Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00540 ATGGTGATGGTTTCATCTATGTCATTTGAGTGGGCATCAAAGAAGGAGAAGCCAACGCCGCAGCCTCCCTTTCATCTTCTTTCTCTCTCTACTTCACGCGCTGAACCCGCCCTCGTTTTCGTTTTCCTCTTCACGCCAAACCGGCCAAGACCCACCTCCGAGCTCCACGCCGCTGTCGCTCACTTCGTTCTCCTTAACGCCGCCGTCGCCCTCAGCTTCGCGCCGATCGCTGCTGATCAGCGCGGCCGCTCGTGGTGCCCGCCGCCATTGGGTGTCGCCGAGTCGTCGGTCAGCGTTCAATTGGAATTTCTACTATACTGCTTTGATTTTATTATGTCCGGCGGATTGTCCCGTGAGATTAATCGAGATGCCATAAGGAATCAAGTAGATGGCATTGCTCCCAGCTCAGATGTTTTGGTGAAACTTGCGGATTCCCTAAGTTTGAGATCAAATCAGGAGATCTTAATTGAGGCTGTGGCGCTTGAAAAGTTGAAAGAGAGTGCAGAACAAGCTGAAAATACTGGAGAAGCCGAGGACATTGATCAAATGATCGCTCTTGTAACCCGTATGCATGAACGACTTATTGTGATAAAGCAGTCCCAAAGTTCTAGTCCTGTATCAATACCTGCTGATTTCTGCTGTCCTCTATCTCTCGAGCTAATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTATGAGAGAGGACTCAATGTTTGCCCGAAGACTAGACAGACATTGGTCCACACGAATCTTATACCTAATTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGACACAAACAATGTGAAATTGTCTGATCCGACAAAGTCGGTGAACTTAAACCAGCTTTCACCCCTTCTGGTTGGGAGCTTTGAGTCTGATACCCCTCGAGAACCCCGTTTTCCTCATTCCCCTGGCTACCAACCGATGTCTCCTCAGTCAACCAGGTCTGCAGGTTCAGGAAAGAACTTAAACTCACTTGGTGGAACCCATCGAGATGGAAGTTCTTCTTTGCTCTCCCACTCTCTCTCTGAGGATTCCTTGTCAAATGATGCTGGAGATGAACGAGGGATTGATGTTAGTAGATTATTGCTTTCAAGTTCAGAAGATCAAATGGCCAAATTGGAAGAAAATGGTTGCGATTCAGTTGCTAAACCATCTACGTCACCATCTGGAACCAATGTTCCAAATACCAGTGGTGAGGATGAACCGTCTCACAGTCATAACAGGACTTCCTCCACCTCTAGTGCAGTCTCAAATGCTAATCACTCTCGAGGAACTTCAGGGGAAGCCAATGAAGCTACACATTTGTCAACCAATTTGACAGGTTATGGCAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTGCTTCCTCGACTACCAACCACAGAGAACCAGAGCGAGAGCATCCACCTAGACTAGCTGACCCTAGGTCTCGAGGTAATACGATGTGGCTCCGGCCATCAGAGAGGTTTGCCTCTAGGATAATTACATCATCTGCTAATGAGACAAGGCCGGATCTTTCTGCTATTGAAGCACAAGTTCAGAAGGTGGTAGAGGAATTAAAGAGCAGTTCACTGGACACTTTAAGAAGTGCCACAGCTGAATTGCGGCTGCTGGCTAAACATAATATGGATAACCGGATAGTGATTGCTCAATGTGGGGCCATTGAATATTTGGTTGATTTGCTCCTCTCTGCAGACTCGAAGATCCAGGAGAATGCTGTGACAGCACTTCTAAACTTATCCATTAATGATAATAACAAAAGTGCCATTGCTCAGGCTAATGCCATTGAACCTTTGATTCATGTTCTTAAAACTGGGAGCCCAGAAGCAAAGGAGAACTCAGCAGCAACTCTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGATCTGGAGCAATAGGACCTCTGGTTGAATTATTGGGCAATGGAACTCCAAGGGGAAAGAAGGATGCAGCTACAGCTCTGTTTAATTTGTCAATATTTCATGAGAACAAAGCTAGAATTGTACAAGCTGGAGCTGTGAGGCATCTTGTGGAGTTGATGGACCCAGCAGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTTGCTACTATTCCCGAGGGTAGGTCTGCAATTGGCCAGGAAGGTGGAATTCCGGTTCTGGTTGAGGTCGTCGAGTTGGGTTCTGCGAGAGGAAAGGAAAATGCGGCAGCAGCATTGTTGCAGCTTTGCACAACAAGCAATAGGCATTGCAGTATGGTGCTCCAAGAAGGAGCCGTGCCACCATTAGTGGCATTGTCTCAATCTGGCACCGCTAGAGCCAAAGAAAAGAAATTTTTACCAAAACTAACCATACGGCTAATCACAGGCCCAAGCACTTCTAAGCCATTTCAGAAGCCAGAGACATGGCAATTCAGGAAGAGGATTGCTTCGCATATGAAACTTGGGGAATGTAAGCAGAGTAATCTCTGCAAAGCGCACGAGCAGTTACATTCGGAGGCTTCGTCGTTTCTTCTCTTTAGTCTTCAATGGAAAGACTTGGAGTCGCACTTCGATTTCACTCTAGAGATGATTCAGACTCAGTACGAGGAACTTGAGGGACGGGAGAAGGCGATTGCGTTGAAGGAAGAGCGATTGGATGATGTGAAGAAATCTATTGATGAATGCTCGAAAGAGCTTGAGTTGAAGAAGAATGAACTGAGCGAGTTGAATCGTTTGATTGTGAAATATGACGGTGCGGTTAAACTGAAGGAGGCGGAATTGGATTTAGCCCAAGAGAGGCTAGGAGTTTTGTCGAAGGATATTAAATTGAAAGAAGACGAGGTTAATAAAGCATGCATGAGATTTTTGGAACTTGAGAAGGAGTTTGAGGAGAAGGAGAAGGTTTTTGATATGGTTCGAAAGAGGATTGATGATTGTGAGCATGTGATGGAATTAAAAGAACAAAAATTAAATAGCATAATGCTGTTAATTGAAGAGCGATCATTGGAATGTGAGTCCAAGGGGAAGAGTGTTGCGTCGATAAGAGCTTTGATTCAAGAACATGGAGAAGAGCTTGCAATCAAGGAGAAGCAGTATGATGCAATTCAGATGGCAATTAAAGAGAGCAATGGAGAACTCAAACTGAAAGAAAAGGAGCTCGAGACAATTCAAAATATGATTGCCACTAGGTGGAAAGAGAAAAGATTAGACAAGATAGAAAAGACTATAAAAGTGCGGACTGAAGAGCTTGATCTTAAAGAGAAGGAGTTTGGTGTAATGCAGAGCAAGTTGAAGGCTCTTTCTGAAGACTTGTTATCAAAGGAATCAGAATTAGAATCCATCAAAACTTGTATAAAGGAACATAGCAAAGAACTTGATGTGCAGGAAAAGCAACTTGACAGCACCCAACAATCTGTTCGAGATTGCCAAAATGCTGTTATACTGCTTACAAATTATGTTAGTACGATAGAAAAGGCTATCATCGAATGCTCAAAGGAATGGGACTTGAAGGAGAACCACCTTGATTCACTGCAAGAATCAGTGGATGACTACTTTAACGAGTTGCCATCAGTGGTGAAACAACACGATTCCATTTCTTTGACAGTCGGTAAATGCCTTGAAGGCTTAAAAGCTCAAAAAGAGCATTTCAATGTGTTGAGGAAATCAATAGAAGAGCGCTCAAAGAATCTCAAGAACGAAGAAAACAATTTTGAAAGACGGGTAGAAGAGCTCAACAAGAAAGATGAGAAAGTGAGCATGTATCTAAAAGAGATTGAATCTCTGAAAGCAGACATGGCTTCACAGATAATATTGCTGGAAAAAGGCCGTGAAGAACTAAGATTAAAAGAAATACAACATAAGGTGCTGGCTGAGCAACTTGAATCAAAAGAAAAAGATATGAGTCTAGTCAGAGTTTTGATGGAAAAATGTAATGACAAGGTAAAATTGATAGATGATCCAAACAATTTTCATATGAAAGTAAAAACTGAGGATTCTGGCTGCACGGACAGTTCTAATACTTTGAATTTTCATACTGGATCAGCCTTAGATGGAAAGCTTTTGTTAGCTCTCTTATGTGAGCATCTAAAACTGCATGATTTGGTACGCACGGAACTGATTATTACCCTTCAAGCATCTCCTGATCCTGCTAAGTTGGTTCTAGATGCTTTGAGATGGTTCTACCCTCCACATACAGTGTCTGAAGATGCAAAAGTCGATTTGCATAATGTCAAGAGGGGATGCATTTTGCTGTCTGAACTATTATTGAACATCTCACCAAAAATCTCGCCTCCACTGAAAGAAGAAGCTCTAAAGCTGGCAGGCCAGTGGAAGGCTAAGATATTGATGCCAGTTGAGAATCATGTGGAGGTGGTGGCATTCTTGCTACTTGTTGCTAATTTTCGGTTGGCCTCAGATTTTAATGCAGAAGAACTACAGATTCTTCTGAATTCTATTTCACAATATAAACAAGCATTTGAGCTATCCCGAGCACTTGGTATTGGAGATAAATCTTCTGAGGGCAGTGCAACTCCTAGTTTTGTTAAACTGGAGCAACATGAATCTTTGCCAGCCAACCAAGTGCTGGACTCTTCCTTAAAAAATGAGCAGCTTAGCATGGATCCAAAAGAGAAGAGATTATTTCTACTTCTGAACAAGAAGTTGACTGGACCGAAATTGATACCAAGTGTAATCTTATCGATTCTTAAAGGGTCATCAGACCCTGCAAAACTTGTCTTGGATCTTATTCAAGGTTCTTTTCACCAACAATTGAAGAAAGAACAGTTAGGCTTTGAAGAAAGTTTCTTGAGGTGGTCCACACTTCTTTTAAAACAGTTAAAGCAAATCTCACCAATTATTGGTCCAAAGGAAAGAGAAGATGCAATGAAGCTTGCAGTTGACTGGAAATTGAACATGAGAAGTGATACAAATGGGTCTATGGATGCTGTTGGCTTCTTGCAACTTCTAGGGTCATATGGATTGACAACTTCATTCAGCGGGGATGAGATTTTGAAGCTCTTTGAGAACATAGTGCTTCATGATCAGGCATCGGAATTGTGCCTGATGTTCGGGAACAAGTACCAAAAGCTTTTGTTTAGAAAAGAAGATAACAAGAAACTCAAACATTACCAAATTGTACAAAATCTTATTGGAACAAAGCAATTTGTCAAGGCTGTCAGGTTTATATGTGGATACAAGTTGGAATGCTTTCGACCTGTACAGATCTTGAACGAATATTTGCGAGATGCAAGGAATGCCACTGTAAAAGCCAGCAAGAAGAAGAATACAGGTCAGGAAGATGTACGTGCTGCCATGGATGAAGCCATAGATAAAGAGATAGAGGCTGTGAAGTTGGTAATTACATGCGTCACAGATTGTAACCTTTGTTCTGAAATCTCAACTCAAGGCCTTGAAAACCGTGTTCTTTCGCTCGCAGAGATGAGAAGGTTGAAATGCAACAGCCGTGGTCAACCAACAAGTTTAACCACTCAACAGCCACATACCACCATTGTTCAACCACAACCACCTAAGGCTAATTTCAAAGCACAACGTAATCCGACTAAGGGTGAAGTGAAACCACCGCAATCGGAGAAGTCCGACATGCAACAACTGCACCCAAACCACAATCAACCACGACAGCAACATCCTCCTCCTACCCATCAACCCCATCACCAACAGGCGCGGAAGAAACGCAAGTTCCAAAATGGTTCAATGAAATACCCTCGAAAGCCTCCTCCATCCACTAGACCTATGTTCTCAAGTTCATCTCCAAGACTACACGATGAAACGTCAACGTTTCAGCAGTACAATTCAGGATTTACTGGAATGCATAGGCTATTTGGTCTCGATGAGGGTGGTCATGAATATACTGAACATGAAAATCATTATACACGCCCGACCAGGCCTAGACCATAA 5916 43.14 MVMVSSMSFEWASKKEKPTPQPPFHLLSLSTSRAEPALVFVFLFTPNRPRPTSELHAAVAHFVLLNAAVALSFAPIAADQRGRSWCPPPLGVAESSVSVQLEFLLYCFDFIMSGGLSREINRDAIRNQVDGIAPSSDVLVKLADSLSLRSNQEILIEAVALEKLKESAEQAENTGEAEDIDQMIALVTRMHERLIVIKQSQSSSPVSIPADFCCPLSLELMTDPVIVASGQTYERGLNVCPKTRQTLVHTNLIPNYTVKALIANWCDTNNVKLSDPTKSVNLNQLSPLLVGSFESDTPREPRFPHSPGYQPMSPQSTRSAGSGKNLNSLGGTHRDGSSSLLSHSLSEDSLSNDAGDERGIDVSRLLLSSSEDQMAKLEENGCDSVAKPSTSPSGTNVPNTSGEDEPSHSHNRTSSTSSAVSNANHSRGTSGEANEATHLSTNLTGYGSDAAGESKSEPLAAASSTTNHREPEREHPPRLADPRSRGNTMWLRPSERFASRIITSSANETRPDLSAIEAQVQKVVEELKSSSLDTLRSATAELRLLAKHNMDNRIVIAQCGAIEYLVDLLLSADSKIQENAVTALLNLSINDNNKSAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSNRHCSMVLQEGAVPPLVALSQSGTARAKEKKFLPKLTIRLITGPSTSKPFQKPETWQFRKRIASHMKLGECKQSNLCKAHEQLHSEASSFLLFSLQWKDLESHFDFTLEMIQTQYEELEGREKAIALKEERLDDVKKSIDECSKELELKKNELSELNRLIVKYDGAVKLKEAELDLAQERLGVLSKDIKLKEDEVNKACMRFLELEKEFEEKEKVFDMVRKRIDDCEHVMELKEQKLNSIMLLIEERSLECESKGKSVASIRALIQEHGEELAIKEKQYDAIQMAIKESNGELKLKEKELETIQNMIATRWKEKRLDKIEKTIKVRTEELDLKEKEFGVMQSKLKALSEDLLSKESELESIKTCIKEHSKELDVQEKQLDSTQQSVRDCQNAVILLTNYVSTIEKAIIECSKEWDLKENHLDSLQESVDDYFNELPSVVKQHDSISLTVGKCLEGLKAQKEHFNVLRKSIEERSKNLKNEENNFERRVEELNKKDEKVSMYLKEIESLKADMASQIILLEKGREELRLKEIQHKVLAEQLESKEKDMSLVRVLMEKCNDKVKLIDDPNNFHMKVKTEDSGCTDSSNTLNFHTGSALDGKLLLALLCEHLKLHDLVRTELIITLQASPDPAKLVLDALRWFYPPHTVSEDAKVDLHNVKRGCILLSELLLNISPKISPPLKEEALKLAGQWKAKILMPVENHVEVVAFLLLVANFRLASDFNAEELQILLNSISQYKQAFELSRALGIGDKSSEGSATPSFVKLEQHESLPANQVLDSSLKNEQLSMDPKEKRLFLLLNKKLTGPKLIPSVILSILKGSSDPAKLVLDLIQGSFHQQLKKEQLGFEESFLRWSTLLLKQLKQISPIIGPKEREDAMKLAVDWKLNMRSDTNGSMDAVGFLQLLGSYGLTTSFSGDEILKLFENIVLHDQASELCLMFGNKYQKLLFRKEDNKKLKHYQIVQNLIGTKQFVKAVRFICGYKLECFRPVQILNEYLRDARNATVKASKKKNTGQEDVRAAMDEAIDKEIEAVKLVITCVTDCNLCSEISTQGLENRVLSLAEMRRLKCNSRGQPTSLTTQQPHTTIVQPQPPKANFKAQRNPTKGEVKPPQSEKSDMQQLHPNHNQPRQQHPPPTHQPHHQQARKKRKFQNGSMKYPRKPPPSTRPMFSSSSPRLHDETSTFQQYNSGFTGMHRLFGLDEGGHEYTEHENHYTRPTRPRP 1971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7732852 7767988 - Lsi10G005400.1 Lsi10g00540 672097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00540 1971 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 280 IPR013083 -
Lsi10g00540 1971 SMART arm_5 672 711 IPR000225 GO:0005515
Lsi10g00540 1971 SMART arm_5 590 630 IPR000225 GO:0005515
Lsi10g00540 1971 SMART arm_5 631 671 IPR000225 GO:0005515
Lsi10g00540 1971 SMART arm_5 549 589 IPR000225 GO:0005515
Lsi10g00540 1971 SMART arm_5 712 752 IPR000225 GO:0005515
Lsi10g00540 1971 CDD RING-Ubox_PUB 212 245 IPR045210 -
Lsi10g00540 1971 Pfam U-box domain 208 269 IPR003613 GO:0004842|GO:0016567
Lsi10g00540 1971 ProSiteProfiles U-box domain profile. 207 272 IPR003613 GO:0004842|GO:0016567
Lsi10g00540 1971 Coils Coil 1070 1090 - -
Lsi10g00540 1971 Coils Coil 151 181 - -
Lsi10g00540 1971 MobiDBLite consensus disorder prediction 1822 1848 - -
Lsi10g00540 1971 SUPERFAMILY RING/U-box 197 275 - -
Lsi10g00540 1971 Coils Coil 928 948 - -
Lsi10g00540 1971 MobiDBLite consensus disorder prediction 1951 1971 - -
Lsi10g00540 1971 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 560 602 IPR000225 GO:0005515
Lsi10g00540 1971 MobiDBLite consensus disorder prediction 379 491 - -
Lsi10g00540 1971 SUPERFAMILY Tropomyosin 867 1085 - -
Lsi10g00540 1971 PANTHER U BOX DOMAIN-CONTAINING 124 784 - -
Lsi10g00540 1971 Coils Coil 1040 1060 - -
Lsi10g00540 1971 Coils Coil 1119 1146 - -
Lsi10g00540 1971 MobiDBLite consensus disorder prediction 411 449 - -
Lsi10g00540 1971 MobiDBLite consensus disorder prediction 467 481 - -
Lsi10g00540 1971 Coils Coil 1214 1265 - -
Lsi10g00540 1971 Gene3D - 498 835 IPR011989 -
Lsi10g00540 1971 SMART Ubox_2 211 265 IPR003613 GO:0004842|GO:0016567
Lsi10g00540 1971 SUPERFAMILY ARM repeat 519 781 IPR016024 -
Lsi10g00540 1971 Pfam Armadillo/beta-catenin-like repeat 551 588 IPR000225 GO:0005515
