Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00648 ATGGACAGGTTCATCAAGGACTTCTTAAGTAGTGACAAGTTACATTTTGAAGTTCCAGGAAAGACTATCTTACAGTCATCATCTTCTGAGCATATCAACCACAACATCAATGCTTCAGTGGAAACCTCTTCTAGAGTGGCATGTCATAGCAACTTAGTTTCTTTACAGTCCATTAATGGAAAATGTGATACCTCTCTCAATTCAGCTCTAACTGAAAATCATGTGATAAACACTCTTTTAAGCAGCAAAAGTGATCCAAACTCAGCATTAAAGTACTTCAAAAGGATTAAGAAGGAGATAGACTTTGCCAAGTGCACTGATGCTATATGTATCTTGCTTCTCATTTTGATGAATTCGGCAAAGACACATAGATTAGCTCAGTATTTGCTCAATCAATTTGCTTCAGGAAACTCAGTTCCCTCTAGTTGTCTTACGGACCGTTTAGTGGAATGCACAAAACTGTACAGTTTTCCATTGGATATTCAGGTTTTTAATTATTTGTTGAATAGTTACGTTAGAGCTAACAAAATTGAAGAAGCTCTTCATTGTTTTAATAAGATTGTAGAATTTGATATAACGCCATCAATTCAGTATATGAATGTTCTTTTGACTGCCATGGTTAGGAAAAACATGATTTGTGAAGCACGGGAGTTGCATAACAAAATGTTGCTGGTAGGAGTTCCTGGCGACTGTTTTACATTACATGCTATGTTGCGTGCTTGTTTGAAGGAAGGGAATATTTTGGAGGCAGAGCAACATTTTTTACAAGCAAAAGAAAGAGGAGTGAAACTTGATCAAAAAGCATATAGTATTTTTGTCCATGTTGTTTGTTTGAAACGGAACTCTGGATATGCTTTGTCTTTGTTAAGAGAGATGAGGGCAACAGGCTGGGTTCCTTCTGAGGATACATTTACAAGTGTTATTACTGCTTGTGTGAAGGAAAGGAATATGACAGAGGCTTTGAGGCTGAAAGATGACATGGTTAATTGTGGGAAGTCTATGAATTTGGCTGTTGCAACAAGTTTAATGAAGGGTTATTGCATGCAAGGAGACCTGAGAAGTGCTTTAGATCTCATGAATGAAATAAGTGAGAGTGGTCTGGTGCCCAACAAAGTTACATACTCGGTTCTGATTGATGGTTGTTGTAAGAATGGGAATATTGAAAAGGCATATGAATTTTACTCTGAAATGAAAACTAAGGGCATTCGGTCTAGTGTTTATTCTTTGAATTCTATAATACAAGGGTATTTGGAATGTCAATCTTTGCAAAATGCATTAACAATGTTTAATGATGCGGTTGAGAGTGGTCTTGCAAATGTTTTCACGTTTAATACTTTATTGTCTTGGCTTTGTAAGGGGGGTAAGGTTAATGAAGCTTGCAATTTATGGGATGAGGTGATTGTTAAGGGTATCAGTCCTAATGCAGTTTCTTACAATAACATAATACTTGGTCACTGTAGAGAAGGTAATATTAATGCAGCATGTAAGGTGTACAAGGAGATGCTAGATAATGGTTTTACCCCAAATGTAGTTACCTTTTCTATTCTAATGGATGGTTATTTCAAGAAAGGTGATATTGACAATGCTTTTAGTATATTTCACAGGATGATAGATGCTAACATTCTCCCCACAGACGTCACGTTAGGCACTATTATCAAAGGTTTGTGCAAAGCTGGTCGTACCTCTGAGGGAAGGGATATGTTTAATAAGTTTGTTTCTCAAGGCTTTGTTCCTACGTGTTTGGTTTACAATATTATTATTGATGGTTTCATCAAGGAAGGTGACATTAATTTGGCCTTGAATGTGTATAGGGAAATGTGTGAAGTTGGCATTACTCCTAGTATTGTCACCTATACGTCCTTGATTGATGGATTTTGTAAAAGCAACAATATAGATCTTGCTTTAAAGTTGCAGAATGATATGAAAAGGAAGGGTCTTGAAATGGACATTACAGCATATGGCGCACTCATTGACAGTTTTTGCAAAAGAAGGGATATGAAAAGTGCGCATGAACTTTTTAATGAACTTCTGCGAGCTGGTTTATCTCCAAATGGTATCATTTACAATACCATGATTGCTGGGTTTAAGAATATGAACAACATGGAAGCAGCTATTGACTTATATAAGAATATGGTGAATGAGGGTATTCCATGTGATTTGTTAACGTATACCTCATTGATTGATGGACTGCTGAAAGAAGGAAGACTTCTCTACGCATCAGATCTCTACACTGAAATGCTTTCCAAGGGTATGTTGCCTGATGATCGAACACAAACAGTTCTAATCAATGGTCTTTGTAACAAAAGGCAATTGGAGAATGCACGCAAGATTTTGGAAGATATGAGTGAAAGAAACATGACTTCTAGTGTTCTCATTTATAACACATTAATAGCTGGGCACTTTAAGGAAGGGAATTTGCAAGAGGCTTTTAGGTTGCATGATGAGATGCTTGCTAGAGGTCTTGTTCCTGATAATACTACCTATGATATTCTTGTCAGTGGAGAGTTCAAAGGAGATTGTACTTTTAGTAGAGATTTGAGTTTCTAA 2547 36.67 