Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00554 ATGGATACCTTGTTCAGGTTGGTCAATGATCTTGAATCCTCTGATCAATATTCTTACAACAATTCTAGCAGCAGCTCAAAGAATTCTAGTGATCAAAACCATTATTACTATCTTCAAAAGCCACAATCTCAAGAATGCTTCAACAATTTGTTCATGGAGGAAGAAGAAGATCATTTCTCTGCATCTTCTTCTTCAAATCATCATCATCATCAACATTACCAACTTCGACAGTTTCAATGTTCTACCACCACGGCTAGTACTACATCCACCGGGTTAAAACCATTTTATCGATGGATTTATGACGAAACATTATTCTCATTAATTGGATTTACTTTTGCCCAACATCTAATGTTAAAATATGAGTTTTTCTTTGATGTACTTGGTTTTTGTGCCATCGCCATTGTCAACAACAACACTAGCCAAATCAAACAACTCATGTGGATGTTGAACGAACTCGGTTCTCCGTACGGTGACATTGATCAAAAGCTAGCATTCTACTTCCTTCAAGGCATGTTTAGTCGTGTCACCGACTCCGGTGCCAAGTGGTACGGGACCTTGGCAGCGGCGTCGGAGAAACGGTCGTGTTTCGAGTCAATGAGAAGAATGGTGCTGAAGTTTGAAGAGGTGAGTCCATGGATGACATTTGGTCATGTTGCTTCAAATGGTTCCATTATGGAAGCTTTACAAGGTGAAAAGAAGTTGCATATAATTGATATAGCCGGAAACTCCTCATTTTGCACTCAATGGCCCACTTTTATTGAAGCTCTCGCAACACAATCGGACCAAACTCCGAACCTTACCCTCACAATGTTGGTTGCAGCCAAATCCGACAGAACCATACGAGCTCATAAGAAATTGATGAAAGAAATAAGTAGAAGACTAGAGAAATTCGCAAGGCTTATGGGAGTTTCCTTCAAATTCAAACCCATTTTCCACTCCGGCGACGTTTCACAGTTCGATTTAACAAACTTAGGCATCAAACACGACGAGGCCGTCGCCGTCAACTGCGCCGGCGCCTTACGCTCCGTCGCCCCCCTCCACAACCGCCGCGATTTTCTCATATCCTTGTTTCGATCTTTGCGGCCCAGAATTATCACCGTCGTAGAGGAGGAGGCCGATCTCCACGCCGACGGCGGCGTTGACTTTGTCAAACACCTTCAGGAGTGTTTACGCTGGTTTAGGCTTTACTTTGATTCGTTGGACGGAAGTTTTCCGACAGCCACCGACGAGCAGTTCATGCTTGAACGGGCAGCTGGACGCGCCGTCGTGGACTTGCTTGCACGCGTGCCGGCGGAATCGGTGGAGAGGCGCGAGACCGCGGCGCGTTGGGCGCGTCGTTTGTATGACGGTGGCTTCAAACCGGTGTCGTTTAGCGAGGATGTAAATGACGATGTACGCTCGCTTTTGAGGAGGTACAAGGATGGGTGGACGATGACGGACGGTGACGGCGCCGGTGCCGGTGCCGGAATATTTTTGGCTTGGAAGGGGCAGCCGGTTGTTTGGGCCTCCGCGTGGGCTCCTGTACAGCAAGACGGAGAGAAGACACACGTGTGA 1554 47.43 MDTLFRLVNDLESSDQYSYNNSSSSSKNSSDQNHYYYLQKPQSQECFNNLFMEEEEDHFSASSSSNHHHHQHYQLRQFQCSTTTASTTSTGLKPFYRWIYDETLFSLIGFTFAQHLMLKYEFFFDVLGFCAIAIVNNNTSQIKQLMWMLNELGSPYGDIDQKLAFYFLQGMFSRVTDSGAKWYGTLAAASEKRSCFESMRRMVLKFEEVSPWMTFGHVASNGSIMEALQGEKKLHIIDIAGNSSFCTQWPTFIEALATQSDQTPNLTLTMLVAAKSDRTIRAHKKLMKEISRRLEKFARLMGVSFKFKPIFHSGDVSQFDLTNLGIKHDEAVAVNCAGALRSVAPLHNRRDFLISLFRSLRPRIITVVEEEADLHADGGVDFVKHLQECLRWFRLYFDSLDGSFPTATDEQFMLERAAGRAVVDLLARVPAESVERRETAARWARRLYDGGFKPVSFSEDVNDDVRSLLRRYKDGWTMTDGDGAGAGAGIFLAWKGQPVVWASAWAPVQQDGEKTHV 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8093732 8098025 - Lsi10G005540.1 Lsi10g00554 672111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00554 517 ProSiteProfiles GRAS family profile. 114 506 IPR005202 -
Lsi10g00554 517 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 506 IPR005202 -
Lsi10g00554 517 Pfam GRAS domain family 126 505 IPR005202 -
Lsi10g00554 517 PANTHER PROTEIN SHORT-ROOT 1 506 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00897 Lsi-Chr1:7231061 Lsi10g00554 Lsi-Chr10:8093732 4.16E-178 dispersed
Lsi09g01841 Lsi-Chr9:27255560 Lsi10g00554 Lsi-Chr10:8093732 1.10E-119 dispersed
Lsi10g00554 Lsi-Chr10:8093732 Lsi05g00522 Lsi-Chr5:6546210 2.11E-46 dispersed
Lsi10g00554 Lsi-Chr10:8093732 Lsi10g00057 Lsi-Chr10:977937 7.30E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26027 PF03514 GRAS 8.20E-88 CL0063 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00554 - - csv:101210294 717.998