Lsi10g00540 1971 Pfam Armadillo/beta-catenin-like repeat 590 629 IPR000225 GO:0005515
Lsi10g00540 1971 Pfam Armadillo/beta-catenin-like repeat 633 670 IPR000225 GO:0005515
Lsi10g00540 1971 MobiDBLite consensus disorder prediction 1822 1929 - -
Lsi10g00540 1971 Pfam Frigida-like protein 1350 1504 IPR012474 -
Lsi10g00540 1971 Pfam Frigida-like protein 1528 1813 IPR012474 -
Lsi10g00540 1971 MobiDBLite consensus disorder prediction 309 349 - -
Lsi10g00540 1971 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 642 684 IPR000225 GO:0005515
Lsi10g00540 1971 MobiDBLite consensus disorder prediction 384 404 - -
Lsi10g00540 1971 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 683 724 IPR000225 GO:0005515
Lsi10g00540 1971 MobiDBLite consensus disorder prediction 291 356 - -
Lsi10g00540 1971 MobiDBLite consensus disorder prediction 1856 1877 - -
Lsi10g00540 1971 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 124 784 - -
Lsi10g00540 1971 Coils Coil 879 913 - -
Lsi10g00540 1971 MobiDBLite consensus disorder prediction 1889 1904 - -
Lsi10g00540 1971 Coils Coil 360 380 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00540 - - - csv:101218416 1559.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01139 Lsi-Chr5:19146629 Lsi10g00540 Lsi-Chr10:7732852 3.13E-08 dispersed
Lsi10g00540 Lsi-Chr10:7732852 Lsi10g01368 Lsi-Chr10:17834008 1.38E-09 dispersed
Lsi11g01674 Lsi-Chr11:24981859 Lsi10g00540 Lsi-Chr10:7732852 9.58E-09 dispersed
Lsi01g00483 Lsi-Chr1:4011190 Lsi10g00540 Lsi-Chr10:7732852 2.72E-76 transposed
Lsi02g01849 Lsi-Chr2:24242705 Lsi10g00540 Lsi-Chr10:7732852 1.23E-22 transposed
Lsi02g02153 Lsi-Chr2:27883391 Lsi10g00540 Lsi-Chr10:7732852 4.33E-17 transposed
Lsi02g02201 Lsi-Chr2:28460002 Lsi10g00540 Lsi-Chr10:7732852 1.65E-10 transposed
Lsi04g02146 Lsi-Chr4:28574194 Lsi10g00540 Lsi-Chr10:7732852 2.73E-15 transposed
Lsi08g01525 Lsi-Chr8:23309098 Lsi10g00540 Lsi-Chr10:7732852 1.42E-78 transposed
Lsi09g00934 Lsi-Chr9:11695617 Lsi10g00540 Lsi-Chr10:7732852 2.87E-32 transposed
Lsi09g01317 Lsi-Chr9:21027061 Lsi10g00540 Lsi-Chr10:7732852 3.86E-09 transposed
Lsi01g00933 Lsi-Chr1:7536321 Lsi10g00540 Lsi-Chr10:7732852 4.73E-07 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g01518 . 1 1097 U-box Gene Family AT5G15400 70.7 0.0e+00 1494.2
Lsi10g00540 . 168 756 U-box Gene Family AT2G23140 64.5 4.3e-114 409.1
Lsi08g01601 . 1 779 U-box Gene Family AT1G24330 59.2 8.5e-242 833.6
Lsi04g00666 . 45 799 U-box Gene Family AT1G24330 57.9 4.1e-228 788.1
