Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00560 ATGGACGACATCGACATTCTGAAATCGACACTCTCCCCATCCGACATGTCGTCCACAATCTTCATGAACAACACGGTCAATTGTCCTCAACTCCCAGTCCCACCGCCTTATTTCTCCGACTTCTCCTCGCCGGGCAGCTCCTTATTCCAAAGCCCAACAATAATCCCGGAGGCTCCGGCACGGCGGGGACGGAGCGGGAGCGGCGGAGGAATGGCGGCGATGAGAGAGATGATATTCAGAATAGCGGCGATGCAGCCAATAGAAATAGACCCAGAAGCGATAAAGGCGCCGAAGCGACGGAACGTGAGAATCTCGAAGGATCCACAGAGCGTGGCGGCGAGGCACCGACGGGAGAGGATTAGCCAGAAAATTAGGATTCTGCAGCGGCTGGTGCCCGGCGGGACGAAGATGGACACGGCGTCGATGCTGGATGAGGCGGTGCATTATGTGAAGTTTTTGAAGAGGCAAGTGCAGACGCTGGAGCAGGCTGGATTTCATAATAATAATAATAGTAATTTTAATTTTGTTAATTCTGCGAATTTAAATTACTCTTCTGCCCTTTTCAAGGCTTGCCAAATAATGCCTGCTTCCTTGCAAATGCAGTCATGA 609 51.4 MDDIDILKSTLSPSDMSSTIFMNNTVNCPQLPVPPPYFSDFSSPGSSLFQSPTIIPEAPARRGRSGSGGGMAAMREMIFRIAAMQPIEIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNNNNSNFNFVNSANLNYSSALFKACQIMPASLQMQS 202
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 8215560 8216168 - Lsi10G005600.1 Lsi10g00560 672117
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00560 202 SMART finulus 110 159 IPR011598 GO:0046983
Lsi10g00560 202 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 108 163 IPR036638 GO:0046983
Lsi10g00560 202 Pfam Helix-loop-helix DNA-binding domain 113 153 IPR011598 GO:0046983
Lsi10g00560 202 Gene3D - 103 173 IPR036638 GO:0046983
Lsi10g00560 202 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 68 200 - -
Lsi10g00560 202 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 153 IPR011598 GO:0046983
Lsi10g00560 202 Coils Coil 143 163 - -
Lsi10g00560 202 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 68 200 IPR045843 GO:0003700|GO:0006355
Lsi10g00560 202 CDD bHLH_AtIND_like 105 161 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01144 Lsi-Chr1:9621284 Lsi10g00560 Lsi-Chr10:8215560 1.84E-46 dispersed
Lsi01g01564 Lsi-Chr1:13843113 Lsi10g00560 Lsi-Chr10:8215560 6.46E-25 dispersed
Lsi02g02960 Lsi-Chr2:35730450 Lsi10g00560 Lsi-Chr10:8215560 1.93E-39 dispersed
Lsi07g00548 Lsi-Chr7:5815783 Lsi10g00560 Lsi-Chr10:8215560 6.35E-34 dispersed
Lsi08g01480 Lsi-Chr8:22953246 Lsi10g00560 Lsi-Chr10:8215560 2.06E-50 dispersed
Lsi10g00560 Lsi-Chr10:8215560 Lsi04g01550 Lsi-Chr4:23061836 3.11E-45 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26028 PF00010 HLH 7.00E-07 No_clan Lsi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00560 - - cmo:103497414 263.462