Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi10g00681 ATGGACCCAACTTTGGTTAAATCAAAAGACTCCCATTCTTACTGGCTTCTAACCCTTCCTTATTTTCTTGCTTTCGAAAACTATGGTCTCTTCCATTGCTTTCTCCTCCTCCTTCTCGCTTTCCTCTCTCTCGCTTTTCTCACTTGGGCTTTCTCCCCTGCCGGCACTGCCTGGAGAAATGGAAGGAACCGTCGGGGCCGCCTCCCCATTCCCGGCTCTCGCGGCCTTCCATTTCTCGGCAGTTTATTGACTCTCACCCACGCCTTACCACATCGGACTTTGGCTGCCATGGCGGCCACCCGTTCCAACTCTCATCTCATGGCCTTCTCTCTTGGCTCCACTCCTGTTGTGGTTGCTTCCCAACCCAACACCGCTAAGGAAATTCTAACCTCCCCCCACTTTGCGGACCGCCCGCTCAAGCAGTCCGCCAAGAGTCTAATGTTCGCTCGAGCCATAGGGTTCGCACCAAACGGAACTTACTGGCGTCTCTTAAGAAGAATTGCTTCTTCCCACCTCTTCTCTCCCAAGCGTATTGCTGCCCATGAAGGCGCGCGGCAGCTCCATTGTTCTGCTATGATCCACAGCATTCGCCATGAACAAAGCCTTCATGGAGCTGTTGGTTTGAGGAACCATCTTCAAGCTGCTTCGTTGAAGAACGTGATGTGGAGTGTGTTTGGGAAGCGGTTCGAGGAAGGGGATTTGGAATTGGAAATGGTTCGGGATTTGGTCCGTGAAGGGTTCGAGCTATTGGGTGCGTTTAATTGGTCTGATTATCTCCCTTGGCTCACTTGGTTCTATGACCCGTTTTGTATTAACCAACGCTGCGCTAAACTTGTCCCTAATGTTAATAAATTCGTACGAGGCGTAATTGATGAACACCGCCGTTGTAAAACCCTGTCGGATGATTCTGATTTTGTTGACGTTTTGCTTTCTCTTGATGGCGATGAAAAACTCAACGACAATGACATAGTCGCCGTTTTATGGGAAATGATTTTTAGGGGTACGGATACGACAGCGCTGCTGACAGAGTGGGTGATGGCGGAGTTAGTTTTGCACGGTGAAATACAGGAAGAAGTTGAGAGGGAAATCGAGAGGGTAGTGAGCGGTGACGGAAGGAAGCTTACAGACGCTGACGTGGCGAAACTGCCTTACTTACAGGCGGTGGTGAAGGAGACTCTGCGACTACACCCACCGGGCCCACTTCTCTCGTGGGCCCGTCTCTCTTCGTCGGACGTCCAGCTCAGCAACGGCATGCTTATCCCGGAGAACACAACCGCCATGGTCAATATGTGGGCCATCACGCACGATCCCCACGTATGGGAGAATCCACACGTGTTCAACCCGGGCAGGTTTCTGACCGCTGACGTGGACGTGAGGGGCAGCGATCTCCGCCTAGCGCCGTTTGGGGCTGGGCGGAGGGTCTGCCCCGGAAAGAACCTCGGCCTTGTGACGGTCACACTATGGGTGGCTAAGTTGGTTCATCACTTCAAATGGGCCCCCGACCCGGCCCACCCAGTCGACCTTACCGAACTCCTCAAGCTCTCGTCTGAGATGAAGAATCCTCTACGTGCAGTCGCAGGGGAAAGACGTGCTCTTTAG 1599 52.97 MDPTLVKSKDSHSYWLLTLPYFLAFENYGLFHCFLLLLLAFLSLAFLTWAFSPAGTAWRNGRNRRGRLPIPGSRGLPFLGSLLTLTHALPHRTLAAMAATRSNSHLMAFSLGSTPVVVASQPNTAKEILTSPHFADRPLKQSAKSLMFARAIGFAPNGTYWRLLRRIASSHLFSPKRIAAHEGARQLHCSAMIHSIRHEQSLHGAVGLRNHLQAASLKNVMWSVFGKRFEEGDLELEMVRDLVREGFELLGAFNWSDYLPWLTWFYDPFCINQRCAKLVPNVNKFVRGVIDEHRRCKTLSDDSDFVDVLLSLDGDEKLNDNDIVAVLWEMIFRGTDTTALLTEWVMAELVLHGEIQEEVEREIERVVSGDGRKLTDADVAKLPYLQAVVKETLRLHPPGPLLSWARLSSSDVQLSNGMLIPENTTAMVNMWAITHDPHVWENPHVFNPGRFLTADVDVRGSDLRLAPFGAGRRVCPGKNLGLVTVTLWVAKLVHHFKWAPDPAHPVDLTELLKLSSEMKNPLRAVAGERRAL 532
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 9538744 9540799 + Lsi10G006810.1 Lsi10g00681 672238
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi10g00681 532 Gene3D Cytochrome P450 57 528 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00681 532 PRINTS E-class P450 group I signature 100 119 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00681 532 PRINTS E-class P450 group I signature 475 498 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00681 532 PRINTS E-class P450 group I signature 342 368 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00681 532 PRINTS E-class P450 group I signature 322 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00681 532 PRINTS E-class P450 group I signature 215 233 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00681 532 PRINTS E-class P450 group I signature 465 475 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00681 532 PRINTS E-class P450 group I signature 386 404 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00681 532 PRINTS E-class P450 group I signature 429 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00681 532 PANTHER CYTOCHROME P450 78A7-RELATED 8 529 - -
Lsi10g00681 532 PRINTS P450 superfamily signature 333 350 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00681 532 PRINTS P450 superfamily signature 475 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00681 532 PRINTS P450 superfamily signature 387 398 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00681 532 PRINTS P450 superfamily signature 466 475 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00681 532 Pfam Cytochrome P450 71 506 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi10g00681 532 PANTHER CYTOCHROME P450 FAMILY 78 PROTEIN 8 529 - -
Lsi10g00681 532 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 468 477 IPR017972 GO:0005506|GO:0016705
Lsi10g00681 532 SUPERFAMILY Cytochrome P450 70 529 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00903 Lsi-Chr8:17391370 Lsi10g00681 Lsi-Chr10:9538744 4.43E-159 dispersed
Lsi09g01657 Lsi-Chr9:24994503 Lsi10g00681 Lsi-Chr10:9538744 9.14E-156 dispersed
Lsi10g00681 Lsi-Chr10:9538744 Lsi03g01628 Lsi-Chr3:27403667 7.59E-90 dispersed
Lsi10g00681 Lsi-Chr10:9538744 Lsi02g00131 Lsi-Chr2:1069273 5.28E-168 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi10g00681 K20619 - csv:101214099 912.138