Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00645 ATGTCATCATCAAATTCACCATGTGCGGCGTGCAAATTCCTCCGACGAAAATGCACACAAGAATGCGTATTCGCACCATATTTCCCACCAGATCAGCCACAGAAATTCGCCAACGTCCACAAAGTATTCGGCGCAAGTAATGTAGCCAAACTCTTAAACGAACTGAATGCAACACAACGTGAAGACGCCGTTAATTCATTAGCCTACGAAGCGGAATTCCGTTTACGTGACCCAGTCTACGGTTGCGTTGGTTTAATCTCCGTCCTTCAACACAAACTCAAACAAATGCAAAGCGATCTCTACAATGCTAAAAAAGAACTCGCTTCTTACATTGGTCCTCAAGCCATGCTCCCAATTCTCCAACCACAACCACCCACACCAACCCCTTCCTCCTCCGCCGCCGCCGCCGCTTTACTTCCTTACAACATCTCCCCCATGTTGGGTATTCCCCCTTCCGCCGCTCCCACCACCGCTACCCCTGGCTCTTCCCAACAGATGCTCATTCGTGACTCGGCTCATCAGCATCAAATGCAGCAGCAACAATTGTTTGAGGCTCAGCAATTGGCAGCAGCCGTGGCGGCGAGAGAGCAACAAGAAATGTTTAGAGCTTATGAGCATAAACAAACCCAACAACAACAGCAGCAGCAACAACGACAACATGAGATTTTGAGGTTTAATGGGTTTGATTCTGGTGGTGGGTTTAATAATCAAATGAATTCTTCAGGCTCTAATTTGACATTGGGGACTTTTGTTGATAATAATACCTATCAAATCCAAACGCAACCTGAACATTCACATTCTCATTCTCATCCGCTACAAGTACAGCTATTTCTTCAACCTCAACAAACACAACAGCTTGATCAATCACACCAACCTCATCCACATCAATCTCACAAGCCTGATCCTACTCCTGCAGCAGATGATGGTAGGAATAATAATATTAACATTGGTCCCTCTTGTTAA 963 45.59 MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQSDLYNAKKELASYIGPQAMLPILQPQPPTPTPSSSAAAAALLPYNISPMLGIPPSAAPTTATPGSSQQMLIRDSAHQHQMQQQQLFEAQQLAAAVAAREQQEMFRAYEHKQTQQQQQQQQRQHEILRFNGFDSGGGFNNQMNSSGSNLTLGTFVDNNTYQIQTQPEHSHSHSHPLQVQLFLQPQQTQQLDQSHQPHPHQSHKPDPTPAADDGRNNNINIGPSC 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9014651 9015613 + Lsi10G006450.1 Lsi10g00645 672202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00645 320 Coils Coil 86 106 - -
Lsi10g00645 320 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Lsi10g00645 320 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 1 288 - -
Lsi10g00645 320 MobiDBLite consensus disorder prediction 281 320 - -
Lsi10g00645 320 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Lsi10g00645 320 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 288 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00111 Lsi-Chr1:1153248 Lsi10g00645 Lsi-Chr10:9014651 2.35E-34 dispersed
Lsi10g00645 Lsi-Chr10:9014651 Lsi11g00839 Lsi-Chr11:10483445 3.02E-60 dispersed
Lsi10g00645 Lsi-Chr10:9014651 Lsi06g01582 Lsi-Chr6:26226856 7.79E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
26037 PF03195 LOB 1.90E-41 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00645 - - cmos:111434896 383.645