Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi10g00681 | ATGGACCCAACTTTGGTTAAATCAAAAGACTCCCATTCTTACTGGCTTCTAACCCTTCCTTATTTTCTTGCTTTCGAAAACTATGGTCTCTTCCATTGCTTTCTCCTCCTCCTTCTCGCTTTCCTCTCTCTCGCTTTTCTCACTTGGGCTTTCTCCCCTGCCGGCACTGCCTGGAGAAATGGAAGGAACCGTCGGGGCCGCCTCCCCATTCCCGGCTCTCGCGGCCTTCCATTTCTCGGCAGTTTATTGACTCTCACCCACGCCTTACCACATCGGACTTTGGCTGCCATGGCGGCCACCCGTTCCAACTCTCATCTCATGGCCTTCTCTCTTGGCTCCACTCCTGTTGTGGTTGCTTCCCAACCCAACACCGCTAAGGAAATTCTAACCTCCCCCCACTTTGCGGACCGCCCGCTCAAGCAGTCCGCCAAGAGTCTAATGTTCGCTCGAGCCATAGGGTTCGCACCAAACGGAACTTACTGGCGTCTCTTAAGAAGAATTGCTTCTTCCCACCTCTTCTCTCCCAAGCGTATTGCTGCCCATGAAGGCGCGCGGCAGCTCCATTGTTCTGCTATGATCCACAGCATTCGCCATGAACAAAGCCTTCATGGAGCTGTTGGTTTGAGGAACCATCTTCAAGCTGCTTCGTTGAAGAACGTGATGTGGAGTGTGTTTGGGAAGCGGTTCGAGGAAGGGGATTTGGAATTGGAAATGGTTCGGGATTTGGTCCGTGAAGGGTTCGAGCTATTGGGTGCGTTTAATTGGTCTGATTATCTCCCTTGGCTCACTTGGTTCTATGACCCGTTTTGTATTAACCAACGCTGCGCTAAACTTGTCCCTAATGTTAATAAATTCGTACGAGGCGTAATTGATGAACACCGCCGTTGTAAAACCCTGTCGGATGATTCTGATTTTGTTGACGTTTTGCTTTCTCTTGATGGCGATGAAAAACTCAACGACAATGACATAGTCGCCGTTTTATGGGAAATGATTTTTAGGGGTACGGATACGACAGCGCTGCTGACAGAGTGGGTGATGGCGGAGTTAGTTTTGCACGGTGAAATACAGGAAGAAGTTGAGAGGGAAATCGAGAGGGTAGTGAGCGGTGACGGAAGGAAGCTTACAGACGCTGACGTGGCGAAACTGCCTTACTTACAGGCGGTGGTGAAGGAGACTCTGCGACTACACCCACCGGGCCCACTTCTCTCGTGGGCCCGTCTCTCTTCGTCGGACGTCCAGCTCAGCAACGGCATGCTTATCCCGGAGAACACAACCGCCATGGTCAATATGTGGGCCATCACGCACGATCCCCACGTATGGGAGAATCCACACGTGTTCAACCCGGGCAGGTTTCTGACCGCTGACGTGGACGTGAGGGGCAGCGATCTCCGCCTAGCGCCGTTTGGGGCTGGGCGGAGGGTCTGCCCCGGAAAGAACCTCGGCCTTGTGACGGTCACACTATGGGTGGCTAAGTTGGTTCATCACTTCAAATGGGCCCCCGACCCGGCCCACCCAGTCGACCTTACCGAACTCCTCAAGCTCTCGTCTGAGATGAAGAATCCTCTACGTGCAGTCGCAGGGGAAAGACGTGCTCTTTAG | 1599 | 52.97 | MDPTLVKSKDSHSYWLLTLPYFLAFENYGLFHCFLLLLLAFLSLAFLTWAFSPAGTAWRNGRNRRGRLPIPGSRGLPFLGSLLTLTHALPHRTLAAMAATRSNSHLMAFSLGSTPVVVASQPNTAKEILTSPHFADRPLKQSAKSLMFARAIGFAPNGTYWRLLRRIASSHLFSPKRIAAHEGARQLHCSAMIHSIRHEQSLHGAVGLRNHLQAASLKNVMWSVFGKRFEEGDLELEMVRDLVREGFELLGAFNWSDYLPWLTWFYDPFCINQRCAKLVPNVNKFVRGVIDEHRRCKTLSDDSDFVDVLLSLDGDEKLNDNDIVAVLWEMIFRGTDTTALLTEWVMAELVLHGEIQEEVEREIERVVSGDGRKLTDADVAKLPYLQAVVKETLRLHPPGPLLSWARLSSSDVQLSNGMLIPENTTAMVNMWAITHDPHVWENPHVFNPGRFLTADVDVRGSDLRLAPFGAGRRVCPGKNLGLVTVTLWVAKLVHHFKWAPDPAHPVDLTELLKLSSEMKNPLRAVAGERRAL | 532 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 9538744 | 9540799 | + | Lsi10G006810.1 | Lsi10g00681 | 672238 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi10g00681 | 532 | Gene3D | Cytochrome P450 | 57 | 528 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi10g00681 | 532 | PRINTS | E-class P450 group I signature | 100 | 119 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi10g00681 | 532 | PRINTS | E-class P450 group I signature | 475 | 498 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi10g00681 | 532 | PRINTS | E-class P450 group I signature | 342 | 368 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi10g00681 | 532 | PRINTS | E-class P450 group I signature | 322 | 339 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi10g00681 | 532 | PRINTS | E-class P450 group I signature | 215 | 233 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi10g00681 | 532 | PRINTS | E-class P450 group I signature | 465 | 475 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi10g00681 | 532 | PRINTS | E-class P450 group I signature | 386 | 404 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi10g00681 | 532 | PRINTS | E-class P450 group I signature | 429 | 453 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi10g00681 | 532 | PANTHER | CYTOCHROME P450 78A7-RELATED | 8 | 529 | - | - | |
| Lsi10g00681 | 532 | PRINTS | P450 superfamily signature | 333 | 350 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi10g00681 | 532 | PRINTS | P450 superfamily signature | 475 | 486 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi10g00681 | 532 | PRINTS | P450 superfamily signature | 387 | 398 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi10g00681 | 532 | PRINTS | P450 superfamily signature | 466 | 475 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi10g00681 | 532 | Pfam | Cytochrome P450 | 71 | 506 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
| Lsi10g00681 | 532 | PANTHER | CYTOCHROME P450 FAMILY 78 PROTEIN | 8 | 529 | - | - | |
| Lsi10g00681 | 532 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 468 | 477 | IPR017972 | GO:0005506|GO:0016705 | |
| Lsi10g00681 | 532 | SUPERFAMILY | Cytochrome P450 | 70 | 529 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi08g00903 | Lsi-Chr8:17391370 | Lsi10g00681 | Lsi-Chr10:9538744 | 4.43E-159 | dispersed | |
| Lsi09g01657 | Lsi-Chr9:24994503 | Lsi10g00681 | Lsi-Chr10:9538744 | 9.14E-156 | dispersed | |
| Lsi10g00681 | Lsi-Chr10:9538744 | Lsi03g01628 | Lsi-Chr3:27403667 | 7.59E-90 | dispersed | |
| Lsi10g00681 | Lsi-Chr10:9538744 | Lsi02g00131 | Lsi-Chr2:1069273 | 5.28E-168 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi10g00681 | K20619 | - | csv:101214099 | 912.138 |