Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00656 ATGATCCAAGCCAAAAAAAGAAACAAACACATACACACCATGGCTTCTTCAAATCCCATATCTCTCCTCACATTTCTCACTTTCCTTTTCCTCCTCTCTTCTTCATCGTTCGCCGTCGTTCCAACTGCGGAGATTTGCCAATCCACCACGTCCCCCTCCTTCTGCAAATCTTTCCTTCCCAACTCCCCCGCCTCCATCCACTCACATTGTCGCTTCACTCTCCGCAACGCCCTCAACCATGCACGCACCTTCTTGACACTCATCGACGCCCACCTCAACCTCCTTCCCTTCCCTTCCGCCCTCCACGACTGTCGTGGCCTTGCGGAAGCCAACCTCGACTTCATATCCCAAACTTTCTCCATAGTCAACTTCACAACCATGGCCCTTCCTTATTACCAAGCCCATGAGATGATGTCCTTGATAAGTGCAATGATCACCAATGAAGACACTTGTTATGAAGGACTGGTAGGTTTGGGCTCGGTCGTGGGCTTGGTTGATAAGGTGTTGGAGGCCATCTCTTTTGATAGAAAGCTATATAGTTTGTATCTTTCTTTGTTCAAAATGGGTTGGGTTTCTGAGGACATGAAGGCTCCTATGTTGCCAAACATGAACCATTTTGGGGTGGGGAAAGGGCAGTTGAAGCTTAAAATGTCGCCCAAAGACCGTGCGTATTATGAGCGCTTGGTTCATAGGAAGAAGCCCGCGGCCGCTAGAAGGCTTCTTCAAACCAATTACGAAGATGATGGAATTTTGATCAATGGTAATAACCTTTCCGACGCCATTGCGGCAGCTCCGAACAAGTCTGTCATCACTAAAGGATACTTCTTGATCTATGTTACTGCCGGAATTTACAACGAAAGTGTGTTGGTTCCAAAAGAAAAAAGGTATGTGTTGATGATCGGAGATGGTAACAACGAAACCATCATCACCGGCAACAAAAACGTCGTTGATGGCTCAACCACTTTCAATAGTGCAACTGTTGCTGTGGAGGGAACAGGGTTCTTCGGAGTGAACCTAACGATCAGCAACACAGCCGGCGCCGCCAAACACCAAGCGGTAGCGCTGCGAGTGAGCGCTGACAATGTGACGTTATACAGTTGCATTTTCGAAGGCTATCAAGACACTCTCTACACACACTCCCTCCGTCAATTCTACAGAGAATGTGACATCTACGGTACCGTCGACTTCATCTTCGGCAATGCTGCCGTCGTCTTGCAAAACTGCAACATTTACGCCCGCCTCCCGTTGAGTGGCCAGTTTAATGCCCTCACGGCGCAGGGTCGGACCGACCCAAATCAGAACACTGGAACCTCTATCCACAACTGCACCATCAAGCCGACGCCGGAGCTTGCCGCGAGCCCCGCCACAAAGAGCTACTTGGGGCGGCCGTGGAAGGAATATTCTCGAACAGTTTACATGCAGTCGTTTATTGGTGCCTTTATTGATCCTGCAGGCTGGAAGGAGTGGGACGGCACTTTGAATTTAAATACTTCTTATTACGCCGAGTTTAATAACTCAGGGCCGGGCTCCGACACTTCACGGCGGGCTTCGTGGGTGGTCGGTGTCATCAACGCCACCGTTGCTAATAACTTCACTGTGTCTCAATTCTTGGCCGGAGATCAATGGCTGCCACCCACCGCCGTGCCCTACACCGGGGGTTTGATATCATAA 1671 49.79 MIQAKKRNKHIHTMASSNPISLLTFLTFLFLLSSSSFAVVPTAEICQSTTSPSFCKSFLPNSPASIHSHCRFTLRNALNHARTFLTLIDAHLNLLPFPSALHDCRGLAEANLDFISQTFSIVNFTTMALPYYQAHEMMSLISAMITNEDTCYEGLVGLGSVVGLVDKVLEAISFDRKLYSLYLSLFKMGWVSEDMKAPMLPNMNHFGVGKGQLKLKMSPKDRAYYERLVHRKKPAAARRLLQTNYEDDGILINGNNLSDAIAAAPNKSVITKGYFLIYVTAGIYNESVLVPKEKRYVLMIGDGNNETIITGNKNVVDGSTTFNSATVAVEGTGFFGVNLTISNTAGAAKHQAVALRVSADNVTLYSCIFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYARLPLSGQFNALTAQGRTDPNQNTGTSIHNCTIKPTPELAASPATKSYLGRPWKEYSRTVYMQSFIGAFIDPAGWKEWDGTLNLNTSYYAEFNNSGPGSDTSRRASWVVGVINATVANNFTVSQFLAGDQWLPPTAVPYTGGLIS 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9123500 9129145 - Lsi10G006560.1 Lsi10g00656 672213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00656 556 Pfam Pectinesterase 256 540 IPR000070 GO:0030599|GO:0042545
Lsi10g00656 556 Gene3D Invertase/pectin methylesterase inhibitor family protein 43 188 IPR035513 -
Lsi10g00656 556 CDD PMEI-like_3 45 190 - -
Lsi10g00656 556 Gene3D - 253 554 IPR012334 -
Lsi10g00656 556 SMART PMEI_2 36 185 IPR006501 GO:0004857
Lsi10g00656 556 Pfam Plant invertase/pectin methylesterase inhibitor 44 158 IPR006501 GO:0004857
Lsi10g00656 556 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 188 IPR035513 -
Lsi10g00656 556 PANTHER PECTINESTERASE 26 554 - -
Lsi10g00656 556 SUPERFAMILY Pectin lyase-like 256 553 IPR011050 -
Lsi10g00656 556 PANTHER PECTINESTERASE 26 554 - -
Lsi10g00656 556 ProSitePatterns Pectinesterase signature 2. 390 399 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02274 Lsi-Chr4:29762910 Lsi10g00656 Lsi-Chr10:9123500 0 dispersed
Lsi10g00656 Lsi-Chr10:9123500 Lsi02g02434 Lsi-Chr2:30889968 1.54E-121 dispersed
Lsi10g00656 Lsi-Chr10:9123500 Lsi04g00186 Lsi-Chr4:1991203 1.32E-143 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00656 K01051 - csv:101216984 917.146