKELELKKNELSELNRLIVKYDGAVKLKEAELDLAQERLGVLSKDIKLKEDEVNKACMRFLELEKEFEEKEKVFDMVRKRIDDCEHVMELKEQKLNSIMLLIEERSLECESKGKSVASIRALIQEHGEELAIKEKQYDAIQMAIKESNGELKLKEKELETIQNMIATRWKEKRLDKIEKTIKVRTEELDLKEKEFGVMQSKLKALSEDLLSKESELESIKTCIKEHSKELDVQEKQLDSTQQSVRDCQNAVILLTNYVSTIEKAIIECSKEWDLKENHLDSLQESVDDYFNELPSVVKQHDSISLTVGKCLEGLKAQKEHFNVLRKSIEERSKNLKNEENNFERRVEELNKKDEKVSMYLKEIESLKADMASQIILLEKGREELRLKEIQHKVLAEQLESKEKDMSLVRVLMEKCNDKVKLIDDPNNFHMKVKTEDSGCTDSSNTLNFHTGSALDGKLLLALLCEHLKLHDLVRTELIITLQASPDPAKLVLDALRWFYPPHTVSEDAKVDLHNVKRGCILLSELLLNISPKISPPLKEEALKLAGQWKAKILMPVENHVEVVAFLLLVANFRLASDFNAEELQILLNSISQYKQAFELSRALGIGDKSSEGSATPSFVKLEQHESLPANQVLDSSLKNEQLSMDPKEKRLFLLLNKKLTGPKLIPSVILSILKGSSDPAKLVLDLIQGSFHQQLKKEQLGFEESFLRWSTLLLKQLKQISPIIGPKEREDAMKLAVDWKLNMRSDTNGSMDAVGFLQLLGSYGLTTSFSGDEILKLFENIVLHDQASELCLMFGNKYQKLLFRKEDNKKLKHYQIVQNLIGTKQFVKAVRFICGYKLECFRPVQILNEYLRDARNATVKASKKKNTGQEDVRAAMDEAIDKEIEAVKLVITCVTDCNLCSEISTQGLENRVLSLAEMRRLKCNSRGQPTSLTTQQPHTTIVQPQPPKANFKAQRNPTKGEVKPPQSEKSDMQQLHPNHNQPRQQHPPPTHQPHHQQARKKRKFQNGSMKYPRKPPPSTRPMFSSSSPRLHDETSTFQQYNSGFTGMHRLFGLDEGGHEYTEHENHYTRPTRPRP 1971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7732852 7767988 - Lsi10G005400.1 Lsi10g00540 672097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00540 1971 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 280 IPR013083 -
Lsi10g00540 1971 SMART arm_5 672 711 IPR000225 GO:0005515
Lsi10g00540 1971 SMART arm_5 590 630 IPR000225 GO:0005515
Lsi10g00540 1971 SMART arm_5 631 671 IPR000225 GO:0005515
Lsi10g00540 1971 SMART arm_5 549 589 IPR000225 GO:0005515
Lsi10g00540 1971 SMART arm_5 712 752 IPR000225 GO:0005515
Lsi10g00540 1971 CDD RING-Ubox_PUB 212 245 IPR045210 -
Lsi10g00540 1971 Pfam U-box domain 208 269 IPR003613 GO:0004842|GO:0016567
Lsi10g00540 1971 ProSiteProfiles U-box domain profile. 207 272 IPR003613 GO:0004842|GO:0016567
Lsi10g00540 1971 Coils Coil 1070 1090 - -
Lsi10g00540 1971 Coils Coil 151 181 - -
Lsi10g00540 1971 MobiDBLite consensus disorder prediction 1822 1848 - -
Lsi10g00540 1971 SUPERFAMILY RING/U-box 197 275 - -
Lsi10g00540 1971 Coils Coil 928 948 - -
Lsi10g00540 1971 MobiDBLite consensus disorder prediction 1951 1971 - -
Lsi10g00540 1971 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 560 602 IPR000225 GO:0005515
Lsi10g00540 1971 MobiDBLite consensus disorder prediction 379 491 - -
Lsi10g00540 1971 SUPERFAMILY Tropomyosin 867 1085 - -
Lsi10g00540 1971 PANTHER U BOX DOMAIN-CONTAINING 124 784 - -
Lsi10g00540 1971 Coils Coil 1040 1060 - -
Lsi10g00540 1971 Coils Coil 1119 1146 - -
Lsi10g00540 1971 MobiDBLite consensus disorder prediction 411 449 - -
