Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00574 ATGGATCGGGCGACGATTACTGTGGGGCCGGCCATGGATATGCCGATTATGCACGACAGTGACCGCTACGATTTCGTCCGAGATATCGGTTCCGGGAACTTTGGGGTTGCCAGGCTGATGAGAGACAAGCATACCAAAGAGCTCGTTGCTGTCAAATATATTGAGCGAGGCGATAAGATAGATGAAAATGTTCAGCGAGAAATCATCAATCACAGGTCACTGAGGCACCCTAACATAGTCAGGTTCAAAGAGGTCATCTTGACCACTACCCATCTTGCAATTGTAATGGAATATGCATCCGGAGGAGAGCTCTTTGAGCGTATTAGCAATGCAGGACGCTTTAGTGAGGATGAGGCTCGCTTCTTCTTTCAACAACTAATATCGGGAGTTAGCTACTGCCATGCAATGCAAGTGTGTCACCGGGACTTGAAGTTGGAGAACACTTTACTGGATGGAAGTCCAGCCCCTCGTTTGAAAATATGTGACTTTGGCTACTCAAAGTCATCTGTGCTCCATTCACAACCAAAGTCAACTGTCGGAACACCTGCATACATTGCTCCAGAAGTGCTATTAAGGCAAGAATATGATGGCAAGATTGCAGATGTATGGTCATGTGGAGTGACCCTCTACGTAATGCTTGTTGGAGCCTATCCTTTCGAGGATCCTGATGAACCAAAGGATTTCCGAAAGACAATACAAAGAATCCTAGGTGTCCAGTATTCCATTCCTGACTGTGTTCAAATATCTCTCGAGTGTCGCCACCTAATATCAAGGATTTTTGAGGCAGATCCTGCAACGAGAATCACTATTCCTGAGATTAAGAACCATTCCTGGTTTTTGAAGAATCTGCCATCGGACTTGATGGATGAAAACACAATGGGAAATCAATTTGAAGAGCCTGATCAACCAATGCAGAGCCTCGATGCAATAATGCAGATAATTGCTGAGGCCACAATACCAGCAGTTGGTTCACATGGCCTTATGTGCATGGCAGATAACCTTGACATGGACGACGATGACGACATGGATGATCTGGACGATGAATCTGAGCTTGATATTGAAAGCAGCGGTGAAATAGTGTATGCAATTTGA 1092 45.24 MDRATITVGPAMDMPIMHDSDRYDFVRDIGSGNFGVARLMRDKHTKELVAVKYIERGDKIDENVQREIINHRSLRHPNIVRFKEVILTTTHLAIVMEYASGGELFERISNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPDEPKDFRKTIQRILGVQYSIPDCVQISLECRHLISRIFEADPATRITIPEIKNHSWFLKNLPSDLMDENTMGNQFEEPDQPMQSLDAIMQIIAEATIPAVGSHGLMCMADNLDMDDDDDMDDLDDESELDIESSGEIVYAI 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8367092 8373829 - Lsi10G005740.1 Lsi10g00574 672131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00574 363 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Lsi10g00574 363 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Lsi10g00574 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Lsi10g00574 363 SUPERFAMILY Protein kinase-like (PK-like) 21 296 IPR011009 -
Lsi10g00574 363 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2E-LIKE 14 357 - -
Lsi10g00574 363 PANTHER SERINE/THREONINE KINASE 14 357 - -
Lsi10g00574 363 Gene3D Transferase(Phosphotransferase) domain 1 99 286 - -
Lsi10g00574 363 ProSiteProfiles Protein kinase domain profile. 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00574 363 SMART serkin_6 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi10g00574 363 Pfam Protein kinase domain 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00574 K14498 SNRK2; serine/threonine-protein kinase SRK2 [EC:2.7.11.1] - csv:101206398 695.271
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi01g00790 Lsi10g00574 CCT
Lsi10g00574 Lsi11g01030 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00790 Lsi-Chr1:6166591 Lsi10g00574 Lsi-Chr10:8367092 1.35E-145 dispersed
Lsi01g02055 Lsi-Chr1:28610095 Lsi10g00574 Lsi-Chr10:8367092 2.02E-101 dispersed
Lsi10g00314 Lsi-Chr10:5033307 Lsi10g00574 Lsi-Chr10:8367092 3.36E-152 dispersed
Lsi10g00574 Lsi-Chr10:8367092 Lsi11g01030 Lsi-Chr11:17668923 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g470 . . . . . . . . . Cmo11g01342 Cma02g00437 . Car02g00291 . . Cpe04g00263 . Bhi05g01154 . . . . . . Cla02g00576 . . . . . . Cone12ag1115 Cone8ag1156 Cone3ag0926 . Lsi10g00574 Csa07g00785 Chy11g00432 Cme01g00025 Blo04g00493 . . Bda14g00524 Bpe15g00890 . Bma03g00525 . . Cmo02g00439 . Cma11g01769 . Car11g01080 . . Cpe05g01226 Bhi10g02071 . . . . . . . . . . . . . Lsi11g01030 Csa02g01204 Chy01g00031 Cme11g00299
Vvi7g886 . Blo16g00298 . Bda10g00076 . . . Bma15g01056 Cmo03g00865 Cmo07g00560 Cma02g00552 . Car02g00383 . . Cpe19g00750 . . . . . . . . Cla01g01819 Cam01g1905 . . . . . . . . . Lsi01g00790 . . Cme08g00750 . Blo06g00071 . . Bpe13g00174 . . Bma06g00296 . Cmo02g00562 . Cma03g00819 Cma07g00557 Car03g00750 Car07g00494 Cpe10g00549 Cpe05g01131 Bhi10g02073 . . . . . . . . . . . . . Lsi10g00574 . Chy02g00734 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000065 7 16 8 7 7 11 10 10 11 8 11 11 10 12 10 9 11 14 10 10 9 6 8 6 7 11 4 12 10 7 283
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83948 PF00069 Pkinase 2.70E-72 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00574 Lsi_Chr10 FPKM 58.660072 57.582386 56.634804 51.392796 55.900795 62.683132 61.053024 38.55526 35.211185 36.543987