MDRFIKDFLSSDKLHFEVPGKTILQSSSSEHINHNINASVETSSRVACHSNLVSLQSINGKCDTSLNSALTENHVINTLLSSKSDPNSALKYFKRIKKEIDFAKCTDAICILLLILMNSAKTHRLAQYLLNQFASGNSVPSSCLTDRLVECTKLYSFPLDIQVFNYLLNSYVRANKIEEALHCFNKIVEFDITPSIQYMNVLLTAMVRKNMICEARELHNKMLLVGVPGDCFTLHAMLRACLKEGNILEAEQHFLQAKERGVKLDQKAYSIFVHVVCLKRNSGYALSLLREMRATGWVPSEDTFTSVITACVKERNMTEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGDLRSALDLMNEISESGLVPNKVTYSVLIDGCCKNGNIEKAYEFYSEMKTKGIRSSVYSLNSIIQGYLECQSLQNALTMFNDAVESGLANVFTFNTLLSWLCKGGKVNEACNLWDEVIVKGISPNAVSYNNIILGHCREGNINAACKVYKEMLDNGFTPNVVTFSILMDGYFKKGDIDNAFSIFHRMIDANILPTDVTLGTIIKGLCKAGRTSEGRDMFNKFVSQGFVPTCLVYNIIIDGFIKEGDINLALNVYREMCEVGITPSIVTYTSLIDGFCKSNNIDLALKLQNDMKRKGLEMDITAYGALIDSFCKRRDMKSAHELFNELLRAGLSPNGIIYNTMIAGFKNMNNMEAAIDLYKNMVNEGIPCDLLTYTSLIDGLLKEGRLLYASDLYTEMLSKGMLPDDRTQTVLINGLCNKRQLENARKILEDMSERNMTSSVLIYNTLIAGHFKEGNLQEAFRLHDEMLARGLVPDNTTYDILVSGEFKGDCTFSRDLSF 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9047967 9051845 - Lsi10G006480.1 Lsi10g00648 672205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00648 848 SUPERFAMILY HCP-like 82 264 - -
Lsi10g00648 848 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 34 841 - -
Lsi10g00648 848 TIGRFAM PPR: pentatricopeptide repeat domain 303 335 IPR002885 -
Lsi10g00648 848 TIGRFAM PPR: pentatricopeptide repeat domain 441 475 IPR002885 -
Lsi10g00648 848 TIGRFAM PPR: pentatricopeptide repeat domain 582 614 IPR002885 -
Lsi10g00648 848 TIGRFAM PPR: pentatricopeptide repeat domain 476 510 IPR002885 -
Lsi10g00648 848 TIGRFAM PPR: pentatricopeptide repeat domain 687 719 IPR002885 -
Lsi10g00648 848 TIGRFAM PPR: pentatricopeptide repeat domain 757 786 IPR002885 -
Lsi10g00648 848 TIGRFAM PPR: pentatricopeptide repeat domain 340 370 IPR002885 -
Lsi10g00648 848 TIGRFAM PPR: pentatricopeptide repeat domain 511 544 IPR002885 -
Lsi10g00648 848 TIGRFAM PPR: pentatricopeptide repeat domain 792 824 IPR002885 -
Lsi10g00648 848 TIGRFAM PPR: pentatricopeptide repeat domain 616 649 IPR002885 -
Lsi10g00648 848 TIGRFAM PPR: pentatricopeptide repeat domain 652 684 IPR002885 -
Lsi10g00648 848 TIGRFAM PPR: pentatricopeptide repeat domain 546 580 IPR002885 -
Lsi10g00648 848 TIGRFAM PPR: pentatricopeptide repeat domain 722 754 IPR002885 -
Lsi10g00648 848 TIGRFAM PPR: pentatricopeptide repeat domain 372 403 IPR002885 -
Lsi10g00648 848 TIGRFAM PPR: pentatricopeptide repeat domain 163 195 IPR002885 -
Lsi10g00648 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 789 823 IPR002885 -
Lsi10g00648 848 Gene3D Tetratricopeptide repeat domain 594 699 IPR011990 GO:0005515
Lsi10g00648 848 Gene3D Tetratricopeptide repeat domain 505 593 IPR011990 GO:0005515
Lsi10g00648 848 Gene3D Tetratricopeptide repeat domain 74 277 IPR011990 GO:0005515
Lsi10g00648 848 Pfam PPR repeat 439 465 IPR002885 -
Lsi10g00648 848 Pfam PPR repeat 540 570 IPR002885 -
Lsi10g00648 848 Pfam PPR repeat 644 675 IPR002885 -
Lsi10g00648 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 474 508 IPR002885 -
Lsi10g00648 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Lsi10g00648 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 544 578 IPR002885 -