Lsi08g01601 . 1 778 U-box Gene Family AT1G67530 59.9 2.1e-240 828.9
Lsi04g00666 . 45 800 U-box Gene Family AT1G67530 56.8 1.8e-223 772.7
Lsi01g00373 . 1 362 U-box Gene Family AT4G21350 61.5 4.4e-119 424.9
Lsi05g01140 . 135 460 U-box Gene Family AT3G07360 55.3 4.9e-82 301.6
Lsi04g01143 CCT 260 419 U-box Gene Family AT1G71020 72.0 3.5e-60 229.6
Lsi04g00088 . 213 414 U-box Gene Family AT1G71020 51.2 4.4e-47 186.0
Lsi10g01368 . 305 474 U-box Gene Family AT1G71020 56.2 8.4e-46 181.8
Lsi02g01363 . 288 481 U-box Gene Family AT1G71020 50.8 6.0e-44 175.6
Lsi04g01143 CCT 16 623 U-box Gene Family AT1G23030 55.4 2.3e-96 350.1
Lsi10g01368 . 143 684 U-box Gene Family AT2G28830 51.0 5.5e-100 362.1
Lsi02g01363 . 117 689 U-box Gene Family AT2G28830 56.9 6.0e-99 358.6
Lsi02g01363 . 16 720 U-box Gene Family AT3G46510 64.3 1.1e-160 563.9
Lsi10g01368 . 3 687 U-box Gene Family AT3G46510 62.2 4.4e-154 542.0
Lsi04g00088 . 9 623 U-box Gene Family AT3G46510 58.1 4.0e-123 439.1
Lsi04g00088 . 10 625 U-box Gene Family AT3G54850 68.7 1.3e-166 583.6
Lsi10g01368 . 13 677 U-box Gene Family AT3G54850 53.4 2.8e-110 396.4
Lsi02g01363 . 23 681 U-box Gene Family AT3G54850 52.6 5.2e-96 349.0
Lsi10g00826 . 93 648 U-box Gene Family AT5G42340 64.0 1.1e-115 414.5
Lsi01g01607 . 9 669 U-box Gene Family AT5G01830 57.4 1.1e-197 686.8
Lsi02g00832 . 1 714 U-box Gene Family AT1G29340 65.9 4.4e-248 854.4
Lsi05g00339 . 27 435 U-box Gene Family AT5G37490 50.5 4.5e-107 385.2
Lsi10g01136 . 10 410 U-box Gene Family AT3G52450 50.9 3.7e-117 418.7
Lsi03g01816 . 1 404 U-box Gene Family AT3G52450 50.6 1.0e-114 410.6
Lsi01g01651 . 14 155 U-box Gene Family AT3G52450 57.7 4.9e-45 179.1
Lsi03g01816 . 1 403 U-box Gene Family AT2G35930 54.5 1.7e-119 426.4
Lsi10g01136 . 10 409 U-box Gene Family AT2G35930 52.3 1.3e-116 416.8
Lsi01g01651 . 14 158 U-box Gene Family AT2G35930 56.6 1.4e-46 184.1
Lsi05g00219 . 9 424 U-box Gene Family AT3G19380 64.2 2.8e-146 515.4
Lsi05g00219 . 1 424 U-box Gene Family AT1G49780 64.6 4.5e-152 534.6
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G64660 53.9 1.4e-121 433.3
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G09800 50.8 3.6e-106 382.1
Lsi04g01467 CCT 1 454 U-box Gene Family AT3G49810 63.5 2.4e-156 548.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT3G49810 61.5 5.8e-150 527.7
Lsi04g01467 CCT 1 454 U-box Gene Family AT5G65920 62.4 2.6e-150 528.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT5G65920 62.3 6.3e-149 524.2
