Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi10g00560 | ATGGACGACATCGACATTCTGAAATCGACACTCTCCCCATCCGACATGTCGTCCACAATCTTCATGAACAACACGGTCAATTGTCCTCAACTCCCAGTCCCACCGCCTTATTTCTCCGACTTCTCCTCGCCGGGCAGCTCCTTATTCCAAAGCCCAACAATAATCCCGGAGGCTCCGGCACGGCGGGGACGGAGCGGGAGCGGCGGAGGAATGGCGGCGATGAGAGAGATGATATTCAGAATAGCGGCGATGCAGCCAATAGAAATAGACCCAGAAGCGATAAAGGCGCCGAAGCGACGGAACGTGAGAATCTCGAAGGATCCACAGAGCGTGGCGGCGAGGCACCGACGGGAGAGGATTAGCCAGAAAATTAGGATTCTGCAGCGGCTGGTGCCCGGCGGGACGAAGATGGACACGGCGTCGATGCTGGATGAGGCGGTGCATTATGTGAAGTTTTTGAAGAGGCAAGTGCAGACGCTGGAGCAGGCTGGATTTCATAATAATAATAATAGTAATTTTAATTTTGTTAATTCTGCGAATTTAAATTACTCTTCTGCCCTTTTCAAGGCTTGCCAAATAATGCCTGCTTCCTTGCAAATGCAGTCATGA | 609 | 51.4 | MDDIDILKSTLSPSDMSSTIFMNNTVNCPQLPVPPPYFSDFSSPGSSLFQSPTIIPEAPARRGRSGSGGGMAAMREMIFRIAAMQPIEIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNNNNSNFNFVNSANLNYSSALFKACQIMPASLQMQS | 202 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 8215560 | 8216168 | - | Lsi10G005600.1 | Lsi10g00560 | 672117 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi10g00560 | 202 | SMART | finulus | 110 | 159 | IPR011598 | GO:0046983 | |
| Lsi10g00560 | 202 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 108 | 163 | IPR036638 | GO:0046983 | |
| Lsi10g00560 | 202 | Pfam | Helix-loop-helix DNA-binding domain | 113 | 153 | IPR011598 | GO:0046983 | |
| Lsi10g00560 | 202 | Gene3D | - | 103 | 173 | IPR036638 | GO:0046983 | |
| Lsi10g00560 | 202 | PANTHER | BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN | 68 | 200 | - | - | |
| Lsi10g00560 | 202 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 104 | 153 | IPR011598 | GO:0046983 | |
| Lsi10g00560 | 202 | Coils | Coil | 143 | 163 | - | - | |
| Lsi10g00560 | 202 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 68 | 200 | IPR045843 | GO:0003700|GO:0006355 | |
| Lsi10g00560 | 202 | CDD | bHLH_AtIND_like | 105 | 161 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi01g01144 | Lsi-Chr1:9621284 | Lsi10g00560 | Lsi-Chr10:8215560 | 1.84E-46 | dispersed | |
| Lsi01g01564 | Lsi-Chr1:13843113 | Lsi10g00560 | Lsi-Chr10:8215560 | 6.46E-25 | dispersed | |
| Lsi02g02960 | Lsi-Chr2:35730450 | Lsi10g00560 | Lsi-Chr10:8215560 | 1.93E-39 | dispersed | |
| Lsi07g00548 | Lsi-Chr7:5815783 | Lsi10g00560 | Lsi-Chr10:8215560 | 6.35E-34 | dispersed | |
| Lsi08g01480 | Lsi-Chr8:22953246 | Lsi10g00560 | Lsi-Chr10:8215560 | 2.06E-50 | dispersed | |
| Lsi10g00560 | Lsi-Chr10:8215560 | Lsi04g01550 | Lsi-Chr4:23061836 | 3.11E-45 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 26028 | PF00010 | HLH | 7.00E-07 | No_clan | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi10g00560 | - | - | cmo:103497414 | 263.462 |