Lsi10g00540 1971 MobiDBLite consensus disorder prediction 467 481 - -
Lsi10g00540 1971 Coils Coil 1214 1265 - -
Lsi10g00540 1971 Gene3D - 498 835 IPR011989 -
Lsi10g00540 1971 SMART Ubox_2 211 265 IPR003613 GO:0004842|GO:0016567
Lsi10g00540 1971 SUPERFAMILY ARM repeat 519 781 IPR016024 -
Lsi10g00540 1971 Pfam Armadillo/beta-catenin-like repeat 551 588 IPR000225 GO:0005515
Lsi10g00540 1971 Pfam Armadillo/beta-catenin-like repeat 590 629 IPR000225 GO:0005515
Lsi10g00540 1971 Pfam Armadillo/beta-catenin-like repeat 633 670 IPR000225 GO:0005515
Lsi10g00540 1971 MobiDBLite consensus disorder prediction 1822 1929 - -
Lsi10g00540 1971 Pfam Frigida-like protein 1350 1504 IPR012474 -
Lsi10g00540 1971 Pfam Frigida-like protein 1528 1813 IPR012474 -
Lsi10g00540 1971 MobiDBLite consensus disorder prediction 309 349 - -
Lsi10g00540 1971 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 642 684 IPR000225 GO:0005515
Lsi10g00540 1971 MobiDBLite consensus disorder prediction 384 404 - -
Lsi10g00540 1971 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 683 724 IPR000225 GO:0005515
Lsi10g00540 1971 MobiDBLite consensus disorder prediction 291 356 - -
Lsi10g00540 1971 MobiDBLite consensus disorder prediction 1856 1877 - -
Lsi10g00540 1971 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 124 784 - -
Lsi10g00540 1971 Coils Coil 879 913 - -
Lsi10g00540 1971 MobiDBLite consensus disorder prediction 1889 1904 - -
Lsi10g00540 1971 Coils Coil 360 380 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01139 Lsi-Chr5:19146629 Lsi10g00540 Lsi-Chr10:7732852 3.13E-08 dispersed
Lsi10g00540 Lsi-Chr10:7732852 Lsi10g01368 Lsi-Chr10:17834008 1.38E-09 dispersed
Lsi11g01674 Lsi-Chr11:24981859 Lsi10g00540 Lsi-Chr10:7732852 9.58E-09 dispersed
Lsi01g00483 Lsi-Chr1:4011190 Lsi10g00540 Lsi-Chr10:7732852 2.72E-76 transposed
Lsi02g01849 Lsi-Chr2:24242705 Lsi10g00540 Lsi-Chr10:7732852 1.23E-22 transposed
Lsi02g02153 Lsi-Chr2:27883391 Lsi10g00540 Lsi-Chr10:7732852 4.33E-17 transposed
Lsi02g02201 Lsi-Chr2:28460002 Lsi10g00540 Lsi-Chr10:7732852 1.65E-10 transposed
Lsi04g02146 Lsi-Chr4:28574194 Lsi10g00540 Lsi-Chr10:7732852 2.73E-15 transposed
Lsi08g01525 Lsi-Chr8:23309098 Lsi10g00540 Lsi-Chr10:7732852 1.42E-78 transposed
Lsi09g00934 Lsi-Chr9:11695617 Lsi10g00540 Lsi-Chr10:7732852 2.87E-32 transposed
Lsi09g01317 Lsi-Chr9:21027061 Lsi10g00540 Lsi-Chr10:7732852 3.86E-09 transposed
Lsi01g00933 Lsi-Chr1:7536321 Lsi10g00540 Lsi-Chr10:7732852 4.73E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00540 - - csv:101218416 1559.66