Lsi10g00648 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 194 IPR002885 -
Lsi10g00648 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Lsi10g00648 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 649 683 IPR002885 -
Lsi10g00648 848 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 34 841 - -
Lsi10g00648 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 684 718 IPR002885 -
Lsi10g00648 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 509 543 IPR002885 -
Lsi10g00648 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 230 264 IPR002885 -
Lsi10g00648 848 Gene3D Tetratricopeptide repeat domain 436 504 IPR011990 GO:0005515
Lsi10g00648 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 614 648 IPR002885 -
Lsi10g00648 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 439 473 IPR002885 -
Lsi10g00648 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 719 753 IPR002885 -
Lsi10g00648 848 Gene3D Tetratricopeptide repeat domain 278 435 IPR011990 GO:0005515
Lsi10g00648 848 Gene3D Tetratricopeptide repeat domain 700 840 IPR011990 GO:0005515
Lsi10g00648 848 Pfam Pentatricopeptide repeat domain 158 207 IPR002885 -
Lsi10g00648 848 Pfam Pentatricopeptide repeat domain 257 313 IPR002885 -
Lsi10g00648 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 579 613 IPR002885 -
Lsi10g00648 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 754 788 IPR002885 -
Lsi10g00648 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Lsi10g00648 848 Pfam PPR repeat family 338 383 IPR002885 -
Lsi10g00648 848 Pfam PPR repeat family 473 522 IPR002885 -
Lsi10g00648 848 Pfam PPR repeat family 789 834 IPR002885 -
Lsi10g00648 848 Pfam PPR repeat family 582 627 IPR002885 -
Lsi10g00648 848 Pfam PPR repeat family 683 732 IPR002885 -
Lsi10g00648 848 Pfam PPR repeat 759 785 IPR002885 -
Lsi10g00648 848 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Lsi10g00648 848 SUPERFAMILY HCP-like 380 615 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00648 - - K15336 csv:101216262 1435.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi10g00648 Lsi-Chr10:9047967 Lsi10g01354 Lsi-Chr10:17747218 2.31E-44 dispersed
Lsi10g01449 Lsi-Chr10:18572240 Lsi10g00648 Lsi-Chr10:9047967 2.52E-06 dispersed
Lsi10g00648 Lsi-Chr10:9047967 Lsi04g00798 Lsi-Chr4:7544236 1.37E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g536 Blo02g00788 . . Bda08g00906 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1132 Cone10ag1142 Lsi10g00648 . . . . . . . . . . . . . . . . . . . . Bhi10g02041 . . . . . . . . . . . . . . . . Cme11g00226
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005083 1 7 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 5 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00648 Lsi_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.219325 0.042526 0.083466