Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00565 ATGGTGAGGAAATGTAGAGGAGTTGCAGAGATTGCAGTCATGGAGGTCGACCTAAGAACTACCAGACCTCCACCTGACAACAAGAGAAAGATCACCGCCGGAACAGACTTTGAAATCTCGACCACGACGACTTCATTTCTCAAGCTCCGGAGCCGCCGACGCCGTGTTCTTTTGCCAGAAAATTCGGTTCCGCCAGCGGAGAGAACCTCTGTTAGCCCTACCTCCGATGACGATGCGTCTGCCTTTTGCTGCTCCAGTAACGCCTGCAGTGAGATTGTTGAGGAGAGCATCAAGTTCGTAGATCTGGAGGACGAGAATGATGAACATGGAGTCGCGTTCAAATCCAGCCGAGAAAGCAGAGAGACGACTCCGTCTAGCGAATTCCGATTACCGCCGTCCGGCGATATGGAGTCTCCCGCAAGGAAAAGCGAAGCAACTTCCGGCAATAGATCTTCGTCTTCGGTGAAGATGCCGGCGGAATCGGAGCTGGAAGAATTCTTCATCGCCGCCGAGAAAAACATACAGAAACGTTTCGCTGAGAAGTATAATTACGATATTGTTGAGGATGTTCCGTTGGAAGGACGTTACGAATGGGTTCGAGTAAAGCCATAA 612 50.65 MVRKCRGVAEIAVMEVDLRTTRPPPDNKRKITAGTDFEISTTTTSFLKLRSRRRRVLLPENSVPPAERTSVSPTSDDDASAFCCSSNACSEIVEESIKFVDLEDENDEHGVAFKSSRESRETTPSSEFRLPPSGDMESPARKSEATSGNRSSSSVKMPAESELEEFFIAAEKNIQKRFAEKYNYDIVEDVPLEGRYEWVRVKP 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8276113 8277892 + Lsi10G005650.1 Lsi10g00565 672122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00565 203 MobiDBLite consensus disorder prediction 110 159 - -
Lsi10g00565 203 Pfam Cyclin-dependent kinase inhibitor 158 201 IPR003175 GO:0004861|GO:0005634|GO:0051726
Lsi10g00565 203 MobiDBLite consensus disorder prediction 56 78 - -
Lsi10g00565 203 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 7 3 203 - -
Lsi10g00565 203 MobiDBLite consensus disorder prediction 110 124 - -
Lsi10g00565 203 Gene3D p27 155 203 IPR044898 -
Lsi10g00565 203 PIRSF CKI_KRP_plant 1 203 IPR044275 GO:0004861|GO:0045736|GO:0051726
Lsi10g00565 203 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 4-RELATED 3 203 IPR044275 GO:0004861|GO:0045736|GO:0051726
Lsi10g00565 203 MobiDBLite consensus disorder prediction 140 158 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00565 - - - cmax:111470405 280.411
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00484 Lsi-Chr3:5526476 Lsi10g00565 Lsi-Chr10:8276113 1.38E-21 dispersed
Lsi05g01114 Lsi-Chr5:18933926 Lsi10g00565 Lsi-Chr10:8276113 5.16E-11 dispersed
Lsi05g01832 Lsi-Chr5:25611094 Lsi10g00565 Lsi-Chr10:8276113 1.45E-14 dispersed
Lsi09g01153 Lsi-Chr9:18469921 Lsi10g00565 Lsi-Chr10:8276113 1.47E-14 dispersed
Lsi10g00565 Lsi-Chr10:8276113 Lsi02g02082 Lsi-Chr2:27011801 1.18E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g435 . . . . . . Bma05g00520 . Cmo19g00630 Cmo11g01354 . . . . Sed10g2039 Cpe04g00273 Cpe15g00495 Bhi05g01129 Tan02g0899 Cmetu01g0736 . Hepe02g0578 . . Cla02g00593 Cam02g0622 Cec02g0621 Cco02g0637 Clacu02g0626 Cmu02g0622 Cre02g0946 . . . . Lsi10g00565 Csa07g00769 . Cme01g00040 . . . . . . . . . Cmo02g00567 . Cma11g01758 Cma19g00611 . Car19g00464 . . . . . . . . . . . . . . . . . . Chy01g00046 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010109 0 2 2 0 3 1 1 1 1 0 1 1 2 0 0 2 1 3 2 1 0 1 1 1 1 1 0 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00565 Lsi_Chr10 FPKM 0.039162 0.135883 0.750345 1.04029 5.649821 4.849594 6.017063 0.908975 0.826087 0.955088