Lsi05g01216 . 2172 2672 U-box Gene Family AT3G49060 50.2 7.4e-137 485.0
Lsi05g02044 CCT 1 880 U-box Gene Family AT2G45910 50.2 2.5e-223 772.3
Lsi09g00480 . 22 822 U-box Gene Family AT4G25160 51.9 1.3e-214 743.4
Lsi02g01538 . 1 548 U-box Gene Family AT5G40140 53.8 2.7e-96 349.7
Lsi08g00778 . 4 813 U-box Gene Family AT1G76390 60.8 1.1e-268 922.9
Lsi08g00778 . 13 813 U-box Gene Family AT1G20780 61.8 2.4e-279 958.4
Lsi08g01601 . 1 780 U-box Gene Family AT1G27910 62.0 1.2e-264 909.4
Lsi04g00666 . 45 811 U-box Gene Family AT1G27910 62.7 1.5e-262 902.5
Lsi01g00896 . 672 1220 U-box Gene Family AT5G67530 73.8 1.6e-235 812.4
Lsi03g01872 . 12 162 U-box Gene Family AT5G67530 50.3 9.1e-42 168.7
Lsi01g00816 . 6 802 U-box Gene Family AT5G65500 50.2 1.3e-208 723.4
Lsi05g01766 . 1 517 U-box Gene Family AT1G04510 74.4 6.6e-222 766.9
Lsi05g01766 . 1 486 U-box Gene Family AT2G33340 73.6 4.6e-209 724.2
Lsi05g01139 . 9 150 U-box Gene Family AT3G07370 59.2 5.2e-40 161.8
Lsi03g01518 . 1 1097 U-box Gene Family AT5G15400 70.7 0.0e+00 1494.2
Lsi10g00540 . 168 756 U-box Gene Family AT2G23140 64.5 4.3e-114 409.1
Lsi08g01601 . 1 779 U-box Gene Family AT1G24330 59.2 8.5e-242 833.6
Lsi04g00666 . 45 799 U-box Gene Family AT1G24330 57.9 4.1e-228 788.1
Lsi08g01601 . 1 778 U-box Gene Family AT1G67530 59.9 2.1e-240 828.9
Lsi04g00666 . 45 800 U-box Gene Family AT1G67530 56.8 1.8e-223 772.7
Lsi01g00373 . 1 362 U-box Gene Family AT4G21350 61.5 4.4e-119 424.9
Lsi05g01140 . 135 460 U-box Gene Family AT3G07360 55.3 4.9e-82 301.6
Lsi04g01143 CCT 260 419 U-box Gene Family AT1G71020 72.0 3.5e-60 229.6
Lsi04g00088 . 213 414 U-box Gene Family AT1G71020 51.2 4.4e-47 186.0
Lsi10g01368 . 305 474 U-box Gene Family AT1G71020 56.2 8.4e-46 181.8
Lsi02g01363 . 288 481 U-box Gene Family AT1G71020 50.8 6.0e-44 175.6
Lsi04g01143 CCT 16 623 U-box Gene Family AT1G23030 55.4 2.3e-96 350.1
Lsi10g01368 . 143 684 U-box Gene Family AT2G28830 51.0 5.5e-100 362.1
Lsi02g01363 . 117 689 U-box Gene Family AT2G28830 56.9 6.0e-99 358.6
Lsi02g01363 . 16 720 U-box Gene Family AT3G46510 64.3 1.1e-160 563.9
Lsi10g01368 . 3 687 U-box Gene Family AT3G46510 62.2 4.4e-154 542.0
Lsi04g00088 . 9 623 U-box Gene Family AT3G46510 58.1 4.0e-123 439.1
Lsi04g00088 . 10 625 U-box Gene Family AT3G54850 68.7 1.3e-166 583.6
Lsi10g01368 . 13 677 U-box Gene Family AT3G54850 53.4 2.8e-110 396.4
Lsi02g01363 . 23 681 U-box Gene Family AT3G54850 52.6 5.2e-96 349.0
