Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00673 ATGGAAGTTTCTGCTACAAAAAGAAGGCTCCTCAAAGTCATCTTCCTCGGTGACAGTGGAGTTGGGAAGACCTCTTTGATGAATCGATATGTGTATAAGAAGTTCAATCTACAGTATAAAGCAACGATTGGTGCTGACTTTATGACAAAGGAGCTACAGATTGATGACCAACTTGTCACATTGCAAGTTTGGGACACAGCAGGGCAGGAAAGGTTTCAGAGTCTAGGGGCTGCATTTTACAGAGGTGCAGATTGCTGTGTTTTTGTCTATGATGTGAATGTGGCCAAAACATTTGAATCACTTAGCAGTTGGCATGAGGAGTTTCTCAAGCAGGCAGGGCCAGCCGATCCGAAAGCATTCCCCTTCCTATTACTCGGGAACAAGATCGATGTAGACAACGGACGTAGCCGAGCCGTCTCAGAGAAAAAAGCAAGACAATGGTGTGATTCCAGGGGAAACATGCCATACTTTGAGACCTCAGCAAAAGAGGATTATAATGTCAATGAAGCATTTCTTTGCATTGCAAAAGCTGCATTAACCAATGAAGAAGAGCAGGACCATTACTTTGAAAGCATCTCTGAGTCTGTTTCAGAAGTGGAGACAAGAGGAGGAGGAGGAGGCTGTGCTTGTTAA 633 44.23 MEVSATKRRLLKVIFLGDSGVGKTSLMNRYVYKKFNLQYKATIGADFMTKELQIDDQLVTLQVWDTAGQERFQSLGAAFYRGADCCVFVYDVNVAKTFESLSSWHEEFLKQAGPADPKAFPFLLLGNKIDVDNGRSRAVSEKKARQWCDSRGNMPYFETSAKEDYNVNEAFLCIAKAALTNEEEQDHYFESISESVSEVETRGGGGGCAC 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9351279 9354057 + Lsi10G006730.1 Lsi10g00673 672230

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00673 210 SMART rho_sub_3 13 181 IPR001806 GO:0003924|GO:0005525
Lsi10g00673 210 PANTHER - 1 210 - -
Lsi10g00673 210 SMART ran_sub_2 16 202 - -
Lsi10g00673 210 Gene3D - 4 194 IPR027417 -
Lsi10g00673 210 ProSiteProfiles small GTPase Ras family profile. 6 210 IPR001806 GO:0003924|GO:0005525
Lsi10g00673 210 PRINTS Transforming protein P21 ras signature 34 50 - -
Lsi10g00673 210 PRINTS Transforming protein P21 ras signature 52 74 - -
Lsi10g00673 210 PRINTS Transforming protein P21 ras signature 118 131 - -
Lsi10g00673 210 PRINTS Transforming protein P21 ras signature 156 178 - -
Lsi10g00673 210 PRINTS Transforming protein P21 ras signature 11 32 - -
Lsi10g00673 210 SMART ras_sub_4 8 181 - -
Lsi10g00673 210 PANTHER RAB FAMILY 1 210 - -
Lsi10g00673 210 TIGRFAM small_GTP: small GTP-binding protein domain 11 171 IPR005225 GO:0005525
Lsi10g00673 210 CDD Rab7 11 184 - -
Lsi10g00673 210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 185 IPR027417 -
Lsi10g00673 210 Pfam Ras family 12 178 IPR001806 GO:0003924|GO:0005525
Lsi10g00673 210 SMART rab_sub_5 11 181 - -
Lsi10g00673 210 ProSiteProfiles small GTPase Rho family profile. 4 181 - -
Lsi10g00673 210 ProSiteProfiles small GTPase Rab1 family profile. 4 210 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00673 K07897 RAB7A; Ras-related protein Rab-7A - csv:101212418 389.423
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi10g00673 Lsi11g01095 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01174 Lsi-Chr8:20359042 Lsi10g00673 Lsi-Chr10:9351279 9.85E-25 dispersed
Lsi10g00673 Lsi-Chr10:9351279 Lsi11g01095 Lsi-Chr11:19086951 6.80E-88 dispersed
Lsi10g00671 Lsi-Chr10:9305823 Lsi10g00673 Lsi-Chr10:9351279 2.65E-13 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g580 . . . . . Bpe12g00077 . . Cmo19g00673 . . . . . . . Cpe15g00533 Bhi05g01223 Tan02g0809 . . Hepe02g0515 . . Cla02g00529 Cam02g0547 Cec02g0548 Cco02g0554 Clacu02g0548 Cmu02g0543 Cre02g0874 Cone12ag1146 Cone8ag1194 Cone3ag1157 Cone10ag1166 Lsi10g00673 . . Cme01g01430 Blo04g00507 Blo13g00556 Bda15g00017 Bda14g00548 . . . . . . . . Cma19g00659 . Car19g00502 . Cpe01g00429 . . . . . . . . . . . . . . Lsi11g01095 . Chy01g00795 Cme11g00207
Vvi7g1168 . Blo16g00503 . . . . . . . . . Cma20g01106 . Car20g00951 . . Cpe16g00052 . . . . . . . . . . . . . . . . Cone8ag0070 . . . . . . . Bda11g01339 . . . . Bma06g00545 Sed05g3820 . Cmo20g01136 . . . . . . Bhi10g02307 Tan07g0957 . . Hepe10g0784 . . Cla02g00101 Cam02g0107 Cec02g0108 Cco02g0100 Clacu02g0104 Cmu02g0098 Cre02g0439 Lsi10g00673 Csa02g01557 . Cme11g00207
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002492 2 2 2 2 2 1 3 1 1 1 1 1 2 2 2 2 1 2 2 1 2 2 2 2 2 2 2 5 4 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi10g00673 Lsi_Chr10 FPKM 3.213321 3.730617 12.706367 12.375471 20.749214 17.035013 22.295921 50.847256 48.432098 48.704823