Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00586 ATGTCCCAACGAATTTGCAGTGATTCAAAGACTATATATAATTGTGATTCTATGTCACAACAAGACTACCAACAAGCGGCGGCGGCGGCAGCGGCGGCGGCAGGTTTCTTCACGCCTTTTTCCAATGGCTTTGATAGATCCTCCACAACCCACCAAGACTCTCAACAACACTACCAACACATAGCCCACCAGATCCGTAAGGAGAAGCTCCGCCTCCAAGGCTTCGACCCGCCGCCACATCCACCGTCGTTAGTTGGAATTGACGACGATGAAGACGACCAATCCGCTGTCCACCATGTCTACGACTCCGCCGGAATTTTATCCGAAATGTTCAATTTCCCTCCGCCTCCACCACCACCGCCACCGCAAACCGACTGGTACGGTAACCGGCAAACAATCAACGCAGCGGACTCGGCGGTCGCCATGCAACTTTTTCTAATGAACCCGAATCCCCGGTCGCCATCTCCGCCGCCACCACCGCCTTCGTCGACACTCCATATGCTTCTTCCAAACCCATCTTCAGGAGGGTCTTATGGACAATTCACATGGGGGGTAATACCGGAGCAAGAAACAAGAGACCATTCTTCATCAAACCCTAACGAAGGGCGTCTTTCGTTGTCATTGTCATCGTCTTTGGAAGCTGCAAAAGCGGAGGAATTGAGAATGGGTGACAGCACCAACGGGTTACTTTATCACCACCACCATCACCCACAACATGTCCATGTTGGATCAATTGGGTCCTCCAATCCACTGGGAGTTGTCAACTTATTGAGAAACTCAAAATATGTCAAAGCTGCACAAGAATTATTAGAGGAGTTTTGTAGCGTTGGAAGAGGTCAGTTTAAGAGAAATAATAATAATAATCATGATAACAAATTTAATAATAATAAATCAAATTTGCCTTCCAACTCCAATTCCCACGGTGGCGGCGGCGACGGTGCCGGAGTTTCTTCCTCTTCGACAAAGGATCATCAGCCAGCCTTGTCAGCAGCTGATAGAATTGAACATCAAAGAAGGAAGGTGGATCGAAGATACAACCATTACTGCGAGCAGATGCAAATGGTGGTGAATTCATTCGACGAGGTGATGGGGTTTCGGGCGGCGGTGCCGTACACGGCGTTGGCACAAAAGGCAATGTCAAGGCATTTCAAGTGTCTAAAGGACGCTATATCAACGCAGTTGAAACATAGTTGCGAGATGTTGGGAGAAAAAGATGGAGGAATAGCTGGAAGAGCCTCAGGAATAACAAAGGGAGAGACTCCAAGACTTAAGCTCTTGGAGCAAAGCCTTAGGCAGCAAAGAGCTTTCCACCAAATGGGCATTATGGAACAAGAAGCTTGGCGTCCCCAACGCGGTTTACCCGAACGCTCTGTCAATATCTTGCGAGCTTGGCTCTTCGAGCATTTCCTTCATCCGTGCAAGTTGAGAGCTGAAATTGAGTACTTTCAGGAGAGGTAA 1458 48.49 MSQRICSDSKTIYNCDSMSQQDYQQAAAAAAAAAGFFTPFSNGFDRSSTTHQDSQQHYQHIAHQIRKEKLRLQGFDPPPHPPSLVGIDDDEDDQSAVHHVYDSAGILSEMFNFPPPPPPPPPQTDWYGNRQTINAADSAVAMQLFLMNPNPRSPSPPPPPPSSTLHMLLPNPSSGGSYGQFTWGVIPEQETRDHSSSNPNEGRLSLSLSSSLEAAKAEELRMGDSTNGLLYHHHHHPQHVHVGSIGSSNPLGVVNLLRNSKYVKAAQELLEEFCSVGRGQFKRNNNNNHDNKFNNNKSNLPSNSNSHGGGGDGAGVSSSSTKDHQPALSAADRIEHQRRKVDRRYNHYCEQMQMVVNSFDEVMGFRAAVPYTALAQKAMSRHFKCLKDAISTQLKHSCEMLGEKDGGIAGRASGITKGETPRLKLLEQSLRQQRAFHQMGIMEQEAWRPQRGLPERSVNILRAWLFEHFLHPCKLRAEIEYFQER 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8505997 8512007 - Lsi10G005860.1 Lsi10g00586 672143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00586 485 SMART prehox3 251 392 IPR006563 -
Lsi10g00586 485 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 84 472 - -
Lsi10g00586 485 MobiDBLite consensus disorder prediction 279 326 - -
Lsi10g00586 485 MobiDBLite consensus disorder prediction 150 166 - -
Lsi10g00586 485 MobiDBLite consensus disorder prediction 147 171 - -
Lsi10g00586 485 MobiDBLite consensus disorder prediction 279 337 - -
Lsi10g00586 485 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 84 472 - -
Lsi10g00586 485 Gene3D - 453 484 - -
Lsi10g00586 485 Pfam Associated with HOX 257 391 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01043 Lsi-Chr1:8628619 Lsi10g00586 Lsi-Chr10:8505997 6.09E-106 dispersed
Lsi09g00232 Lsi-Chr9:2405783 Lsi10g00586 Lsi-Chr10:8505997 2.29E-44 dispersed
Lsi10g00586 Lsi-Chr10:8505997 Lsi10g01137 Lsi-Chr10:15662058 2.40E-35 dispersed
Lsi10g00586 Lsi-Chr10:8505997 Lsi03g01817 Lsi-Chr3:29661765 1.18E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00586 - - csv:101212977 699.893