Lsi10g00826 . 93 648 U-box Gene Family AT5G42340 64.0 1.1e-115 414.5
Lsi01g01607 . 9 669 U-box Gene Family AT5G01830 57.4 1.1e-197 686.8
Lsi02g00832 . 1 714 U-box Gene Family AT1G29340 65.9 4.4e-248 854.4
Lsi05g00339 . 27 435 U-box Gene Family AT5G37490 50.5 4.5e-107 385.2
Lsi10g01136 . 10 410 U-box Gene Family AT3G52450 50.9 3.7e-117 418.7
Lsi03g01816 . 1 404 U-box Gene Family AT3G52450 50.6 1.0e-114 410.6
Lsi01g01651 . 14 155 U-box Gene Family AT3G52450 57.7 4.9e-45 179.1
Lsi03g01816 . 1 403 U-box Gene Family AT2G35930 54.5 1.7e-119 426.4
Lsi10g01136 . 10 409 U-box Gene Family AT2G35930 52.3 1.3e-116 416.8
Lsi01g01651 . 14 158 U-box Gene Family AT2G35930 56.6 1.4e-46 184.1
Lsi05g00219 . 9 424 U-box Gene Family AT3G19380 64.2 2.8e-146 515.4
Lsi05g00219 . 1 424 U-box Gene Family AT1G49780 64.6 4.5e-152 534.6
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G64660 53.9 1.4e-121 433.3
Lsi01g01136 CCT 1 407 U-box Gene Family AT5G09800 50.8 3.6e-106 382.1
Lsi04g01467 CCT 1 454 U-box Gene Family AT3G49810 63.5 2.4e-156 548.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT3G49810 61.5 5.8e-150 527.7
Lsi04g01467 CCT 1 454 U-box Gene Family AT5G65920 62.4 2.6e-150 528.9
Lsi08g01540 CCT 1 454 U-box Gene Family AT5G65920 62.3 6.3e-149 524.2
Lsi05g01216 . 2172 2672 U-box Gene Family AT3G49060 50.2 7.4e-137 485.0
Lsi05g02044 CCT 1 880 U-box Gene Family AT2G45910 50.2 2.5e-223 772.3
Lsi09g00480 . 22 822 U-box Gene Family AT4G25160 51.9 1.3e-214 743.4
Lsi02g01538 . 1 548 U-box Gene Family AT5G40140 53.8 2.7e-96 349.7
Lsi08g00778 . 4 813 U-box Gene Family AT1G76390 60.8 1.1e-268 922.9
Lsi08g00778 . 13 813 U-box Gene Family AT1G20780 61.8 2.4e-279 958.4
Lsi08g01601 . 1 780 U-box Gene Family AT1G27910 62.0 1.2e-264 909.4
Lsi04g00666 . 45 811 U-box Gene Family AT1G27910 62.7 1.5e-262 902.5
Lsi01g00896 . 672 1220 U-box Gene Family AT5G67530 73.8 1.6e-235 812.4
Lsi03g01872 . 12 162 U-box Gene Family AT5G67530 50.3 9.1e-42 168.7
Lsi01g00816 . 6 802 U-box Gene Family AT5G65500 50.2 1.3e-208 723.4
Lsi05g01766 . 1 517 U-box Gene Family AT1G04510 74.4 6.6e-222 766.9
Lsi05g01766 . 1 486 U-box Gene Family AT2G33340 73.6 4.6e-209 724.2
Lsi05g01139 . 9 150 U-box Gene Family AT3G07370 59.2 5.2e-40 161.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004594 2 4 1 2 2 1 2 1 1 1 1 1 2 0 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00540 Lsi_Chr10 FPKM 12.330951 12.970223 5.321084 5.534525 6.189992 6.145673 6.140662 8.207258 7.294835 8.278364